Wall clock time and date at job start Sat Apr 11 2020 05:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00116 * 2 1 4 4 C 1.50705 * 109.47191 * 180.02562 * 3 2 1 5 5 N 1.30943 * 122.90141 * 270.19323 * 4 3 2 6 6 C 1.29428 * 117.36024 * 180.30357 * 5 4 3 7 7 S 1.70954 * 110.39335 * 359.73324 * 6 5 4 8 8 C 1.35657 * 122.90116 * 89.99745 * 4 3 2 9 9 C 1.46675 * 126.13573 * 0.02562 * 8 4 3 10 10 O 1.21690 * 119.99952 * 359.70376 * 9 8 4 11 11 N 1.34777 * 120.00104 * 179.71369 * 9 8 4 12 12 C 1.47015 * 125.65042 * 359.96709 * 11 9 8 13 13 C 1.54327 * 107.27408 * 178.96544 * 12 11 9 14 14 C 1.55155 * 102.93990 * 337.80736 * 13 12 11 15 15 H 1.08999 * 111.00406 * 277.42751 * 14 13 12 16 16 C 1.52996 * 111.00314 * 153.57290 * 14 13 12 17 17 H 1.08996 * 109.47866 * 306.35415 * 16 14 13 18 18 C 1.53010 * 109.47060 * 66.35082 * 16 14 13 19 19 N 1.46496 * 109.47555 * 186.34895 * 16 14 13 20 20 C 1.36934 * 120.00265 * 154.99947 * 19 16 14 21 21 H 1.07997 * 120.00555 * 0.02562 * 20 19 16 22 22 C 1.38816 * 119.99934 * 180.02562 * 20 19 16 23 23 N 1.31620 * 120.00009 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 120.00129 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47458 * 89.99737 * 24 22 20 26 26 H 1.48504 * 109.46847 * 210.00153 * 24 22 20 27 27 H 1.48504 * 109.47108 * 329.99528 * 24 22 20 28 28 C 1.47426 * 125.64732 * 179.97438 * 11 9 8 29 29 H 1.09005 * 109.47017 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47031 * 299.99700 * 1 2 3 31 31 H 1.08999 * 109.47113 * 59.99778 * 1 2 3 32 32 H 1.09000 * 109.46852 * 60.00088 * 3 2 1 33 33 H 1.09001 * 109.47152 * 300.00144 * 3 2 1 34 34 H 1.08000 * 124.80700 * 179.69274 * 6 5 4 35 35 H 1.08999 * 109.88555 * 298.38294 * 12 11 9 36 36 H 1.09004 * 109.88121 * 59.54994 * 12 11 9 37 37 H 1.08996 * 110.71695 * 96.16900 * 13 12 11 38 38 H 1.08996 * 110.72053 * 219.26621 * 13 12 11 39 39 H 1.09005 * 109.46466 * 60.00091 * 18 16 14 40 40 H 1.08996 * 109.47004 * 180.02562 * 18 16 14 41 41 H 1.09000 * 109.47116 * 300.00099 * 18 16 14 42 42 H 0.97008 * 119.99836 * 335.00338 * 19 16 14 43 43 H 0.96998 * 119.99971 * 179.97438 * 23 22 20 44 44 H 1.08998 * 110.36718 * 322.94266 * 28 11 9 45 45 H 1.09005 * 110.36600 * 85.26828 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 7 4.2218 1.1264 1.0985 6 6 5.5064 1.0312 0.9730 7 16 5.9430 1.0017 -0.6796 8 6 4.2467 1.1284 -1.1399 9 6 3.7231 1.1706 -2.5094 10 8 2.5245 1.2605 -2.7000 11 7 4.5692 1.1094 -3.5566 12 6 6.0328 1.0003 -3.4704 13 6 6.5734 0.9359 -4.9145 14 6 5.3449 0.4427 -5.7237 15 1 5.2499 -0.6417 -5.6674 16 6 5.4233 0.9094 -7.1786 17 1 5.5614 1.9902 -7.2066 18 6 6.6047 0.2263 -7.8704 19 7 4.1816 0.5577 -7.8719 20 6 3.7837 1.2737 -8.9692 21 1 4.3853 2.0974 -9.3239 22 6 2.6068 0.9407 -9.6258 23 7 2.2246 1.6286 -10.6809 24 14 1.5656 -0.4836 -9.0121 25 1 0.5793 0.0154 -8.0205 26 1 0.8483 -1.1014 -10.1562 27 1 2.4418 -1.4974 -8.3717 28 6 4.1805 1.1410 -4.9783 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 6.2040 0.9785 1.7958 35 1 6.4403 1.8733 -2.9607 36 1 6.3058 0.0929 -2.9316 37 1 6.8870 1.9233 -5.2531 38 1 7.3968 0.2254 -4.9867 39 1 6.4665 -0.8546 -7.8425 40 1 6.6608 0.5591 -8.9068 41 1 7.5286 0.4879 -7.3546 42 1 3.6413 -0.1824 -7.5536 43 1 1.4024 1.3957 -11.1399 44 1 3.2504 0.5932 -5.1296 45 1 4.0751 2.1708 -5.3200 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325449534.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:38 Heat of formation + Delta-G solvation = -8.590990 kcal Electronic energy + Delta-G solvation = -27533.263922 eV Core-core repulsion = 23678.734474 eV Total energy + Delta-G solvation = -3854.529448 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.70896 -39.78207 -37.85396 -37.58491 -35.44914 -32.62471 -31.68723 -30.89525 -29.19137 -28.94503 -27.82681 -26.34430 -24.78692 -24.00642 -23.61756 -21.66033 -21.01327 -19.93009 -19.02472 -18.74199 -17.60117 -16.97778 -16.65062 -16.31365 -16.00448 -15.60074 -15.24876 -15.04609 -14.65873 -14.48544 -14.12994 -14.09446 -13.76429 -13.21919 -13.12932 -12.87318 -12.65067 -12.57567 -12.38399 -12.24657 -11.96061 -11.78769 -11.69337 -11.43690 -11.04846 -10.92364 -10.71582 -10.65155 -10.32818 -10.29464 -10.05047 -9.90338 -9.83754 -9.60283 -9.58070 -9.37772 -8.95090 -8.69610 -7.29664 -5.77663 -3.13724 -0.09080 0.84222 1.23112 2.08736 2.76952 2.92806 3.39153 3.42642 3.47878 3.62815 4.06265 4.26596 4.45495 4.59519 4.63657 4.68825 4.76112 4.84460 5.08757 5.15269 5.22850 5.27400 5.34992 5.39404 5.44444 5.51289 5.59133 5.60021 5.70725 5.73809 5.74611 5.87323 6.00767 6.08721 6.15514 6.23430 6.33566 6.42323 6.72536 6.94376 6.98889 7.23044 7.36107 7.95429 7.97230 8.41132 9.19094 9.91916 10.10618 11.40563 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012883 B = 0.003339 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.960145 B = 8384.825567 C =10190.311706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.380 6.380 3 C 0.128 3.872 4 C 0.136 3.864 5 N -0.464 5.464 6 C 0.012 3.988 7 S 0.189 5.811 8 C -0.263 4.263 9 C 0.605 3.395 10 O -0.514 6.514 11 N -0.612 5.612 12 C 0.086 3.914 13 C -0.117 4.117 14 C -0.107 4.107 15 H 0.082 0.918 16 C 0.190 3.810 17 H 0.059 0.941 18 C -0.165 4.165 19 N -0.749 5.749 20 C -0.243 4.243 21 H 0.091 0.909 22 C 0.007 3.993 23 N -0.933 5.933 24 Si 0.880 3.120 25 H -0.283 1.283 26 H -0.291 1.291 27 H -0.277 1.277 28 C 0.120 3.880 29 H 0.086 0.914 30 H 0.040 0.960 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.093 0.907 34 H 0.205 0.795 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.045 0.955 40 H 0.059 0.941 41 H 0.041 0.959 42 H 0.361 0.639 43 H 0.259 0.741 44 H 0.083 0.917 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.421 -1.409 24.399 26.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.299 6.299 3 C 0.050 3.950 4 C -0.002 4.002 5 N -0.177 5.177 6 C -0.283 4.283 7 S 0.445 5.555 8 C -0.388 4.388 9 C 0.392 3.608 10 O -0.392 6.392 11 N -0.345 5.345 12 C -0.038 4.038 13 C -0.155 4.155 14 C -0.127 4.127 15 H 0.100 0.900 16 C 0.081 3.919 17 H 0.077 0.923 18 C -0.225 4.225 19 N -0.392 5.392 20 C -0.373 4.373 21 H 0.108 0.892 22 C -0.189 4.189 23 N -0.581 5.581 24 Si 0.711 3.289 25 H -0.209 1.209 26 H -0.218 1.218 27 H -0.204 1.204 28 C -0.001 4.001 29 H 0.104 0.896 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.111 0.889 34 H 0.221 0.779 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.060 0.940 42 H 0.194 0.806 43 H 0.069 0.931 44 H 0.101 0.899 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 10.597 -1.404 24.213 26.468 hybrid contribution -1.689 -0.841 0.541 1.963 sum 8.908 -2.246 24.755 26.405 Atomic orbital electron populations 1.22735 0.80345 1.02837 1.00209 1.87878 1.20087 1.26398 1.95523 1.21029 0.85107 0.86298 1.02613 1.20223 0.97208 0.97447 0.85347 1.66081 1.05140 1.15295 1.31233 1.28893 0.95345 1.01996 1.02077 1.84202 1.05310 1.64513 1.01460 1.25614 0.96607 1.17473 0.99090 1.16239 0.85451 0.77494 0.81650 1.90832 1.13891 1.50111 1.84351 1.48405 1.06912 1.72109 1.07098 1.22243 0.80552 1.01510 0.99512 1.22634 0.98111 1.03120 0.91682 1.22750 0.93268 1.00471 0.96226 0.89952 1.20126 0.87156 0.97709 0.86950 0.92289 1.22414 0.97711 1.00667 1.01667 1.42797 1.23785 1.38362 1.34233 1.19025 1.04925 1.10764 1.02581 0.89169 1.24648 0.97949 0.98796 0.97493 1.69695 1.24814 1.42096 1.21492 0.86617 0.80998 0.83260 0.78049 1.20907 1.21775 1.20366 1.22344 0.98957 1.02129 0.76676 0.89572 0.94159 0.93385 0.91844 0.88876 0.77880 0.90892 0.91003 0.89750 0.89540 0.93586 0.92208 0.94037 0.80648 0.93051 0.89868 0.90120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 11.01 101.05 1.11 1.49 16 2 O -0.38 -5.51 10.69 -35.23 -0.38 -5.89 16 3 C 0.13 1.72 5.74 36.01 0.21 1.92 16 4 C 0.14 1.82 6.42 -83.89 -0.54 1.28 16 5 N -0.46 -5.54 10.50 -11.53 -0.12 -5.66 16 6 C 0.01 0.10 12.22 51.75 0.63 0.73 16 7 S 0.19 1.54 18.70 -107.50 -2.01 -0.47 16 8 C -0.26 -3.39 6.40 -37.10 -0.24 -3.63 16 9 C 0.60 9.30 7.81 -12.85 -0.10 9.20 16 10 O -0.51 -9.54 14.53 5.20 0.08 -9.46 16 11 N -0.61 -8.39 3.33 -172.07 -0.57 -8.96 16 12 C 0.09 0.84 5.19 -3.07 -0.02 0.82 16 13 C -0.12 -1.14 5.59 -24.90 -0.14 -1.28 16 14 C -0.11 -1.47 2.62 -88.48 -0.23 -1.70 16 15 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 16 C 0.19 3.25 2.40 -67.93 -0.16 3.09 16 17 H 0.06 1.04 8.05 -51.93 -0.42 0.63 16 18 C -0.16 -2.56 9.34 37.16 0.35 -2.21 16 19 N -0.75 -16.71 4.62 -53.43 -0.25 -16.96 16 20 C -0.24 -6.61 10.41 -15.06 -0.16 -6.77 16 21 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 22 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 23 N -0.93 -29.08 13.97 55.49 0.78 -28.30 16 24 Si 0.88 22.19 27.74 -169.99 -4.71 17.48 16 25 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 27 H -0.28 -6.58 6.52 56.52 0.37 -6.22 16 28 C 0.12 1.87 6.08 -2.54 -0.02 1.86 16 29 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.09 1.34 6.01 -51.93 -0.31 1.03 16 34 H 0.20 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.07 0.60 7.03 -51.93 -0.36 0.23 16 36 H 0.07 0.62 6.87 -51.93 -0.36 0.26 16 37 H 0.08 0.78 8.01 -51.93 -0.42 0.36 16 38 H 0.09 0.68 8.13 -51.93 -0.42 0.25 16 39 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.04 0.50 7.50 -51.93 -0.39 0.12 16 42 H 0.36 8.11 5.66 -40.82 -0.23 7.88 16 43 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 44 H 0.08 1.50 8.04 -51.93 -0.42 1.08 16 45 H 0.08 1.33 8.04 -51.93 -0.42 0.92 16 LS Contribution 376.29 15.07 5.67 5.67 Total: -1.00 -34.93 376.29 -7.63 -42.57 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -6.72 Total: 5.07 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: 0.60 Total: 4.92 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: -0.17 Total: -59.88 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: -0.30 Total: -15.35 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.71 Total: 17.48 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -2.01 Total: -0.47 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.93 -7.63 -42.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325449534.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.978 kcal (2) G-P(sol) polarization free energy of solvation -34.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds