Wall clock time and date at job start Sat Apr 11 2020 05:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42902 * 113.99683 * 2 1 4 4 C 1.50690 * 109.47200 * 179.97438 * 3 2 1 5 5 N 1.30950 * 122.90949 * 270.04445 * 4 3 2 6 6 C 1.29423 * 117.36935 * 179.97438 * 5 4 3 7 7 S 1.70960 * 110.39037 * 359.72166 * 6 5 4 8 8 C 1.35661 * 122.90627 * 90.00243 * 4 3 2 9 9 C 1.46682 * 126.12938 * 0.03745 * 8 4 3 10 10 O 1.21691 * 119.99940 * 0.02562 * 9 8 4 11 11 N 1.34774 * 120.00158 * 179.97438 * 9 8 4 12 12 C 1.47016 * 125.64922 * 359.96378 * 11 9 8 13 13 C 1.54375 * 107.29048 * 178.94216 * 12 11 9 14 14 C 1.55158 * 102.91753 * 337.85829 * 13 12 11 15 15 H 1.09002 * 111.00437 * 277.36144 * 14 13 12 16 16 C 1.53001 * 111.00472 * 153.54740 * 14 13 12 17 17 H 1.08999 * 109.46935 * 63.17849 * 16 14 13 18 18 C 1.52999 * 109.46944 * 303.18111 * 16 14 13 19 19 N 1.46499 * 109.47193 * 183.17908 * 16 14 13 20 20 C 1.36939 * 119.99933 * 205.27576 * 19 16 14 21 21 H 1.08001 * 119.99700 * 359.72658 * 20 19 16 22 22 C 1.38810 * 120.00095 * 179.71972 * 20 19 16 23 23 N 1.31624 * 119.99740 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00044 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47173 * 60.00435 * 24 22 20 26 26 H 1.48497 * 109.47172 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47132 * 300.00314 * 24 22 20 28 28 C 1.47425 * 125.64898 * 179.97438 * 11 9 8 29 29 H 1.08992 * 109.47097 * 299.99437 * 1 2 3 30 30 H 1.08996 * 109.46942 * 59.99743 * 1 2 3 31 31 H 1.08999 * 109.46425 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46809 * 60.00119 * 3 2 1 33 33 H 1.08997 * 109.47656 * 300.00436 * 3 2 1 34 34 H 1.08001 * 124.80727 * 180.02562 * 6 5 4 35 35 H 1.08997 * 109.87912 * 298.38912 * 12 11 9 36 36 H 1.08995 * 109.88908 * 59.39884 * 12 11 9 37 37 H 1.09001 * 110.75395 * 219.49062 * 13 12 11 38 38 H 1.08993 * 110.70344 * 96.20153 * 13 12 11 39 39 H 1.08996 * 109.47098 * 60.00014 * 18 16 14 40 40 H 1.09001 * 109.46823 * 179.97438 * 18 16 14 41 41 H 1.08999 * 109.47091 * 299.99643 * 18 16 14 42 42 H 0.97001 * 119.99790 * 24.99549 * 19 16 14 43 43 H 0.96998 * 119.99409 * 179.97438 * 23 22 20 44 44 H 1.08998 * 110.36780 * 85.25460 * 28 11 9 45 45 H 1.09005 * 110.45907 * 322.98134 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1866 0.0006 5 7 4.2212 1.1299 1.1003 6 6 5.5053 1.0278 0.9759 7 16 5.9423 0.9859 -0.6764 8 6 4.2476 1.1283 -1.1380 9 6 3.7251 1.1703 -2.5080 10 8 2.5272 1.2663 -2.6996 11 7 4.5717 1.1036 -3.5545 12 6 6.0347 0.9884 -3.4671 13 6 6.5765 0.9184 -4.9109 14 6 5.3460 0.4299 -5.7199 15 1 5.2459 -0.6540 -5.6624 16 6 5.4273 0.8937 -7.1756 17 1 6.2996 0.4457 -7.6515 18 6 5.5493 2.4182 -7.2190 19 7 4.2159 0.4803 -7.8883 20 6 4.2472 0.3025 -9.2458 21 1 5.1638 0.4714 -9.7915 22 6 3.1010 -0.0948 -9.9203 23 7 1.9839 -0.3003 -9.2552 24 14 3.1434 -0.3366 -11.7721 25 1 4.1406 -1.3833 -12.1118 26 1 1.8012 -0.7583 -12.2471 27 1 3.5222 0.9400 -12.4294 28 6 4.1840 1.1344 -4.9765 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8465 -0.8899 34 1 6.2020 0.9717 1.7993 35 1 6.4454 1.8606 -2.9585 36 1 6.3035 0.0823 -2.9242 37 1 7.3944 0.2014 -4.9822 38 1 6.8952 1.9037 -5.2511 39 1 6.4506 2.7258 -6.6887 40 1 5.6077 2.7487 -8.2561 41 1 4.6770 2.8662 -6.7431 42 1 3.3928 0.3286 -7.3981 43 1 1.1828 -0.5776 -9.7266 44 1 4.0831 2.1639 -5.3200 45 1 3.2514 0.5912 -5.1291 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325449535.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:40 Heat of formation + Delta-G solvation = -6.696689 kcal Electronic energy + Delta-G solvation = -27485.846788 eV Core-core repulsion = 23631.399483 eV Total energy + Delta-G solvation = -3854.447305 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.65887 -39.76298 -37.83433 -37.53348 -35.23327 -32.65135 -31.60395 -30.66345 -29.03807 -28.47334 -27.46262 -26.29940 -24.73945 -24.46381 -23.72117 -21.87756 -21.29251 -19.00707 -18.87997 -18.67292 -17.24485 -16.91108 -16.57121 -16.27119 -16.02886 -15.54210 -15.18269 -14.93857 -14.75077 -14.39173 -14.11289 -13.93493 -13.67945 -13.36150 -13.12751 -12.94085 -12.77277 -12.49747 -12.24365 -12.12593 -11.80234 -11.63532 -11.40039 -11.14999 -10.98504 -10.85614 -10.61332 -10.39923 -10.30193 -10.23528 -10.03797 -9.82956 -9.77838 -9.63680 -9.52832 -9.31619 -8.92267 -8.57664 -6.98333 -5.76134 -3.06008 -0.03843 0.89395 1.28249 2.13797 2.84284 2.99481 3.43707 3.48144 3.49617 3.68090 4.11758 4.33744 4.54286 4.56662 4.70097 4.79166 4.84313 4.94379 5.20006 5.23237 5.32063 5.33111 5.40276 5.49579 5.55971 5.57201 5.65181 5.71075 5.73470 5.78693 5.86342 6.00083 6.11330 6.15908 6.21305 6.39568 6.49608 6.64994 6.79296 7.04502 7.06977 7.28649 7.43196 7.68910 8.02564 8.41678 9.52814 10.09352 10.43567 11.46102 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015291 B = 0.002855 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.643979 B = 9805.191940 C =11321.067285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.380 6.380 3 C 0.129 3.871 4 C 0.135 3.865 5 N -0.464 5.464 6 C 0.011 3.989 7 S 0.188 5.812 8 C -0.262 4.262 9 C 0.604 3.396 10 O -0.514 6.514 11 N -0.609 5.609 12 C 0.087 3.913 13 C -0.125 4.125 14 C -0.103 4.103 15 H 0.086 0.914 16 C 0.185 3.815 17 H 0.053 0.947 18 C -0.172 4.172 19 N -0.725 5.725 20 C -0.242 4.242 21 H 0.070 0.930 22 C -0.012 4.012 23 N -0.931 5.931 24 Si 0.906 3.094 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.111 3.889 29 H 0.039 0.961 30 H 0.048 0.952 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.093 0.907 34 H 0.204 0.796 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.040 0.960 40 H 0.054 0.946 41 H 0.050 0.950 42 H 0.384 0.616 43 H 0.256 0.744 44 H 0.082 0.918 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.922 4.328 21.490 24.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.298 6.298 3 C 0.050 3.950 4 C -0.003 4.003 5 N -0.178 5.178 6 C -0.284 4.284 7 S 0.445 5.555 8 C -0.387 4.387 9 C 0.391 3.609 10 O -0.392 6.392 11 N -0.343 5.343 12 C -0.037 4.037 13 C -0.163 4.163 14 C -0.123 4.123 15 H 0.104 0.896 16 C 0.075 3.925 17 H 0.071 0.929 18 C -0.232 4.232 19 N -0.366 5.366 20 C -0.373 4.373 21 H 0.088 0.912 22 C -0.208 4.208 23 N -0.579 5.579 24 Si 0.737 3.263 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.010 4.010 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.111 0.889 34 H 0.221 0.779 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.059 0.941 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.218 0.782 43 H 0.066 0.934 44 H 0.100 0.900 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 10.149 4.113 21.312 23.960 hybrid contribution -1.185 0.059 -0.616 1.337 sum 8.963 4.172 20.696 22.936 Atomic orbital electron populations 1.22734 0.80340 1.02874 1.00164 1.87886 1.20091 1.26351 1.95513 1.21016 0.85102 0.86328 1.02559 1.20222 0.97210 0.97559 0.85344 1.66075 1.05151 1.15306 1.31226 1.28884 0.95358 1.02086 1.02099 1.84214 1.05507 1.64386 1.01406 1.25630 0.96593 1.17293 0.99142 1.16240 0.85456 0.77574 0.81642 1.90830 1.13901 1.50137 1.84318 1.48388 1.06903 1.71915 1.07053 1.22225 0.80602 1.01362 0.99513 1.22801 0.98366 1.03353 0.91813 1.22732 0.92829 1.00631 0.96080 0.89567 1.20070 0.91853 0.92412 0.88198 0.92882 1.22630 0.99525 0.99563 1.01487 1.42434 1.07726 1.81453 1.05006 1.19167 0.95785 1.38660 0.83667 0.91215 1.24748 0.95848 1.02342 0.97876 1.69655 1.00501 1.53025 1.34678 0.86289 0.76555 0.77852 0.85580 1.21300 1.21730 1.21313 1.22538 0.99462 1.02105 0.76902 0.94226 0.93351 0.89540 0.91920 0.88871 0.77921 0.91060 0.91077 0.89718 0.89375 0.94111 0.92640 0.93100 0.78154 0.93404 0.90035 0.89593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 11.01 101.05 1.11 1.51 16 2 O -0.38 -5.65 10.69 -35.23 -0.38 -6.03 16 3 C 0.13 1.76 5.75 36.00 0.21 1.97 16 4 C 0.14 1.86 6.42 -83.89 -0.54 1.32 16 5 N -0.46 -5.69 10.50 -11.53 -0.12 -5.81 16 6 C 0.01 0.09 12.22 51.75 0.63 0.73 16 7 S 0.19 1.62 18.69 -107.50 -2.01 -0.39 16 8 C -0.26 -3.49 6.40 -37.10 -0.24 -3.72 16 9 C 0.60 9.58 7.81 -12.85 -0.10 9.48 16 10 O -0.51 -9.74 14.53 5.20 0.08 -9.67 16 11 N -0.61 -8.71 3.33 -172.05 -0.57 -9.28 16 12 C 0.09 0.92 5.20 -3.04 -0.02 0.90 16 13 C -0.13 -1.33 6.31 -24.87 -0.16 -1.49 16 14 C -0.10 -1.54 3.07 -88.48 -0.27 -1.81 16 15 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 16 C 0.19 3.35 2.84 -67.93 -0.19 3.16 16 17 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 18 C -0.17 -2.82 8.85 37.16 0.33 -2.50 16 19 N -0.72 -17.39 5.07 -53.43 -0.27 -17.66 16 20 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16 21 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 22 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 23 N -0.93 -28.01 13.06 55.49 0.72 -27.28 16 24 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 C 0.11 1.79 5.68 -2.54 -0.01 1.78 16 29 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.09 1.36 6.01 -51.93 -0.31 1.05 16 34 H 0.20 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.07 0.62 7.04 -51.93 -0.37 0.26 16 36 H 0.07 0.67 6.84 -51.93 -0.36 0.31 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.09 0.88 5.74 -51.93 -0.30 0.58 16 39 H 0.04 0.53 6.07 -51.93 -0.32 0.21 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.05 0.86 6.04 -51.93 -0.31 0.55 16 42 H 0.38 9.95 7.06 -40.82 -0.29 9.66 16 43 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.08 1.35 5.66 -51.93 -0.29 1.05 16 45 H 0.09 1.64 7.79 -51.93 -0.40 1.23 16 LS Contribution 371.25 15.07 5.59 5.59 Total: -1.00 -34.04 371.25 -7.77 -41.80 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -6.29 Total: 7.36 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: 0.51 Total: 4.21 kcal Atomic # 7 Polarization: -59.80 SS G_CDS: -0.24 Total: -60.04 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -0.30 Total: -15.69 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -2.01 Total: -0.39 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.04 -7.77 -41.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325449535.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.105 kcal (2) G-P(sol) polarization free energy of solvation -34.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds