Wall clock time and date at job start Sat Apr 11 2020 05:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 5 5 O 1.42907 * 109.47171 * 305.00201 * 4 2 1 6 6 C 1.35956 * 117.00111 * 179.97438 * 5 4 2 7 7 C 1.38660 * 120.05996 * 0.02562 * 6 5 4 8 8 C 1.38186 * 119.96812 * 179.97438 * 7 6 5 9 9 C 1.38259 * 120.09500 * 0.02562 * 8 7 6 10 10 C 1.38257 * 120.12488 * 0.02562 * 9 8 7 11 11 C 1.38340 * 120.03090 * 359.69895 * 10 9 8 12 12 F 1.35099 * 120.04574 * 180.28008 * 11 10 9 13 13 N 1.46500 * 109.47023 * 120.00071 * 2 1 3 14 14 C 1.34779 * 119.99793 * 274.99565 * 13 2 1 15 15 O 1.21578 * 120.00118 * 0.02562 * 14 13 2 16 16 N 1.34778 * 119.99594 * 179.97438 * 14 13 2 17 17 C 1.46498 * 119.99664 * 179.97438 * 16 14 13 18 18 C 1.50704 * 109.47177 * 180.02562 * 17 16 14 19 19 O 1.21287 * 119.99935 * 0.02562 * 18 17 16 20 20 N 1.34771 * 119.99980 * 179.97438 * 18 17 16 21 21 C 1.37098 * 119.99922 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00145 * 0.02562 * 21 20 18 23 23 C 1.38949 * 120.00153 * 180.02562 * 21 20 18 24 24 N 1.31417 * 120.00177 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 120.00022 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.46731 * 90.00426 * 25 23 21 27 27 H 1.48501 * 109.47285 * 210.00440 * 25 23 21 28 28 H 1.48493 * 109.47198 * 330.00486 * 25 23 21 29 29 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 30 30 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 31 31 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47196 * 65.00121 * 4 2 1 33 33 H 1.09001 * 109.47630 * 185.00216 * 4 2 1 34 34 H 1.08003 * 120.02164 * 359.97438 * 7 6 5 35 35 H 1.07996 * 119.95508 * 180.02562 * 8 7 6 36 36 H 1.08002 * 119.94206 * 179.97438 * 9 8 7 37 37 H 1.07999 * 119.98844 * 180.02562 * 10 9 8 38 38 H 0.97004 * 120.00223 * 94.99655 * 13 2 1 39 39 H 0.96995 * 120.00471 * 0.02562 * 16 14 13 40 40 H 1.09004 * 109.47300 * 300.00396 * 17 16 14 41 41 H 1.09000 * 109.47257 * 60.00791 * 17 16 14 42 42 H 0.97000 * 120.00145 * 0.02562 * 20 18 17 43 43 H 0.97001 * 119.99744 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.4701 -2.0304 -1.3094 6 6 1.8226 -2.8091 -2.3667 7 6 2.6988 -2.3233 -3.3254 8 6 3.0562 -3.1166 -4.3990 9 6 2.5410 -4.3939 -4.5191 10 6 1.6663 -4.8818 -3.5660 11 6 1.3094 -4.0942 -2.4861 12 9 0.4591 -4.5727 -1.5516 13 7 2.0183 -0.6906 1.1962 14 6 2.1471 -0.0182 2.3571 15 8 1.8576 1.1613 2.4118 16 7 2.5958 -0.6538 3.4577 17 6 2.7364 0.0772 4.7195 18 6 3.2527 -0.8548 5.7852 19 8 3.4813 -2.0154 5.5170 20 7 3.4614 -0.3985 7.0360 21 6 3.9307 -1.2466 8.0057 22 1 4.1335 -2.2802 7.7671 23 6 4.1454 -0.7763 9.2954 24 7 4.5956 -1.5891 10.2248 25 14 3.7953 1.0117 9.7080 26 1 2.3871 1.1490 10.1590 27 1 4.7079 1.4575 10.7914 28 1 4.0126 1.8498 8.5016 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7516 -0.1584 -2.1370 33 1 3.1263 -0.7996 -1.2056 34 1 3.1017 -1.3255 -3.2332 35 1 3.7389 -2.7382 -5.1453 36 1 2.8217 -5.0116 -5.3594 37 1 1.2655 -5.8801 -3.6617 38 1 2.2490 -1.6318 1.1526 39 1 2.8265 -1.5949 3.4142 40 1 3.4381 0.9006 4.5862 41 1 1.7660 0.4720 5.0207 42 1 3.2790 0.5297 7.2504 43 1 4.7459 -1.2606 11.1250 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323250525.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:32 Heat of formation + Delta-G solvation = -117.517272 kcal Electronic energy + Delta-G solvation = -28120.036715 eV Core-core repulsion = 23694.570693 eV Total energy + Delta-G solvation = -4425.466022 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.06845 -40.64282 -39.89739 -38.49997 -37.97939 -35.61401 -34.44368 -33.72410 -31.81612 -31.37978 -31.14991 -30.04866 -27.55192 -27.28670 -24.38009 -23.46239 -22.92883 -21.52088 -20.59006 -19.64249 -19.05289 -18.73976 -18.11975 -17.53155 -17.06671 -16.66771 -16.17287 -15.63329 -15.62937 -15.41326 -15.36992 -14.95444 -14.84396 -14.59343 -14.33818 -14.16310 -13.88874 -13.49606 -13.27036 -13.12007 -12.86900 -12.62664 -12.47311 -12.28426 -12.15302 -12.08477 -11.93949 -11.59077 -11.39209 -11.31709 -11.22400 -10.63346 -10.13100 -10.04763 -9.68665 -9.41571 -9.26750 -8.75440 -8.71024 -8.64257 -8.29212 -6.39621 -3.92173 0.66073 0.79858 2.53311 2.73205 3.00598 3.05327 3.12034 3.13361 3.31479 3.59020 3.81649 4.04511 4.13957 4.24943 4.32695 4.46119 4.56042 4.61976 4.67365 4.76534 4.81155 4.95508 5.14955 5.15323 5.21980 5.48521 5.49863 5.58685 5.66888 5.71214 5.76861 5.81554 5.86479 5.91165 6.11979 6.17820 6.44410 6.64432 6.83489 7.02926 7.46229 8.01547 8.16556 8.45649 8.71596 8.83011 9.31087 9.64980 10.72555 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019425 B = 0.001918 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.066400 B =14594.815375 C =15398.533664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.169 3.831 3 H 0.109 0.891 4 C 0.049 3.951 5 O -0.301 6.301 6 C 0.101 3.899 7 C -0.184 4.184 8 C -0.090 4.090 9 C -0.131 4.131 10 C -0.117 4.117 11 C 0.069 3.931 12 F -0.130 7.130 13 N -0.743 5.743 14 C 0.707 3.293 15 O -0.599 6.599 16 N -0.724 5.724 17 C 0.126 3.874 18 C 0.438 3.562 19 O -0.579 6.579 20 N -0.577 5.577 21 C -0.309 4.309 22 H 0.121 0.879 23 C 0.044 3.956 24 N -0.875 5.875 25 Si 0.880 3.120 26 H -0.269 1.269 27 H -0.275 1.275 28 H -0.267 1.267 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.138 0.862 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.142 0.858 38 H 0.401 0.599 39 H 0.408 0.592 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.374 0.626 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.263 0.909 -31.008 31.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.064 3.936 3 H 0.126 0.874 4 C -0.027 4.027 5 O -0.214 6.214 6 C 0.054 3.946 7 C -0.202 4.202 8 C -0.108 4.108 9 C -0.149 4.149 10 C -0.136 4.136 11 C 0.049 3.951 12 F -0.109 7.109 13 N -0.400 5.400 14 C 0.407 3.593 15 O -0.478 6.478 16 N -0.382 5.382 17 C -0.002 4.002 18 C 0.224 3.776 19 O -0.463 6.463 20 N -0.214 5.214 21 C -0.438 4.438 22 H 0.139 0.861 23 C -0.160 4.160 24 N -0.514 5.514 25 Si 0.705 3.295 26 H -0.194 1.194 27 H -0.200 1.200 28 H -0.192 1.192 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.156 0.844 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.160 0.840 38 H 0.236 0.764 39 H 0.246 0.754 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.208 0.792 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.454 1.129 -30.649 31.151 hybrid contribution 0.032 0.529 0.577 0.783 sum -5.422 1.658 -30.071 30.601 Atomic orbital electron populations 1.22156 0.94521 1.03058 1.02572 1.20841 0.95178 0.96357 0.81239 0.87351 1.23311 0.98547 0.81616 0.99228 1.86168 1.66970 1.26380 1.41927 1.19017 0.96153 0.90345 0.89086 1.21211 1.01094 1.01930 0.95996 1.21042 0.98819 0.93820 0.97150 1.20954 0.98169 0.96277 0.99526 1.21075 0.99108 1.00320 0.93085 1.17043 0.96216 0.91208 0.90598 1.91533 1.67936 1.87936 1.63491 1.45091 1.72196 1.14026 1.08683 1.15819 0.78310 0.84923 0.80243 1.90893 1.57800 1.14372 1.84770 1.44758 1.70244 1.14980 1.08181 1.20803 1.02143 0.94278 0.82999 1.19667 0.85341 0.88960 0.83603 1.90539 1.56755 1.18263 1.80729 1.42112 1.58759 1.11598 1.08978 1.19439 1.40571 0.95835 0.87957 0.86100 1.25071 0.96998 0.98450 0.95450 1.69623 1.43451 1.35307 1.02996 0.86664 0.79362 0.84255 0.79173 1.19393 1.20007 1.19213 0.91468 0.91869 0.91520 0.90089 0.90790 0.84422 0.85027 0.84841 0.84043 0.76438 0.75401 0.89894 0.89866 0.79238 0.91406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.29 37.16 0.35 -1.27 16 2 C 0.17 1.61 2.98 -67.93 -0.20 1.41 16 3 H 0.11 1.06 7.58 -51.93 -0.39 0.67 16 4 C 0.05 0.34 4.48 37.16 0.17 0.51 16 5 O -0.30 -2.83 8.85 -19.60 -0.17 -3.01 16 6 C 0.10 0.90 6.69 -39.18 -0.26 0.64 16 7 C -0.18 -1.21 9.04 -39.44 -0.36 -1.56 16 8 C -0.09 -0.49 10.04 -39.59 -0.40 -0.89 16 9 C -0.13 -0.73 10.04 -39.57 -0.40 -1.13 16 10 C -0.12 -0.83 10.02 -39.54 -0.40 -1.23 16 11 C 0.07 0.67 7.31 -39.30 -0.29 0.38 16 12 F -0.13 -1.53 17.11 2.25 0.04 -1.49 16 13 N -0.74 -8.73 5.06 -58.68 -0.30 -9.03 16 14 C 0.71 10.94 8.53 -86.91 -0.74 10.20 16 15 O -0.60 -10.89 16.01 5.30 0.08 -10.81 16 16 N -0.72 -11.81 5.53 -66.41 -0.37 -12.18 16 17 C 0.13 2.23 6.15 -5.19 -0.03 2.19 16 18 C 0.44 9.73 7.85 -10.99 -0.09 9.65 16 19 O -0.58 -14.77 15.24 5.55 0.08 -14.69 16 20 N -0.58 -13.51 5.09 -10.96 -0.06 -13.57 16 21 C -0.31 -8.59 10.16 -14.93 -0.15 -8.74 16 22 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 23 C 0.04 1.20 5.50 -17.47 -0.10 1.10 16 24 N -0.87 -25.11 13.96 55.50 0.77 -24.33 16 25 Si 0.88 19.11 27.74 -169.99 -4.71 14.40 16 26 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 27 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 28 H -0.27 -5.31 6.52 56.52 0.37 -4.94 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.71 7.56 -51.93 -0.39 0.31 16 32 H 0.08 0.40 7.66 -51.93 -0.40 0.00 16 33 H 0.07 0.46 7.66 -51.93 -0.40 0.06 16 34 H 0.14 0.63 6.30 -52.48 -0.33 0.30 16 35 H 0.13 0.41 8.06 -52.49 -0.42 -0.02 16 36 H 0.13 0.42 8.06 -52.49 -0.42 0.00 16 37 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 38 H 0.40 4.30 8.40 -40.82 -0.34 3.96 16 39 H 0.41 6.63 7.45 -40.82 -0.30 6.32 16 40 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 42 H 0.37 7.74 5.76 -40.82 -0.24 7.50 16 43 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 374.22 15.07 5.64 5.64 Total: -1.00 -34.31 374.22 -7.19 -41.50 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: -5.31 Total: 16.30 kcal Atomic # 6 Polarization: 14.16 SS G_CDS: -2.90 Total: 11.26 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: 0.05 Total: -59.10 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: 0.00 Total: -28.50 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -4.71 Total: 14.40 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.31 -7.19 -41.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323250525.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.020 kcal (2) G-P(sol) polarization free energy of solvation -34.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds