Wall clock time and date at job start Sat Apr 11 2020 05:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46651 * 2 1 4 4 C 1.52995 * 109.47279 * 119.99764 * 2 1 3 5 5 O 1.42900 * 109.46958 * 55.00226 * 4 2 1 6 6 C 1.35960 * 116.99714 * 180.02562 * 5 4 2 7 7 C 1.38662 * 120.06627 * 359.97438 * 6 5 4 8 8 C 1.38173 * 119.97147 * 180.02562 * 7 6 5 9 9 C 1.38265 * 120.09700 * 359.97438 * 8 7 6 10 10 C 1.38261 * 120.12200 * 0.02562 * 9 8 7 11 11 C 1.38329 * 120.03073 * 0.02562 * 10 9 8 12 12 F 1.35105 * 120.04508 * 180.02562 * 11 10 9 13 13 N 1.46500 * 109.46979 * 239.99941 * 2 1 3 14 14 C 1.34777 * 119.99654 * 84.99779 * 13 2 1 15 15 O 1.21583 * 120.00484 * 0.02562 * 14 13 2 16 16 N 1.34779 * 119.99696 * 179.97438 * 14 13 2 17 17 C 1.46498 * 120.00073 * 180.02562 * 16 14 13 18 18 C 1.50701 * 109.47118 * 180.02562 * 17 16 14 19 19 O 1.21289 * 120.00461 * 359.97438 * 18 17 16 20 20 N 1.34777 * 120.00078 * 179.97438 * 18 17 16 21 21 C 1.37093 * 120.00239 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99979 * 0.02562 * 21 20 18 23 23 C 1.38950 * 119.99972 * 179.97438 * 21 20 18 24 24 N 1.31408 * 120.00241 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99731 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47274 * 90.00246 * 25 23 21 27 27 H 1.48502 * 109.46967 * 209.99783 * 25 23 21 28 28 H 1.48498 * 109.47128 * 330.00077 * 25 23 21 29 29 H 1.09006 * 109.46982 * 300.00305 * 1 2 3 30 30 H 1.08997 * 109.47619 * 59.99804 * 1 2 3 31 31 H 1.08999 * 109.47094 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47391 * 294.99947 * 4 2 1 33 33 H 1.08999 * 109.47387 * 174.99852 * 4 2 1 34 34 H 1.08000 * 120.01032 * 0.02562 * 7 6 5 35 35 H 1.07999 * 119.95246 * 180.02562 * 8 7 6 36 36 H 1.07999 * 119.93952 * 179.74964 * 9 8 7 37 37 H 1.08006 * 119.97796 * 180.02562 * 10 9 8 38 38 H 0.97000 * 120.00101 * 264.99906 * 13 2 1 39 39 H 0.97000 * 120.00059 * 0.02562 * 16 14 13 40 40 H 1.09004 * 109.46891 * 300.00002 * 17 16 14 41 41 H 1.08998 * 109.47507 * 59.99555 * 17 16 14 42 42 H 0.97005 * 119.99894 * 0.02562 * 20 18 17 43 43 H 0.97003 * 119.99796 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 8 1.4703 -2.0303 1.3094 6 6 1.8229 -2.8088 2.3668 7 6 2.6990 -2.3231 3.3255 8 6 3.0564 -3.1162 4.3991 9 6 2.5413 -4.3936 4.5192 10 6 1.6675 -4.8819 3.5655 11 6 1.3070 -4.0928 2.4881 12 9 0.4526 -4.5695 1.5563 13 7 2.0183 -0.6906 -1.1962 14 6 2.1470 -0.0182 -2.3571 15 8 1.8582 1.1616 -2.4116 16 7 2.5967 -0.6535 -3.4575 17 6 2.7371 0.0775 -4.7193 18 6 3.2534 -0.8546 -5.7850 19 8 3.4822 -2.0152 -5.5168 20 7 3.4611 -0.3986 -7.0362 21 6 3.9313 -1.2464 -8.0055 22 1 4.1350 -2.2798 -7.7666 23 6 4.1449 -0.7764 -9.2955 24 7 3.8956 0.4806 -9.5866 25 14 4.7850 -1.9318 -10.6165 26 1 3.6396 -2.5765 -11.3077 27 1 5.5874 -1.1621 -11.6009 28 1 5.6367 -2.9752 -9.9912 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.7517 -0.1582 2.1369 33 1 3.1264 -0.7994 1.2056 34 1 3.1018 -1.3253 3.2332 35 1 3.7385 -2.7374 5.1458 36 1 2.8256 -5.0128 5.3572 37 1 1.2662 -5.8800 3.6619 38 1 2.2490 -1.6318 -1.1526 39 1 2.8274 -1.5946 -3.4139 40 1 1.7665 0.4714 -5.0208 41 1 3.4380 0.9014 -4.5859 42 1 3.2785 0.5296 -7.2506 43 1 4.0451 0.8088 -10.4871 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323250524.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:31 Heat of formation + Delta-G solvation = -124.709069 kcal Electronic energy + Delta-G solvation = -28066.850031 eV Core-core repulsion = 23641.072149 eV Total energy + Delta-G solvation = -4425.777882 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.05596 -40.61386 -39.82037 -38.34198 -37.91803 -35.55343 -34.36335 -33.63573 -31.48779 -31.22466 -31.12937 -30.02018 -27.35309 -27.24119 -24.50411 -23.45947 -22.91506 -21.50407 -20.53378 -19.57218 -18.95519 -18.40276 -17.96477 -17.51067 -17.05068 -16.64096 -16.11722 -15.60673 -15.57142 -15.36005 -15.30768 -14.83431 -14.68918 -14.57305 -14.24532 -14.06829 -13.84919 -13.58521 -13.32440 -13.24857 -12.83108 -12.57917 -12.26040 -12.16056 -11.98216 -11.87110 -11.61638 -11.57116 -11.35361 -11.28150 -11.11063 -10.44688 -10.30614 -10.03723 -9.61926 -9.40451 -9.19910 -8.63110 -8.61067 -8.60526 -8.08180 -6.49741 -3.91629 0.67279 0.81113 2.56311 2.80262 3.13030 3.13266 3.23273 3.28841 3.39761 3.77148 3.83025 4.09989 4.16635 4.33219 4.39085 4.49341 4.60762 4.68773 4.77612 4.83544 4.92085 4.97684 5.18642 5.19023 5.25751 5.50001 5.53710 5.60319 5.72392 5.79702 5.92267 5.93728 6.02319 6.10186 6.15830 6.19721 6.50159 6.76860 6.85526 7.10665 7.47695 7.94272 8.24325 8.47216 8.79442 9.06522 9.41434 9.89511 10.67161 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017490 B = 0.001885 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.491883 B =14847.630069 C =15810.125408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.169 3.831 3 H 0.109 0.891 4 C 0.049 3.951 5 O -0.301 6.301 6 C 0.101 3.899 7 C -0.184 4.184 8 C -0.090 4.090 9 C -0.131 4.131 10 C -0.117 4.117 11 C 0.069 3.931 12 F -0.131 7.131 13 N -0.744 5.744 14 C 0.706 3.294 15 O -0.599 6.599 16 N -0.724 5.724 17 C 0.129 3.871 18 C 0.429 3.571 19 O -0.597 6.597 20 N -0.550 5.550 21 C -0.304 4.304 22 H 0.105 0.895 23 C 0.025 3.975 24 N -0.895 5.895 25 Si 0.933 3.067 26 H -0.277 1.277 27 H -0.283 1.283 28 H -0.269 1.269 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.138 0.862 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.142 0.858 38 H 0.401 0.599 39 H 0.407 0.593 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.396 0.604 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.526 -3.819 29.130 29.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.064 3.936 3 H 0.127 0.873 4 C -0.027 4.027 5 O -0.214 6.214 6 C 0.054 3.946 7 C -0.202 4.202 8 C -0.108 4.108 9 C -0.150 4.150 10 C -0.136 4.136 11 C 0.049 3.951 12 F -0.109 7.109 13 N -0.401 5.401 14 C 0.406 3.594 15 O -0.478 6.478 16 N -0.381 5.381 17 C 0.000 4.000 18 C 0.214 3.786 19 O -0.484 6.484 20 N -0.185 5.185 21 C -0.434 4.434 22 H 0.123 0.877 23 C -0.178 4.178 24 N -0.535 5.535 25 Si 0.760 3.240 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.193 1.193 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.156 0.844 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.159 0.841 38 H 0.235 0.765 39 H 0.245 0.755 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.230 0.770 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.766 -3.434 28.810 29.258 hybrid contribution 0.409 -0.750 -0.884 1.229 sum -3.357 -4.184 27.927 28.437 Atomic orbital electron populations 1.22158 0.94553 1.03014 1.02576 1.20833 0.95161 0.96374 0.81253 0.87343 1.23314 0.98539 0.81570 0.99265 1.86171 1.66969 1.26405 1.41883 1.19025 0.96093 0.90365 0.89084 1.21211 1.01111 1.01931 0.95981 1.21040 0.98803 0.93835 0.97145 1.20952 0.98229 0.96274 0.99510 1.21070 0.99133 1.00283 0.93114 1.17043 0.96093 0.91256 0.90705 1.91534 1.67679 1.88006 1.63693 1.45090 1.72310 1.13980 1.08700 1.15837 0.78362 0.84947 0.80249 1.90896 1.57801 1.14344 1.84747 1.44781 1.70069 1.14939 1.08296 1.20782 1.02095 0.94270 0.82811 1.19776 0.85819 0.88882 0.84104 1.90495 1.58247 1.18483 1.81161 1.41786 1.56254 1.13041 1.07370 1.19725 1.40291 0.94932 0.88433 0.87703 1.25325 0.97340 0.96607 0.98503 1.69616 1.47900 1.14109 1.21873 0.85811 0.78835 0.79563 0.79800 1.20279 1.20818 1.19343 0.91899 0.91439 0.91563 0.90103 0.90801 0.84409 0.85031 0.84856 0.84061 0.76520 0.75548 0.90014 0.90013 0.77019 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 9.29 37.16 0.35 -1.34 16 2 C 0.17 1.69 2.98 -67.93 -0.20 1.49 16 3 H 0.11 1.12 7.58 -51.93 -0.39 0.73 16 4 C 0.05 0.36 4.48 37.15 0.17 0.53 16 5 O -0.30 -2.91 8.85 -19.61 -0.17 -3.09 16 6 C 0.10 0.92 6.69 -39.18 -0.26 0.66 16 7 C -0.18 -1.24 9.04 -39.45 -0.36 -1.60 16 8 C -0.09 -0.51 10.04 -39.60 -0.40 -0.90 16 9 C -0.13 -0.75 10.04 -39.56 -0.40 -1.14 16 10 C -0.12 -0.85 10.02 -39.54 -0.40 -1.24 16 11 C 0.07 0.67 7.31 -39.30 -0.29 0.39 16 12 F -0.13 -1.55 17.11 2.25 0.04 -1.51 16 13 N -0.74 -9.15 5.06 -58.68 -0.30 -9.44 16 14 C 0.71 11.46 8.53 -86.92 -0.74 10.72 16 15 O -0.60 -11.42 16.01 5.29 0.08 -11.33 16 16 N -0.72 -12.42 5.53 -66.41 -0.37 -12.78 16 17 C 0.13 2.43 6.15 -5.19 -0.03 2.40 16 18 C 0.43 9.96 7.85 -10.98 -0.09 9.88 16 19 O -0.60 -15.49 15.24 5.55 0.08 -15.41 16 20 N -0.55 -13.76 5.29 -10.96 -0.06 -13.82 16 21 C -0.30 -8.34 9.68 -14.94 -0.14 -8.49 16 22 H 0.11 2.99 7.16 -52.48 -0.38 2.62 16 23 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 24 N -0.89 -24.04 13.05 55.50 0.72 -23.31 16 25 Si 0.93 20.70 29.55 -169.99 -5.02 15.68 16 26 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 27 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 28 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.73 7.56 -51.93 -0.39 0.33 16 32 H 0.08 0.42 7.66 -51.93 -0.40 0.02 16 33 H 0.07 0.48 7.66 -51.93 -0.40 0.08 16 34 H 0.14 0.66 6.30 -52.49 -0.33 0.33 16 35 H 0.13 0.42 8.06 -52.49 -0.42 0.00 16 36 H 0.13 0.43 8.06 -52.49 -0.42 0.01 16 37 H 0.14 0.76 8.06 -52.48 -0.42 0.33 16 38 H 0.40 4.49 8.40 -40.82 -0.34 4.14 16 39 H 0.41 6.90 7.45 -40.82 -0.30 6.60 16 40 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 42 H 0.40 9.53 7.90 -40.82 -0.32 9.21 16 43 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 377.34 15.07 5.69 5.69 Total: -1.00 -33.21 377.34 -7.54 -40.75 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: -5.35 Total: 16.67 kcal Atomic # 6 Polarization: 14.80 SS G_CDS: -2.89 Total: 11.91 kcal Atomic # 7 Polarization: -59.36 SS G_CDS: 0.00 Total: -59.36 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: 0.00 Total: -29.83 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.21 -7.54 -40.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323250524.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.962 kcal (2) G-P(sol) polarization free energy of solvation -33.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds