Wall clock time and date at job start Sat Apr 11 2020 05:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42897 * 113.99953 * 2 1 4 4 C 1.50698 * 109.47203 * 180.02562 * 3 2 1 5 5 N 1.30945 * 122.90423 * 270.00068 * 4 3 2 6 6 C 1.29431 * 117.36306 * 179.97438 * 5 4 3 7 7 S 1.70945 * 110.39245 * 359.72633 * 6 5 4 8 8 C 1.35656 * 122.90688 * 90.00206 * 4 3 2 9 9 C 1.46691 * 126.12877 * 0.02562 * 8 4 3 10 10 O 1.21688 * 119.99886 * 0.02562 * 9 8 4 11 11 N 1.34774 * 119.99832 * 180.02562 * 9 8 4 12 12 C 1.47025 * 125.65256 * 359.96688 * 11 9 8 13 13 C 1.54320 * 107.27206 * 181.10599 * 12 11 9 14 14 C 1.55160 * 102.94240 * 22.19908 * 13 12 11 15 15 H 1.09002 * 111.00188 * 82.60711 * 14 13 12 16 16 C 1.52995 * 111.00207 * 206.42112 * 14 13 12 17 17 H 1.08997 * 109.47126 * 59.24972 * 16 14 13 18 18 C 1.53001 * 109.46951 * 179.25029 * 16 14 13 19 19 N 1.46502 * 109.47094 * 299.24630 * 16 14 13 20 20 C 1.36934 * 119.99838 * 155.00085 * 19 16 14 21 21 H 1.07997 * 120.00252 * 0.02562 * 20 19 16 22 22 C 1.38814 * 120.00061 * 180.02562 * 20 19 16 23 23 N 1.31618 * 120.00058 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00092 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47093 * 60.00216 * 24 22 20 26 26 H 1.48500 * 109.47056 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47161 * 300.00228 * 24 22 20 28 28 C 1.47422 * 125.64893 * 180.02562 * 11 9 8 29 29 H 1.09002 * 109.47349 * 60.00032 * 1 2 3 30 30 H 1.08998 * 109.47127 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47461 * 299.99995 * 1 2 3 32 32 H 1.09006 * 109.47439 * 60.00226 * 3 2 1 33 33 H 1.08998 * 109.47293 * 300.00278 * 3 2 1 34 34 H 1.08001 * 124.80211 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.87699 * 61.69168 * 12 11 9 36 36 H 1.08999 * 110.01480 * 300.60635 * 12 11 9 37 37 H 1.08999 * 110.72084 * 263.83320 * 13 12 11 38 38 H 1.09008 * 110.71725 * 140.56150 * 13 12 11 39 39 H 1.09005 * 109.47191 * 54.73120 * 18 16 14 40 40 H 1.09001 * 109.47113 * 294.73227 * 18 16 14 41 41 H 1.09001 * 109.46902 * 174.72943 * 18 16 14 42 42 H 0.96999 * 120.00289 * 335.00400 * 19 16 14 43 43 H 0.97002 * 120.00115 * 180.02562 * 23 22 20 44 44 H 1.08999 * 110.36915 * 36.97749 * 28 11 9 45 45 H 1.09002 * 110.36526 * 274.66463 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5124 1.1865 -0.0006 5 7 4.2220 1.1301 1.0985 6 6 5.5061 1.0279 0.9729 7 16 5.9416 0.9855 -0.6796 8 6 4.2466 1.1285 -1.1399 9 6 3.7229 1.1708 -2.5094 10 8 2.5249 1.2667 -2.7000 11 7 4.5686 1.1034 -3.5566 12 6 6.0318 0.9871 -3.4705 13 6 6.5761 0.9722 -4.9144 14 6 5.4377 1.6502 -5.7219 15 1 5.5102 2.7362 -5.6629 16 6 5.4441 1.1813 -7.1782 17 1 5.3151 0.0995 -7.2122 18 6 4.2988 1.8557 -7.9361 19 7 6.7204 1.5407 -7.8013 20 6 7.1840 0.8263 -8.8736 21 1 6.6086 -0.0019 -9.2602 22 6 8.3935 1.1664 -9.4637 23 7 9.0950 2.1754 -8.9923 24 14 9.0256 0.1922 -10.9269 25 1 8.0463 0.2794 -12.0399 26 1 10.3279 0.7523 -11.3691 27 1 9.2046 -1.2289 -10.5353 28 6 4.1800 1.1354 -4.9783 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8464 -0.8899 34 1 6.2035 0.9729 1.7958 35 1 6.3006 0.0604 -2.9634 36 1 6.4424 1.8387 -2.9281 37 1 6.7350 -0.0506 -5.2561 38 1 7.4969 1.5512 -4.9854 39 1 4.3756 2.9371 -7.8234 40 1 3.3455 1.5151 -7.5320 41 1 4.3594 1.5952 -8.9928 42 1 7.2370 2.2847 -7.4544 43 1 9.9400 2.4134 -9.4049 44 1 3.3445 1.8193 -5.1280 45 1 3.9186 0.1349 -5.3227 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325449533.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:34 Heat of formation + Delta-G solvation = -35.734526 kcal Electronic energy + Delta-G solvation = -27234.499688 eV Core-core repulsion = 23378.793208 eV Total energy + Delta-G solvation = -3855.706480 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.65346 -40.73929 -38.96617 -38.54039 -36.82275 -34.29778 -32.66731 -31.92943 -30.85048 -29.59229 -28.57275 -27.20787 -26.15845 -25.59402 -24.67648 -22.94385 -22.14436 -21.09839 -19.85561 -19.65472 -19.09081 -17.87063 -17.66099 -17.51303 -17.00287 -16.59431 -16.49769 -16.07108 -15.86518 -15.46576 -15.30613 -15.11229 -14.89342 -14.71550 -14.20770 -13.98838 -13.88043 -13.81420 -13.48927 -13.31112 -13.21015 -12.92911 -12.74181 -12.52784 -12.34332 -12.28273 -12.21382 -12.00928 -11.74802 -11.53297 -11.41928 -11.36001 -10.90309 -10.72529 -10.64381 -10.56102 -10.20028 -9.70947 -8.94662 -7.88361 -5.14830 -0.89135 0.10571 0.52022 1.24398 1.51267 1.52321 1.58104 1.73025 1.89266 2.60273 2.83925 3.19911 3.36449 3.45717 3.56666 3.66210 3.82903 3.86413 4.05501 4.14582 4.25556 4.33238 4.34683 4.44607 4.46389 4.52147 4.58495 4.59284 4.64803 4.70785 4.80724 4.84827 4.89853 4.95067 5.04928 5.10073 5.18967 5.30552 5.39215 5.57945 5.62690 6.10055 6.23987 6.34159 6.51638 6.85016 7.41452 8.17164 8.41069 9.34605 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019926 B = 0.002518 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.863601 B =11116.633894 C =12142.339582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.406 6.406 3 C 0.129 3.871 4 C 0.126 3.874 5 N -0.494 5.494 6 C 0.025 3.975 7 S 0.252 5.748 8 C -0.303 4.303 9 C 0.604 3.396 10 O -0.555 6.555 11 N -0.610 5.610 12 C 0.088 3.912 13 C -0.105 4.105 14 C -0.093 4.093 15 H 0.081 0.919 16 C 0.183 3.817 17 H 0.048 0.952 18 C -0.161 4.161 19 N -0.729 5.729 20 C -0.231 4.231 21 H 0.072 0.928 22 C -0.072 4.072 23 N -0.967 5.967 24 Si 0.963 3.037 25 H -0.284 1.284 26 H -0.299 1.299 27 H -0.279 1.279 28 C 0.123 3.877 29 H 0.043 0.957 30 H 0.098 0.902 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.246 0.754 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.043 0.957 40 H 0.066 0.934 41 H 0.035 0.965 42 H 0.374 0.626 43 H 0.249 0.751 44 H 0.079 0.921 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.145 -2.096 21.979 23.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.326 6.326 3 C 0.051 3.949 4 C -0.014 4.014 5 N -0.208 5.208 6 C -0.268 4.268 7 S 0.510 5.490 8 C -0.428 4.428 9 C 0.393 3.607 10 O -0.436 6.436 11 N -0.342 5.342 12 C -0.035 4.035 13 C -0.143 4.143 14 C -0.113 4.113 15 H 0.099 0.901 16 C 0.074 3.926 17 H 0.066 0.934 18 C -0.220 4.220 19 N -0.369 5.369 20 C -0.363 4.363 21 H 0.090 0.910 22 C -0.264 4.264 23 N -0.618 5.618 24 Si 0.793 3.207 25 H -0.210 1.210 26 H -0.225 1.225 27 H -0.205 1.205 28 C 0.001 3.999 29 H 0.062 0.938 30 H 0.117 0.883 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.262 0.738 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.063 0.937 40 H 0.084 0.916 41 H 0.055 0.945 42 H 0.207 0.793 43 H 0.058 0.942 44 H 0.097 0.903 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.879 -2.433 21.856 23.716 hybrid contribution -0.377 0.256 -0.917 1.024 sum -9.255 -2.177 20.939 22.997 Atomic orbital electron populations 1.22908 0.78842 1.03920 1.00883 1.87835 1.21932 1.27163 1.95644 1.20991 0.85630 0.85920 1.02383 1.20347 0.97467 0.97563 0.85997 1.66138 1.06461 1.17313 1.30890 1.29664 0.94935 0.98704 1.03538 1.84118 1.01672 1.62557 1.00687 1.25499 0.99529 1.19837 0.97929 1.16499 0.85062 0.76641 0.82519 1.90762 1.15308 1.52301 1.85194 1.48387 1.08058 1.71423 1.06325 1.22396 0.78687 1.03093 0.99313 1.22451 0.98366 1.02225 0.91281 1.22495 0.94028 1.00489 0.94321 0.90056 1.20281 0.85811 0.96998 0.89467 0.93391 1.22372 0.98833 1.00515 1.00322 1.42483 1.21136 1.37679 1.35643 1.19497 1.01553 1.09314 1.05919 0.90973 1.25391 0.98455 1.00025 1.02553 1.69779 1.15657 1.31609 1.44722 0.85367 0.76927 0.78317 0.80075 1.21014 1.22531 1.20511 1.22236 0.97564 1.01888 0.78254 0.93833 0.88314 0.92311 0.90664 0.90315 0.73767 0.89302 0.89275 0.90617 0.89679 0.93734 0.91556 0.94540 0.79349 0.94222 0.90297 0.90591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 11.01 113.37 1.25 1.82 16 2 O -0.41 -11.01 10.69 -148.98 -1.59 -12.61 16 3 C 0.13 3.28 5.75 71.24 0.41 3.68 16 4 C 0.13 3.21 6.42 42.09 0.27 3.48 16 5 N -0.49 -10.90 10.50 -190.41 -2.00 -12.90 16 6 C 0.03 0.36 12.22 130.60 1.60 1.95 16 7 S 0.25 3.80 18.69 -56.49 -1.06 2.74 16 8 C -0.30 -7.41 6.40 23.88 0.15 -7.26 16 9 C 0.60 17.35 7.81 86.45 0.68 18.03 16 10 O -0.55 -18.91 14.52 -4.31 -0.06 -18.98 16 11 N -0.61 -15.67 3.33 -816.49 -2.72 -18.39 16 12 C 0.09 1.86 5.19 86.73 0.45 2.31 16 13 C -0.11 -2.74 6.11 31.78 0.19 -2.54 16 14 C -0.09 -2.66 2.62 -9.40 -0.02 -2.69 16 15 H 0.08 2.37 8.14 -2.39 -0.02 2.36 16 16 C 0.18 6.46 2.41 44.99 0.11 6.57 16 17 H 0.05 1.73 8.03 -2.39 -0.02 1.71 16 18 C -0.16 -5.34 9.27 71.98 0.67 -4.67 16 19 N -0.73 -33.42 4.80 -322.95 -1.55 -34.97 16 20 C -0.23 -12.02 9.93 84.03 0.83 -11.19 16 21 H 0.07 3.65 7.83 -2.91 -0.02 3.63 16 22 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 23 N -0.97 -56.42 13.06 21.65 0.28 -56.14 16 24 Si 0.96 44.65 29.55 68.60 2.03 46.68 16 25 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 26 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 27 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 28 C 0.12 3.25 5.67 86.86 0.49 3.75 16 29 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 33 H 0.08 2.16 6.00 -2.39 -0.01 2.15 16 34 H 0.25 1.14 8.06 -2.91 -0.02 1.11 16 35 H 0.09 1.60 7.02 -2.39 -0.02 1.59 16 36 H 0.09 1.60 6.87 -2.39 -0.02 1.59 16 37 H 0.08 2.11 8.04 -2.39 -0.02 2.09 16 38 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 39 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 40 H 0.07 1.82 7.70 -2.39 -0.02 1.80 16 41 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.37 18.44 7.80 -92.71 -0.72 17.72 16 43 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 44 H 0.08 2.14 8.04 -2.39 -0.02 2.12 16 45 H 0.08 1.99 7.99 -2.39 -0.02 1.97 16 Total: -1.00 -70.04 379.59 1.16 -68.88 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: 0.28 Total: 25.90 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: 7.54 Total: 9.77 kcal Atomic # 7 Polarization: -116.41 SS G_CDS: -5.98 Total: -122.39 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: -1.65 Total: -31.58 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Atomic # 16 Polarization: 3.80 SS G_CDS: -1.06 Total: 2.74 kcal Total: -70.04 1.16 -68.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325449533.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.146 kcal (2) G-P(sol) polarization free energy of solvation -70.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds