Wall clock time and date at job start Sat Apr 11 2020 05:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42897 * 113.99953 * 2 1 4 4 C 1.50698 * 109.47203 * 180.02562 * 3 2 1 5 5 N 1.30945 * 122.90423 * 270.00068 * 4 3 2 6 6 C 1.29431 * 117.36306 * 179.97438 * 5 4 3 7 7 S 1.70945 * 110.39245 * 359.72633 * 6 5 4 8 8 C 1.35656 * 122.90688 * 90.00206 * 4 3 2 9 9 C 1.46691 * 126.12877 * 0.02562 * 8 4 3 10 10 O 1.21688 * 119.99886 * 0.02562 * 9 8 4 11 11 N 1.34774 * 119.99832 * 180.02562 * 9 8 4 12 12 C 1.47025 * 125.65256 * 359.96688 * 11 9 8 13 13 C 1.54320 * 107.27206 * 181.10599 * 12 11 9 14 14 C 1.55160 * 102.94240 * 22.19908 * 13 12 11 15 15 H 1.09002 * 111.00188 * 82.60711 * 14 13 12 16 16 C 1.52995 * 111.00207 * 206.42112 * 14 13 12 17 17 H 1.08997 * 109.47126 * 59.24972 * 16 14 13 18 18 C 1.53001 * 109.46951 * 179.25029 * 16 14 13 19 19 N 1.46502 * 109.47094 * 299.24630 * 16 14 13 20 20 C 1.36934 * 119.99838 * 155.00085 * 19 16 14 21 21 H 1.07997 * 120.00252 * 0.02562 * 20 19 16 22 22 C 1.38814 * 120.00061 * 180.02562 * 20 19 16 23 23 N 1.31618 * 120.00058 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00092 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47093 * 60.00216 * 24 22 20 26 26 H 1.48500 * 109.47056 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47161 * 300.00228 * 24 22 20 28 28 C 1.47422 * 125.64893 * 180.02562 * 11 9 8 29 29 H 1.09002 * 109.47349 * 60.00032 * 1 2 3 30 30 H 1.08998 * 109.47127 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47461 * 299.99995 * 1 2 3 32 32 H 1.09006 * 109.47439 * 60.00226 * 3 2 1 33 33 H 1.08998 * 109.47293 * 300.00278 * 3 2 1 34 34 H 1.08001 * 124.80211 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.87699 * 61.69168 * 12 11 9 36 36 H 1.08999 * 110.01480 * 300.60635 * 12 11 9 37 37 H 1.08999 * 110.72084 * 263.83320 * 13 12 11 38 38 H 1.09008 * 110.71725 * 140.56150 * 13 12 11 39 39 H 1.09005 * 109.47191 * 54.73120 * 18 16 14 40 40 H 1.09001 * 109.47113 * 294.73227 * 18 16 14 41 41 H 1.09001 * 109.46902 * 174.72943 * 18 16 14 42 42 H 0.96999 * 120.00289 * 335.00400 * 19 16 14 43 43 H 0.97002 * 120.00115 * 180.02562 * 23 22 20 44 44 H 1.08999 * 110.36915 * 36.97749 * 28 11 9 45 45 H 1.09002 * 110.36526 * 274.66463 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5124 1.1865 -0.0006 5 7 4.2220 1.1301 1.0985 6 6 5.5061 1.0279 0.9729 7 16 5.9416 0.9855 -0.6796 8 6 4.2466 1.1285 -1.1399 9 6 3.7229 1.1708 -2.5094 10 8 2.5249 1.2667 -2.7000 11 7 4.5686 1.1034 -3.5566 12 6 6.0318 0.9871 -3.4705 13 6 6.5761 0.9722 -4.9144 14 6 5.4377 1.6502 -5.7219 15 1 5.5102 2.7362 -5.6629 16 6 5.4441 1.1813 -7.1782 17 1 5.3151 0.0995 -7.2122 18 6 4.2988 1.8557 -7.9361 19 7 6.7204 1.5407 -7.8013 20 6 7.1840 0.8263 -8.8736 21 1 6.6086 -0.0019 -9.2602 22 6 8.3935 1.1664 -9.4637 23 7 9.0950 2.1754 -8.9923 24 14 9.0256 0.1922 -10.9269 25 1 8.0463 0.2794 -12.0399 26 1 10.3279 0.7523 -11.3691 27 1 9.2046 -1.2289 -10.5353 28 6 4.1800 1.1354 -4.9783 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8464 -0.8899 34 1 6.2035 0.9729 1.7958 35 1 6.3006 0.0604 -2.9634 36 1 6.4424 1.8387 -2.9281 37 1 6.7350 -0.0506 -5.2561 38 1 7.4969 1.5512 -4.9854 39 1 4.3756 2.9371 -7.8234 40 1 3.3455 1.5151 -7.5320 41 1 4.3594 1.5952 -8.9928 42 1 7.2370 2.2847 -7.4544 43 1 9.9400 2.4134 -9.4049 44 1 3.3445 1.8193 -5.1280 45 1 3.9186 0.1349 -5.3227 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325449533.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:35 Heat of formation + Delta-G solvation = -13.536736 kcal Electronic energy + Delta-G solvation = -27233.537119 eV Core-core repulsion = 23378.793208 eV Total energy + Delta-G solvation = -3854.743912 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.69281 -39.73749 -37.79882 -37.60430 -35.30296 -32.59526 -31.65228 -30.67454 -29.44192 -28.43582 -27.40041 -26.38245 -24.79746 -24.53850 -23.26432 -21.72268 -21.05839 -19.72471 -19.00249 -18.68165 -17.26233 -16.82181 -16.74235 -16.39773 -15.95102 -15.63170 -15.25043 -15.08899 -14.50896 -14.44902 -14.06706 -13.86162 -13.57619 -13.25799 -13.22252 -12.80978 -12.73708 -12.48869 -12.40079 -12.19776 -11.87162 -11.70746 -11.47662 -11.27654 -10.91931 -10.78636 -10.65348 -10.52579 -10.32038 -10.28993 -10.03263 -9.84442 -9.79662 -9.68150 -9.61597 -9.35697 -8.95130 -8.69950 -7.01107 -5.80916 -3.09490 -0.06264 0.89181 1.28728 2.10159 2.77428 2.90980 3.41032 3.46325 3.46491 3.63301 4.06888 4.30113 4.54064 4.65971 4.67432 4.75978 4.88945 5.00247 5.11753 5.18648 5.22245 5.31021 5.36547 5.42928 5.49004 5.51866 5.58152 5.73422 5.81730 5.82568 5.89931 5.98528 6.10977 6.15619 6.31056 6.37843 6.52683 6.59440 6.82217 6.94979 7.05598 7.24674 7.36508 7.66253 7.92276 8.37599 9.49196 10.05556 10.40655 11.41565 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019926 B = 0.002518 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.863601 B =11116.633894 C =12142.339582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.380 6.380 3 C 0.130 3.870 4 C 0.135 3.865 5 N -0.466 5.466 6 C 0.010 3.990 7 S 0.200 5.800 8 C -0.267 4.267 9 C 0.607 3.393 10 O -0.523 6.523 11 N -0.609 5.609 12 C 0.083 3.917 13 C -0.109 4.109 14 C -0.103 4.103 15 H 0.082 0.918 16 C 0.185 3.815 17 H 0.050 0.950 18 C -0.168 4.168 19 N -0.722 5.722 20 C -0.237 4.237 21 H 0.069 0.931 22 C -0.012 4.012 23 N -0.933 5.933 24 Si 0.905 3.095 25 H -0.287 1.287 26 H -0.292 1.292 27 H -0.286 1.286 28 C 0.117 3.883 29 H 0.046 0.954 30 H 0.085 0.915 31 H 0.040 0.960 32 H 0.063 0.937 33 H 0.093 0.907 34 H 0.205 0.795 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.045 0.955 40 H 0.037 0.963 41 H 0.056 0.944 42 H 0.383 0.617 43 H 0.255 0.745 44 H 0.081 0.919 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.448 -1.354 20.387 22.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.299 6.299 3 C 0.051 3.949 4 C -0.004 4.004 5 N -0.179 5.179 6 C -0.285 4.285 7 S 0.457 5.543 8 C -0.392 4.392 9 C 0.395 3.605 10 O -0.401 6.401 11 N -0.341 5.341 12 C -0.041 4.041 13 C -0.147 4.147 14 C -0.123 4.123 15 H 0.101 0.899 16 C 0.075 3.925 17 H 0.068 0.932 18 C -0.228 4.228 19 N -0.363 5.363 20 C -0.368 4.368 21 H 0.087 0.913 22 C -0.208 4.208 23 N -0.582 5.582 24 Si 0.736 3.264 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.213 1.213 28 C -0.005 4.005 29 H 0.065 0.935 30 H 0.104 0.896 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.111 0.889 34 H 0.221 0.779 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.075 0.925 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.099 0.901 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.162 -1.665 20.259 22.297 hybrid contribution -0.243 0.049 -0.505 0.562 sum -9.404 -1.616 19.754 21.938 Atomic orbital electron populations 1.22722 0.80467 1.02777 1.00125 1.87884 1.19982 1.26510 1.95507 1.21011 0.85201 0.86173 1.02520 1.20197 0.97125 0.97663 0.85391 1.66086 1.05153 1.15465 1.31224 1.28917 0.95358 1.01855 1.02336 1.84408 1.05051 1.63765 1.01100 1.25594 0.96862 1.17725 0.99026 1.16232 0.85356 0.77243 0.81704 1.90789 1.13968 1.50835 1.84537 1.48382 1.07368 1.71658 1.06740 1.22362 0.79871 1.01422 1.00448 1.22544 0.98980 1.03111 0.90069 1.22714 0.92758 1.00582 0.96231 0.89923 1.20125 0.87644 0.97012 0.87707 0.93184 1.22495 0.97891 1.00712 1.01727 1.42350 1.19611 1.38267 1.36060 1.19164 1.02003 1.09824 1.05843 0.91272 1.24711 0.97675 0.98643 0.99790 1.69640 1.15416 1.29818 1.43279 0.86302 0.77985 0.79330 0.82761 1.21330 1.21755 1.21297 1.22371 0.98357 1.01915 0.77861 0.93527 0.89603 0.94165 0.91890 0.88949 0.77868 0.91007 0.90970 0.89765 0.89049 0.93564 0.94369 0.92485 0.78284 0.93485 0.90089 0.90799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 11.01 101.05 1.11 1.45 16 2 O -0.38 -5.16 10.69 -35.23 -0.38 -5.54 16 3 C 0.13 1.64 5.75 36.00 0.21 1.85 16 4 C 0.14 1.78 6.42 -83.89 -0.54 1.24 16 5 N -0.47 -5.59 10.50 -11.54 -0.12 -5.71 16 6 C 0.01 0.09 12.22 51.75 0.63 0.72 16 7 S 0.20 1.80 18.69 -107.50 -2.01 -0.21 16 8 C -0.27 -3.43 6.40 -37.09 -0.24 -3.66 16 9 C 0.61 8.89 7.81 -12.85 -0.10 8.79 16 10 O -0.52 -8.80 14.52 5.20 0.08 -8.73 16 11 N -0.61 -8.18 3.33 -172.06 -0.57 -8.76 16 12 C 0.08 0.95 5.19 -3.06 -0.02 0.94 16 13 C -0.11 -1.48 6.11 -24.90 -0.15 -1.63 16 14 C -0.10 -1.51 2.62 -88.47 -0.23 -1.74 16 15 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 16 C 0.19 3.32 2.41 -67.93 -0.16 3.16 16 17 H 0.05 0.92 8.03 -51.93 -0.42 0.50 16 18 C -0.17 -2.86 9.27 37.16 0.34 -2.51 16 19 N -0.72 -16.53 4.80 -53.43 -0.26 -16.78 16 20 C -0.24 -6.19 9.93 -15.06 -0.15 -6.34 16 21 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 22 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 23 N -0.93 -26.91 13.06 55.49 0.72 -26.19 16 24 Si 0.91 21.67 29.55 -169.99 -5.02 16.64 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 28 C 0.12 1.61 5.67 -2.53 -0.01 1.59 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.09 1.22 6.00 -51.93 -0.31 0.91 16 34 H 0.20 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.07 0.74 7.02 -51.93 -0.36 0.38 16 36 H 0.07 0.74 6.87 -51.93 -0.36 0.39 16 37 H 0.08 1.22 8.04 -51.93 -0.42 0.80 16 38 H 0.09 1.30 8.14 -51.92 -0.42 0.88 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.04 0.55 7.70 -51.93 -0.40 0.15 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.38 9.36 7.80 -40.82 -0.32 9.04 16 43 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 44 H 0.08 1.13 8.04 -51.93 -0.42 0.71 16 45 H 0.07 1.01 7.99 -51.93 -0.42 0.59 16 LS Contribution 379.59 15.07 5.72 5.72 Total: -1.00 -32.19 379.59 -8.01 -40.20 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -6.77 Total: 5.94 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: 0.60 Total: 3.41 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: -0.23 Total: -57.44 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -0.30 Total: -14.26 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -2.01 Total: -0.21 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.19 -8.01 -40.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325449533.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.666 kcal (2) G-P(sol) polarization free energy of solvation -32.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds