Wall clock time and date at job start Sat Apr 11 2020 05:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00116 * 2 1 4 4 C 1.50705 * 109.47191 * 180.02562 * 3 2 1 5 5 N 1.30943 * 122.90141 * 270.19323 * 4 3 2 6 6 C 1.29428 * 117.36024 * 180.30357 * 5 4 3 7 7 S 1.70954 * 110.39335 * 359.73324 * 6 5 4 8 8 C 1.35657 * 122.90116 * 89.99745 * 4 3 2 9 9 C 1.46675 * 126.13573 * 0.02562 * 8 4 3 10 10 O 1.21690 * 119.99952 * 359.70376 * 9 8 4 11 11 N 1.34777 * 120.00104 * 179.71369 * 9 8 4 12 12 C 1.47015 * 125.65042 * 359.96709 * 11 9 8 13 13 C 1.54327 * 107.27408 * 178.96544 * 12 11 9 14 14 C 1.55155 * 102.93990 * 337.80736 * 13 12 11 15 15 H 1.08999 * 111.00406 * 277.42751 * 14 13 12 16 16 C 1.52996 * 111.00314 * 153.57290 * 14 13 12 17 17 H 1.08996 * 109.47866 * 306.35415 * 16 14 13 18 18 C 1.53010 * 109.47060 * 66.35082 * 16 14 13 19 19 N 1.46496 * 109.47555 * 186.34895 * 16 14 13 20 20 C 1.36934 * 120.00265 * 154.99947 * 19 16 14 21 21 H 1.07997 * 120.00555 * 0.02562 * 20 19 16 22 22 C 1.38816 * 119.99934 * 180.02562 * 20 19 16 23 23 N 1.31620 * 120.00009 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 120.00129 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47458 * 89.99737 * 24 22 20 26 26 H 1.48504 * 109.46847 * 210.00153 * 24 22 20 27 27 H 1.48504 * 109.47108 * 329.99528 * 24 22 20 28 28 C 1.47426 * 125.64732 * 179.97438 * 11 9 8 29 29 H 1.09005 * 109.47017 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47031 * 299.99700 * 1 2 3 31 31 H 1.08999 * 109.47113 * 59.99778 * 1 2 3 32 32 H 1.09000 * 109.46852 * 60.00088 * 3 2 1 33 33 H 1.09001 * 109.47152 * 300.00144 * 3 2 1 34 34 H 1.08000 * 124.80700 * 179.69274 * 6 5 4 35 35 H 1.08999 * 109.88555 * 298.38294 * 12 11 9 36 36 H 1.09004 * 109.88121 * 59.54994 * 12 11 9 37 37 H 1.08996 * 110.71695 * 96.16900 * 13 12 11 38 38 H 1.08996 * 110.72053 * 219.26621 * 13 12 11 39 39 H 1.09005 * 109.46466 * 60.00091 * 18 16 14 40 40 H 1.08996 * 109.47004 * 180.02562 * 18 16 14 41 41 H 1.09000 * 109.47116 * 300.00099 * 18 16 14 42 42 H 0.97008 * 119.99836 * 335.00338 * 19 16 14 43 43 H 0.96998 * 119.99971 * 179.97438 * 23 22 20 44 44 H 1.08998 * 110.36718 * 322.94266 * 28 11 9 45 45 H 1.09005 * 110.36600 * 85.26828 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 7 4.2218 1.1264 1.0985 6 6 5.5064 1.0312 0.9730 7 16 5.9430 1.0017 -0.6796 8 6 4.2467 1.1284 -1.1399 9 6 3.7231 1.1706 -2.5094 10 8 2.5245 1.2605 -2.7000 11 7 4.5692 1.1094 -3.5566 12 6 6.0328 1.0003 -3.4704 13 6 6.5734 0.9359 -4.9145 14 6 5.3449 0.4427 -5.7237 15 1 5.2499 -0.6417 -5.6674 16 6 5.4233 0.9094 -7.1786 17 1 5.5614 1.9902 -7.2066 18 6 6.6047 0.2263 -7.8704 19 7 4.1816 0.5577 -7.8719 20 6 3.7837 1.2737 -8.9692 21 1 4.3853 2.0974 -9.3239 22 6 2.6068 0.9407 -9.6258 23 7 2.2246 1.6286 -10.6809 24 14 1.5656 -0.4836 -9.0121 25 1 0.5793 0.0154 -8.0205 26 1 0.8483 -1.1014 -10.1562 27 1 2.4418 -1.4974 -8.3717 28 6 4.1805 1.1410 -4.9783 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 6.2040 0.9785 1.7958 35 1 6.4403 1.8733 -2.9607 36 1 6.3058 0.0929 -2.9316 37 1 6.8870 1.9233 -5.2531 38 1 7.3968 0.2254 -4.9867 39 1 6.4665 -0.8546 -7.8425 40 1 6.6608 0.5591 -8.9068 41 1 7.5286 0.4879 -7.3546 42 1 3.6413 -0.1824 -7.5536 43 1 1.4024 1.3957 -11.1399 44 1 3.2504 0.5932 -5.1296 45 1 4.0751 2.1708 -5.3200 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325449534.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:37 Heat of formation + Delta-G solvation = -34.993721 kcal Electronic energy + Delta-G solvation = -27534.408830 eV Core-core repulsion = 23678.734474 eV Total energy + Delta-G solvation = -3855.674356 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.67010 -40.75676 -39.03112 -38.58255 -36.96566 -34.38599 -32.79500 -32.25689 -30.43883 -30.20010 -28.84068 -27.21284 -25.70875 -25.63190 -24.77721 -22.89679 -22.09938 -21.31766 -19.92365 -19.80008 -19.35838 -17.95162 -17.65676 -17.39559 -17.07547 -16.66310 -16.54708 -16.15687 -15.96277 -15.59096 -15.27750 -15.21562 -14.95520 -14.61320 -14.27133 -14.14665 -13.97343 -13.83628 -13.66503 -13.39227 -13.26384 -13.00476 -12.82344 -12.55648 -12.40433 -12.32378 -12.12995 -11.94496 -11.82787 -11.70154 -11.43934 -11.36574 -10.99767 -10.75703 -10.65280 -10.59654 -10.19673 -9.71117 -9.29609 -8.01739 -5.32732 -0.90206 0.09036 0.50561 1.23880 1.34590 1.38698 1.43444 1.72176 1.87758 2.47237 2.81298 3.18245 3.30756 3.33010 3.53243 3.57976 3.77694 3.84318 3.98185 4.05797 4.17925 4.31080 4.33437 4.41085 4.46902 4.47053 4.54120 4.58006 4.61455 4.75123 4.80187 4.82800 4.88390 4.92611 5.03813 5.09254 5.16632 5.28075 5.39845 5.64247 5.80772 6.04613 6.23182 6.25918 6.52083 6.85395 7.10131 7.88170 8.03727 9.20128 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012883 B = 0.003339 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.960145 B = 8384.825567 C =10190.311706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.405 6.405 3 C 0.127 3.873 4 C 0.126 3.874 5 N -0.495 5.495 6 C 0.023 3.977 7 S 0.274 5.726 8 C -0.305 4.305 9 C 0.597 3.403 10 O -0.564 6.564 11 N -0.611 5.611 12 C 0.079 3.921 13 C -0.105 4.105 14 C -0.097 4.097 15 H 0.088 0.912 16 C 0.183 3.817 17 H 0.050 0.950 18 C -0.155 4.155 19 N -0.755 5.755 20 C -0.216 4.216 21 H 0.063 0.937 22 C -0.063 4.063 23 N -0.985 5.985 24 Si 0.942 3.058 25 H -0.290 1.290 26 H -0.296 1.296 27 H -0.252 1.252 28 C 0.120 3.880 29 H 0.099 0.901 30 H 0.061 0.939 31 H 0.037 0.963 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.249 0.751 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.122 0.878 39 H 0.049 0.951 40 H 0.030 0.970 41 H 0.086 0.914 42 H 0.361 0.639 43 H 0.255 0.745 44 H 0.048 0.952 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.194 -2.850 27.486 31.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.324 6.324 3 C 0.048 3.952 4 C -0.014 4.014 5 N -0.210 5.210 6 C -0.270 4.270 7 S 0.532 5.468 8 C -0.429 4.429 9 C 0.385 3.615 10 O -0.445 6.445 11 N -0.343 5.343 12 C -0.043 4.043 13 C -0.143 4.143 14 C -0.117 4.117 15 H 0.106 0.894 16 C 0.075 3.925 17 H 0.068 0.932 18 C -0.214 4.214 19 N -0.398 5.398 20 C -0.347 4.347 21 H 0.081 0.919 22 C -0.254 4.254 23 N -0.636 5.636 24 Si 0.771 3.229 25 H -0.217 1.217 26 H -0.223 1.223 27 H -0.177 1.177 28 C -0.002 4.002 29 H 0.117 0.883 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.265 0.735 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.141 0.859 39 H 0.068 0.932 40 H 0.049 0.951 41 H 0.104 0.896 42 H 0.194 0.806 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 14.479 -2.866 27.347 31.076 hybrid contribution -2.706 -0.305 -0.333 2.744 sum 11.773 -3.171 27.013 29.638 Atomic orbital electron populations 1.22899 0.78988 1.03908 1.00747 1.87825 1.21789 1.27204 1.95623 1.20994 0.86177 0.85894 1.02128 1.20265 0.97219 0.97732 0.86234 1.66125 1.06697 1.17400 1.30747 1.29714 0.94808 0.98656 1.03867 1.83707 1.00416 1.62532 1.00124 1.25461 1.00301 1.19772 0.97409 1.16692 0.85108 0.76739 0.82943 1.90794 1.16092 1.52293 1.85344 1.48442 1.08693 1.71428 1.05774 1.22573 0.77849 1.03616 1.00274 1.22697 0.96878 1.04508 0.90258 1.22578 0.94749 1.00459 0.93906 0.89365 1.20410 0.85602 0.97639 0.88841 0.93153 1.22265 0.98594 1.00474 1.00102 1.42891 1.25786 1.37838 1.33256 1.19023 1.03612 1.09309 1.02788 0.91948 1.25359 0.99811 1.01933 0.98290 1.69856 1.25587 1.44541 1.23606 0.85592 0.79369 0.80847 0.77069 1.21655 1.22332 1.17659 1.22141 0.98684 1.00732 0.78656 0.88265 0.92049 0.94389 0.90583 0.90957 0.73528 0.88585 0.88861 0.88783 0.85948 0.93199 0.95110 0.89573 0.80625 0.93568 0.93304 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 11.01 113.37 1.25 1.93 16 2 O -0.41 -12.12 10.69 -148.98 -1.59 -13.71 16 3 C 0.13 3.53 5.74 71.24 0.41 3.94 16 4 C 0.13 3.29 6.42 42.09 0.27 3.56 16 5 N -0.50 -10.78 10.50 -190.40 -2.00 -12.78 16 6 C 0.02 0.28 12.22 130.60 1.60 1.88 16 7 S 0.27 3.30 18.70 -56.49 -1.06 2.25 16 8 C -0.30 -7.50 6.40 23.88 0.15 -7.34 16 9 C 0.60 18.57 7.81 86.45 0.68 19.24 16 10 O -0.56 -22.33 14.53 -4.32 -0.06 -22.39 16 11 N -0.61 -16.15 3.33 -816.53 -2.72 -18.86 16 12 C 0.08 1.23 5.19 86.73 0.45 1.68 16 13 C -0.11 -1.56 5.59 31.78 0.18 -1.38 16 14 C -0.10 -2.45 2.62 -9.41 -0.02 -2.47 16 15 H 0.09 2.18 8.14 -2.39 -0.02 2.17 16 16 C 0.18 6.01 2.40 44.99 0.11 6.11 16 17 H 0.05 1.75 8.05 -2.39 -0.02 1.73 16 18 C -0.15 -4.39 9.34 71.99 0.67 -3.72 16 19 N -0.75 -33.69 4.62 -322.95 -1.49 -35.19 16 20 C -0.22 -12.06 10.41 84.03 0.87 -11.18 16 21 H 0.06 3.78 8.06 -2.91 -0.02 3.76 16 22 C -0.06 -3.73 5.50 84.86 0.47 -3.26 16 23 N -0.98 -63.77 13.97 21.65 0.30 -63.47 16 24 Si 0.94 47.08 27.74 68.60 1.90 48.98 16 25 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 26 H -0.30 -14.97 7.11 99.48 0.71 -14.26 16 27 H -0.25 -11.35 6.52 99.48 0.65 -10.70 16 28 C 0.12 3.78 6.08 86.85 0.53 4.30 16 29 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 30 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.07 2.27 6.01 -2.39 -0.01 2.26 16 34 H 0.25 0.58 8.06 -2.91 -0.02 0.56 16 35 H 0.10 1.10 7.03 -2.39 -0.02 1.08 16 36 H 0.09 1.09 6.87 -2.39 -0.02 1.08 16 37 H 0.09 1.29 8.01 -2.39 -0.02 1.27 16 38 H 0.12 1.06 8.13 -2.39 -0.02 1.04 16 39 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 40 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.09 1.69 7.50 -2.39 -0.02 1.67 16 42 H 0.36 16.06 5.66 -92.70 -0.52 15.54 16 43 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 44 H 0.05 1.84 8.04 -2.39 -0.02 1.83 16 45 H 0.06 2.13 8.04 -2.38 -0.02 2.11 16 Total: -1.00 -82.96 376.29 1.32 -81.64 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: 0.42 Total: 20.23 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: 7.61 Total: 13.30 kcal Atomic # 7 Polarization: -124.39 SS G_CDS: -5.90 Total: -130.30 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -1.65 Total: -36.10 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 1.90 Total: 48.98 kcal Atomic # 16 Polarization: 3.30 SS G_CDS: -1.06 Total: 2.25 kcal Total: -82.96 1.32 -81.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325449534.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.648 kcal (2) G-P(sol) polarization free energy of solvation -82.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds