Wall clock time and date at job start Sat Apr 11 2020 05:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42902 * 113.99683 * 2 1 4 4 C 1.50690 * 109.47200 * 179.97438 * 3 2 1 5 5 N 1.30950 * 122.90949 * 270.04445 * 4 3 2 6 6 C 1.29423 * 117.36935 * 179.97438 * 5 4 3 7 7 S 1.70960 * 110.39037 * 359.72166 * 6 5 4 8 8 C 1.35661 * 122.90627 * 90.00243 * 4 3 2 9 9 C 1.46682 * 126.12938 * 0.03745 * 8 4 3 10 10 O 1.21691 * 119.99940 * 0.02562 * 9 8 4 11 11 N 1.34774 * 120.00158 * 179.97438 * 9 8 4 12 12 C 1.47016 * 125.64922 * 359.96378 * 11 9 8 13 13 C 1.54375 * 107.29048 * 178.94216 * 12 11 9 14 14 C 1.55158 * 102.91753 * 337.85829 * 13 12 11 15 15 H 1.09002 * 111.00437 * 277.36144 * 14 13 12 16 16 C 1.53001 * 111.00472 * 153.54740 * 14 13 12 17 17 H 1.08999 * 109.46935 * 63.17849 * 16 14 13 18 18 C 1.52999 * 109.46944 * 303.18111 * 16 14 13 19 19 N 1.46499 * 109.47193 * 183.17908 * 16 14 13 20 20 C 1.36939 * 119.99933 * 205.27576 * 19 16 14 21 21 H 1.08001 * 119.99700 * 359.72658 * 20 19 16 22 22 C 1.38810 * 120.00095 * 179.71972 * 20 19 16 23 23 N 1.31624 * 119.99740 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00044 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47173 * 60.00435 * 24 22 20 26 26 H 1.48497 * 109.47172 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47132 * 300.00314 * 24 22 20 28 28 C 1.47425 * 125.64898 * 179.97438 * 11 9 8 29 29 H 1.08992 * 109.47097 * 299.99437 * 1 2 3 30 30 H 1.08996 * 109.46942 * 59.99743 * 1 2 3 31 31 H 1.08999 * 109.46425 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46809 * 60.00119 * 3 2 1 33 33 H 1.08997 * 109.47656 * 300.00436 * 3 2 1 34 34 H 1.08001 * 124.80727 * 180.02562 * 6 5 4 35 35 H 1.08997 * 109.87912 * 298.38912 * 12 11 9 36 36 H 1.08995 * 109.88908 * 59.39884 * 12 11 9 37 37 H 1.09001 * 110.75395 * 219.49062 * 13 12 11 38 38 H 1.08993 * 110.70344 * 96.20153 * 13 12 11 39 39 H 1.08996 * 109.47098 * 60.00014 * 18 16 14 40 40 H 1.09001 * 109.46823 * 179.97438 * 18 16 14 41 41 H 1.08999 * 109.47091 * 299.99643 * 18 16 14 42 42 H 0.97001 * 119.99790 * 24.99549 * 19 16 14 43 43 H 0.96998 * 119.99409 * 179.97438 * 23 22 20 44 44 H 1.08998 * 110.36780 * 85.25460 * 28 11 9 45 45 H 1.09005 * 110.45907 * 322.98134 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1866 0.0006 5 7 4.2212 1.1299 1.1003 6 6 5.5053 1.0278 0.9759 7 16 5.9423 0.9859 -0.6764 8 6 4.2476 1.1283 -1.1380 9 6 3.7251 1.1703 -2.5080 10 8 2.5272 1.2663 -2.6996 11 7 4.5717 1.1036 -3.5545 12 6 6.0347 0.9884 -3.4671 13 6 6.5765 0.9184 -4.9109 14 6 5.3460 0.4299 -5.7199 15 1 5.2459 -0.6540 -5.6624 16 6 5.4273 0.8937 -7.1756 17 1 6.2996 0.4457 -7.6515 18 6 5.5493 2.4182 -7.2190 19 7 4.2159 0.4803 -7.8883 20 6 4.2472 0.3025 -9.2458 21 1 5.1638 0.4714 -9.7915 22 6 3.1010 -0.0948 -9.9203 23 7 1.9839 -0.3003 -9.2552 24 14 3.1434 -0.3366 -11.7721 25 1 4.1406 -1.3833 -12.1118 26 1 1.8012 -0.7583 -12.2471 27 1 3.5222 0.9400 -12.4294 28 6 4.1840 1.1344 -4.9765 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8465 -0.8899 34 1 6.2020 0.9717 1.7993 35 1 6.4454 1.8606 -2.9585 36 1 6.3035 0.0823 -2.9242 37 1 7.3944 0.2014 -4.9822 38 1 6.8952 1.9037 -5.2511 39 1 6.4506 2.7258 -6.6887 40 1 5.6077 2.7487 -8.2561 41 1 4.6770 2.8662 -6.7431 42 1 3.3928 0.3286 -7.3981 43 1 1.1828 -0.5776 -9.7266 44 1 4.0831 2.1639 -5.3200 45 1 3.2514 0.5912 -5.1291 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325449535.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:39 Heat of formation + Delta-G solvation = -32.128634 kcal Electronic energy + Delta-G solvation = -27486.949600 eV Core-core repulsion = 23631.399483 eV Total energy + Delta-G solvation = -3855.550117 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.67568 -40.79555 -39.06800 -38.56847 -36.78333 -34.38689 -32.64605 -32.03769 -30.30239 -29.82054 -28.62818 -27.22263 -26.13054 -25.63003 -25.09659 -23.17137 -22.33500 -20.28598 -19.87286 -19.75026 -19.05190 -17.94019 -17.63023 -17.44056 -17.11307 -16.62271 -16.51668 -16.18525 -15.92187 -15.50523 -15.25355 -15.15968 -15.07484 -14.87970 -14.32738 -14.03620 -13.93415 -13.64044 -13.54885 -13.33552 -13.11822 -12.77515 -12.73898 -12.54223 -12.34248 -12.27446 -12.17256 -12.12817 -11.64487 -11.51205 -11.42794 -11.35053 -10.89305 -10.74522 -10.64055 -10.58128 -10.17023 -9.67188 -8.99000 -7.90954 -5.19559 -0.89190 0.09807 0.51512 1.24889 1.47717 1.50609 1.56637 1.73610 1.89469 2.57979 2.82961 3.21006 3.36634 3.42678 3.55002 3.66242 3.84896 3.91514 4.05388 4.14584 4.19687 4.32296 4.32441 4.42638 4.45278 4.48342 4.52604 4.56550 4.65180 4.73055 4.77030 4.88823 4.90689 4.93786 5.06762 5.08315 5.20733 5.31673 5.40552 5.55965 5.69571 6.06600 6.27505 6.30787 6.52776 6.87087 7.36348 8.14583 8.35044 9.32519 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015291 B = 0.002855 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.643979 B = 9805.191940 C =11321.067285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.406 6.406 3 C 0.127 3.873 4 C 0.125 3.875 5 N -0.494 5.494 6 C 0.024 3.976 7 S 0.272 5.728 8 C -0.304 4.304 9 C 0.596 3.404 10 O -0.564 6.564 11 N -0.609 5.609 12 C 0.081 3.919 13 C -0.110 4.110 14 C -0.096 4.096 15 H 0.071 0.929 16 C 0.179 3.821 17 H 0.060 0.940 18 C -0.162 4.162 19 N -0.741 5.741 20 C -0.234 4.234 21 H 0.081 0.919 22 C -0.081 4.081 23 N -0.974 5.974 24 Si 0.971 3.029 25 H -0.276 1.276 26 H -0.301 1.301 27 H -0.278 1.278 28 C 0.116 3.884 29 H 0.062 0.938 30 H 0.038 0.962 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.249 0.751 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.116 0.884 38 H 0.104 0.896 39 H 0.085 0.915 40 H 0.035 0.965 41 H 0.039 0.961 42 H 0.369 0.631 43 H 0.248 0.752 44 H 0.076 0.924 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.266 4.751 23.085 27.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.326 6.326 3 C 0.048 3.952 4 C -0.015 4.015 5 N -0.209 5.209 6 C -0.270 4.270 7 S 0.530 5.470 8 C -0.429 4.429 9 C 0.384 3.616 10 O -0.445 6.445 11 N -0.342 5.342 12 C -0.042 4.042 13 C -0.148 4.148 14 C -0.116 4.116 15 H 0.090 0.910 16 C 0.071 3.929 17 H 0.078 0.922 18 C -0.222 4.222 19 N -0.381 5.381 20 C -0.366 4.366 21 H 0.098 0.902 22 C -0.273 4.273 23 N -0.625 5.625 24 Si 0.800 3.200 25 H -0.202 1.202 26 H -0.228 1.228 27 H -0.204 1.204 28 C -0.006 4.006 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.116 0.884 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.265 0.735 35 H 0.118 0.882 36 H 0.107 0.893 37 H 0.134 0.866 38 H 0.122 0.878 39 H 0.104 0.896 40 H 0.054 0.946 41 H 0.058 0.942 42 H 0.201 0.799 43 H 0.057 0.943 44 H 0.094 0.906 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 14.611 4.554 22.917 27.558 hybrid contribution -2.408 -0.057 -1.005 2.610 sum 12.203 4.497 21.913 25.481 Atomic orbital electron populations 1.22897 0.78959 1.03890 1.00784 1.87831 1.21833 1.27266 1.95628 1.20991 0.86118 0.85876 1.02177 1.20278 0.97259 0.97731 0.86210 1.66124 1.06686 1.17405 1.30663 1.29716 0.94825 0.98630 1.03811 1.83721 1.00636 1.62485 1.00202 1.25458 1.00308 1.19720 0.97401 1.16706 0.85097 0.76798 0.82957 1.90794 1.16105 1.52295 1.85322 1.48429 1.08669 1.71322 1.05747 1.22553 0.77956 1.03528 1.00156 1.22830 0.96742 1.04807 0.90420 1.22525 0.94898 0.99576 0.94564 0.91017 1.20348 0.89512 0.93573 0.89488 0.92224 1.22479 1.01233 0.97640 1.00804 1.42725 1.09211 1.81682 1.04485 1.19623 0.95738 1.36026 0.85168 0.90152 1.25565 0.95811 1.03708 1.02191 1.69840 1.01045 1.55477 1.36112 0.85244 0.76022 0.78093 0.80611 1.20207 1.22816 1.20412 1.22282 0.98346 1.01134 0.78827 0.91934 0.94361 0.88369 0.90481 0.90911 0.73470 0.88214 0.89332 0.86591 0.87819 0.89597 0.94564 0.94247 0.79900 0.94330 0.90634 0.94062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 11.01 113.37 1.25 1.97 16 2 O -0.41 -12.69 10.69 -148.98 -1.59 -14.28 16 3 C 0.13 3.66 5.75 71.23 0.41 4.07 16 4 C 0.13 3.42 6.42 42.09 0.27 3.69 16 5 N -0.49 -11.18 10.50 -190.40 -2.00 -13.18 16 6 C 0.02 0.31 12.22 130.60 1.60 1.91 16 7 S 0.27 3.61 18.69 -56.49 -1.06 2.55 16 8 C -0.30 -7.88 6.40 23.88 0.15 -7.73 16 9 C 0.60 19.53 7.81 86.45 0.68 20.20 16 10 O -0.56 -23.25 14.53 -4.32 -0.06 -23.32 16 11 N -0.61 -17.28 3.33 -816.45 -2.72 -20.00 16 12 C 0.08 1.41 5.20 86.75 0.45 1.86 16 13 C -0.11 -1.90 6.31 31.80 0.20 -1.70 16 14 C -0.10 -2.78 3.07 -9.41 -0.03 -2.81 16 15 H 0.07 2.30 8.14 -2.39 -0.02 2.29 16 16 C 0.18 6.34 2.84 44.99 0.13 6.46 16 17 H 0.06 2.06 8.08 -2.39 -0.02 2.04 16 18 C -0.16 -5.07 8.85 71.98 0.64 -4.43 16 19 N -0.74 -36.48 5.07 -322.94 -1.64 -38.11 16 20 C -0.23 -12.73 9.93 84.03 0.83 -11.90 16 21 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 22 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 23 N -0.97 -61.10 13.06 21.65 0.28 -60.82 16 24 Si 0.97 46.41 29.55 68.60 2.03 48.44 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 26 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 27 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 28 C 0.12 3.91 5.68 86.85 0.49 4.40 16 29 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.07 2.35 6.01 -2.39 -0.01 2.34 16 34 H 0.25 0.77 8.06 -2.91 -0.02 0.75 16 35 H 0.10 1.24 7.04 -2.39 -0.02 1.22 16 36 H 0.09 1.28 6.84 -2.39 -0.02 1.26 16 37 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.10 1.51 5.74 -2.39 -0.01 1.50 16 39 H 0.09 1.90 6.07 -2.39 -0.01 1.88 16 40 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.04 1.32 6.04 -2.39 -0.01 1.30 16 42 H 0.37 20.22 7.06 -92.71 -0.65 19.56 16 43 H 0.25 15.26 8.31 -92.71 -0.77 14.48 16 44 H 0.08 2.60 5.66 -2.39 -0.01 2.59 16 45 H 0.04 1.73 7.79 -2.38 -0.02 1.71 16 Total: -1.00 -80.56 371.25 1.15 -79.41 By element: Atomic # 1 Polarization: 27.16 SS G_CDS: 0.37 Total: 27.53 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: 7.53 Total: 11.78 kcal Atomic # 7 Polarization: -126.05 SS G_CDS: -6.07 Total: -132.12 kcal Atomic # 8 Polarization: -35.94 SS G_CDS: -1.65 Total: -37.59 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Atomic # 16 Polarization: 3.61 SS G_CDS: -1.06 Total: 2.55 kcal Total: -80.56 1.15 -79.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325449535.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.280 kcal (2) G-P(sol) polarization free energy of solvation -80.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds