Wall clock time and date at job start Sat Apr 11 2020 05:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99755 * 2 1 4 4 C 1.50694 * 109.47355 * 179.97438 * 3 2 1 5 5 N 1.30946 * 122.90739 * 269.99924 * 4 3 2 6 6 C 1.29425 * 117.36823 * 179.97438 * 5 4 3 7 7 S 1.70953 * 110.38877 * 359.72220 * 6 5 4 8 8 C 1.35667 * 122.90729 * 89.99409 * 4 3 2 9 9 C 1.46682 * 126.12626 * 0.02562 * 8 4 3 10 10 O 1.21691 * 120.00360 * 0.02562 * 9 8 4 11 11 N 1.34784 * 119.99910 * 179.97438 * 9 8 4 12 12 C 1.47018 * 125.64722 * 0.02562 * 11 9 8 13 13 C 1.54320 * 107.27210 * 181.02498 * 12 11 9 14 14 C 1.55159 * 102.94349 * 22.19183 * 13 12 11 15 15 H 1.09004 * 111.00410 * 82.57393 * 14 13 12 16 16 C 1.52998 * 111.00608 * 206.38650 * 14 13 12 17 17 H 1.09008 * 109.46727 * 60.00215 * 16 14 13 18 18 C 1.53002 * 109.47081 * 300.00157 * 16 14 13 19 19 N 1.46496 * 109.46962 * 179.97438 * 16 14 13 20 20 C 1.36940 * 119.99847 * 204.99976 * 19 16 14 21 21 H 1.07998 * 120.00134 * 0.02562 * 20 19 16 22 22 C 1.38815 * 120.00200 * 179.97438 * 20 19 16 23 23 N 1.31623 * 119.99706 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00235 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47045 * 60.00299 * 24 22 20 26 26 H 1.48496 * 109.47109 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47066 * 300.00032 * 24 22 20 28 28 C 1.47421 * 125.64843 * 179.72081 * 11 9 8 29 29 H 1.09000 * 109.46612 * 179.97438 * 1 2 3 30 30 H 1.08988 * 109.47618 * 300.00316 * 1 2 3 31 31 H 1.09005 * 109.46643 * 60.00902 * 1 2 3 32 32 H 1.08998 * 109.47249 * 59.99483 * 3 2 1 33 33 H 1.09009 * 109.46774 * 299.99663 * 3 2 1 34 34 H 1.07994 * 124.80342 * 179.97438 * 6 5 4 35 35 H 1.09010 * 109.88204 * 300.44210 * 12 11 9 36 36 H 1.09004 * 109.88434 * 61.44920 * 12 11 9 37 37 H 1.08996 * 110.72172 * 140.55457 * 13 12 11 38 38 H 1.08998 * 110.72014 * 263.65340 * 13 12 11 39 39 H 1.09002 * 109.46417 * 179.97438 * 18 16 14 40 40 H 1.08998 * 109.46919 * 299.99906 * 18 16 14 41 41 H 1.08994 * 109.46771 * 60.00239 * 18 16 14 42 42 H 0.97001 * 120.00370 * 24.99948 * 19 16 14 43 43 H 0.96999 * 120.00043 * 179.97438 * 23 22 20 44 44 H 1.09005 * 110.36058 * 274.74476 * 28 11 9 45 45 H 1.08997 * 110.36930 * 37.06604 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1866 0.0006 5 7 4.2212 1.1307 1.1003 6 6 5.5054 1.0286 0.9759 7 16 5.9421 0.9854 -0.6763 8 6 4.2476 1.1282 -1.1380 9 6 3.7250 1.1697 -2.5080 10 8 2.5271 1.2654 -2.6996 11 7 4.5717 1.1029 -3.5546 12 6 6.0346 0.9867 -3.4671 13 6 6.5801 0.9704 -4.9106 14 6 5.4424 1.6474 -5.7197 15 1 5.5143 2.7335 -5.6613 16 6 5.4505 1.1778 -7.1758 17 1 5.3085 0.0975 -7.2099 18 6 6.7911 1.5367 -7.8199 19 7 4.3650 1.8358 -7.9071 20 6 3.8366 1.2464 -9.0246 21 1 4.2198 0.2964 -9.3665 22 6 2.8077 1.8696 -9.7173 23 7 2.3403 3.0273 -9.3003 24 14 2.0864 1.0653 -11.2412 25 1 1.5247 -0.2615 -10.8818 26 1 1.0095 1.9263 -11.7926 27 1 3.1519 0.8921 -12.2609 28 6 4.1836 1.1279 -4.9766 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8898 31 1 -0.3633 0.5137 -0.8901 32 1 1.6885 1.8464 0.8899 33 1 1.6885 1.8464 -0.8901 34 1 6.2020 0.9739 1.7993 35 1 6.4427 1.8406 -2.9262 36 1 6.3032 0.0619 -2.9564 37 1 7.5009 1.5493 -4.9814 38 1 6.7423 -0.0526 -5.2500 39 1 6.7970 1.2016 -8.8572 40 1 6.9330 2.6168 -7.7857 41 1 7.5984 1.0467 -7.2757 42 1 4.0205 2.6889 -7.5999 43 1 1.6216 3.4629 -9.7846 44 1 3.9260 0.1250 -5.3171 45 1 3.3458 1.8082 -5.1293 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325449536.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:42 Heat of formation + Delta-G solvation = -12.315938 kcal Electronic energy + Delta-G solvation = -27384.500308 eV Core-core repulsion = 23529.809334 eV Total energy + Delta-G solvation = -3854.690974 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.63837 -39.69021 -37.74990 -37.52448 -35.26890 -32.61193 -31.62393 -30.65147 -29.09104 -28.45694 -27.70425 -26.29124 -24.73385 -24.07991 -23.60877 -21.79959 -20.94186 -19.72065 -18.96567 -18.62749 -17.21758 -16.77582 -16.65986 -16.30032 -15.87532 -15.55114 -15.16071 -15.03808 -14.60226 -14.40453 -14.07306 -13.83653 -13.75373 -13.19648 -13.08683 -12.81868 -12.73378 -12.47844 -12.18826 -12.11174 -11.85321 -11.62266 -11.41848 -11.37639 -10.90779 -10.84219 -10.66707 -10.58077 -10.25935 -10.22267 -10.01940 -9.84288 -9.77991 -9.64115 -9.52824 -9.31931 -8.91442 -8.60479 -6.97443 -5.76090 -3.05411 -0.03275 0.89791 1.28683 2.14333 2.86110 3.00445 3.44587 3.49277 3.50150 3.67905 4.11942 4.34480 4.55022 4.57715 4.70613 4.79482 4.84619 4.93873 5.19744 5.20706 5.32050 5.34035 5.40196 5.49642 5.52560 5.58167 5.63322 5.78998 5.81668 5.83842 5.87402 5.96262 6.12353 6.21619 6.28066 6.36014 6.48720 6.59200 6.82098 7.03620 7.04013 7.29349 7.44615 7.69619 8.04049 8.41855 9.53270 10.09458 10.43799 11.46288 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013679 B = 0.002969 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.510247 B = 9429.222587 C =11144.065677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.380 6.380 3 C 0.129 3.871 4 C 0.135 3.865 5 N -0.464 5.464 6 C 0.011 3.989 7 S 0.188 5.812 8 C -0.262 4.262 9 C 0.604 3.396 10 O -0.514 6.514 11 N -0.611 5.611 12 C 0.086 3.914 13 C -0.118 4.118 14 C -0.101 4.101 15 H 0.084 0.916 16 C 0.185 3.815 17 H 0.050 0.950 18 C -0.164 4.164 19 N -0.724 5.724 20 C -0.240 4.240 21 H 0.069 0.931 22 C -0.011 4.011 23 N -0.931 5.931 24 Si 0.905 3.095 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.287 1.287 28 C 0.122 3.878 29 H 0.086 0.914 30 H 0.040 0.960 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.204 0.796 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.054 0.946 40 H 0.046 0.954 41 H 0.038 0.962 42 H 0.384 0.616 43 H 0.256 0.744 44 H 0.075 0.925 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.899 -3.789 21.246 23.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.299 6.299 3 C 0.050 3.950 4 C -0.003 4.003 5 N -0.178 5.178 6 C -0.284 4.284 7 S 0.445 5.555 8 C -0.386 4.386 9 C 0.391 3.609 10 O -0.391 6.391 11 N -0.345 5.345 12 C -0.038 4.038 13 C -0.157 4.157 14 C -0.121 4.121 15 H 0.102 0.898 16 C 0.075 3.925 17 H 0.068 0.932 18 C -0.224 4.224 19 N -0.365 5.365 20 C -0.371 4.371 21 H 0.087 0.913 22 C -0.207 4.207 23 N -0.579 5.579 24 Si 0.736 3.264 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 C 0.001 3.999 29 H 0.104 0.896 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.112 0.888 34 H 0.221 0.779 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.057 0.943 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.093 0.907 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.032 -4.078 21.111 23.726 hybrid contribution -1.364 0.180 -0.545 1.480 sum 8.668 -3.899 20.566 22.656 Atomic orbital electron populations 1.22731 0.80369 1.02802 1.00220 1.87874 1.20071 1.26429 1.95527 1.21026 0.85103 0.86265 1.02636 1.20217 0.97200 0.97578 0.85346 1.66074 1.05153 1.15302 1.31230 1.28879 0.95350 1.02122 1.02095 1.84202 1.05525 1.64395 1.01406 1.25640 0.96579 1.17253 0.99165 1.16238 0.85481 0.77559 0.81631 1.90832 1.13920 1.50070 1.84307 1.48423 1.06889 1.71938 1.07218 1.22234 0.80683 1.01359 0.99521 1.22646 0.98819 1.02458 0.91749 1.22739 0.92718 1.00579 0.96111 0.89812 1.20145 0.88995 0.96224 0.87180 0.93242 1.22449 0.97948 1.00823 1.01226 1.42410 1.39176 1.24551 1.30407 1.19151 1.13121 1.02743 1.02097 0.91267 1.24727 0.99337 0.97167 0.99513 1.69645 1.30121 1.16661 1.41519 0.86300 0.78590 0.78367 0.83108 1.21257 1.21743 1.21345 1.22389 0.98599 1.02501 0.76418 0.89596 0.94188 0.93356 0.91883 0.88814 0.77925 0.91065 0.91079 0.89668 0.89984 0.92725 0.93480 0.94338 0.78253 0.93455 0.90675 0.89360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 11.01 101.05 1.11 1.50 16 2 O -0.38 -5.61 10.69 -35.23 -0.38 -5.99 16 3 C 0.13 1.77 5.75 36.00 0.21 1.98 16 4 C 0.14 1.87 6.42 -83.89 -0.54 1.33 16 5 N -0.46 -5.72 10.50 -11.54 -0.12 -5.84 16 6 C 0.01 0.09 12.22 51.75 0.63 0.72 16 7 S 0.19 1.63 18.69 -107.50 -2.01 -0.38 16 8 C -0.26 -3.51 6.40 -37.09 -0.24 -3.74 16 9 C 0.60 9.67 7.81 -12.85 -0.10 9.57 16 10 O -0.51 -9.86 14.52 5.20 0.08 -9.79 16 11 N -0.61 -8.82 3.32 -171.92 -0.57 -9.40 16 12 C 0.09 0.90 5.19 -3.07 -0.02 0.89 16 13 C -0.12 -1.25 5.28 -24.90 -0.13 -1.38 16 14 C -0.10 -1.49 2.67 -88.35 -0.24 -1.73 16 15 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 16 C 0.18 3.32 2.43 -67.93 -0.17 3.16 16 17 H 0.05 0.91 8.01 -51.92 -0.42 0.50 16 18 C -0.16 -2.66 9.27 37.16 0.34 -2.32 16 19 N -0.72 -17.19 4.97 -53.42 -0.27 -17.45 16 20 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 21 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 22 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 23 N -0.93 -27.85 13.06 55.49 0.72 -27.13 16 24 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 C 0.12 2.01 6.24 -2.41 -0.02 1.99 16 29 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.04 0.36 8.14 -51.94 -0.42 -0.06 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.09 1.39 6.01 -51.92 -0.31 1.08 16 34 H 0.20 0.91 8.06 -52.49 -0.42 0.48 16 35 H 0.07 0.65 6.88 -51.92 -0.36 0.29 16 36 H 0.07 0.64 7.00 -51.93 -0.36 0.28 16 37 H 0.08 0.74 8.11 -51.93 -0.42 0.32 16 38 H 0.08 0.82 8.04 -51.93 -0.42 0.40 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.04 0.49 7.27 -51.93 -0.38 0.11 16 42 H 0.38 9.82 7.80 -40.82 -0.32 9.50 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.07 1.31 7.99 -51.93 -0.41 0.89 16 45 H 0.09 1.71 8.03 -51.93 -0.42 1.29 16 LS Contribution 379.09 15.07 5.71 5.71 Total: -1.00 -33.79 379.09 -7.99 -41.78 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -6.74 Total: 6.29 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: 0.61 Total: 4.96 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: -0.23 Total: -59.82 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -0.30 Total: -15.78 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -2.01 Total: -0.38 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.79 -7.99 -41.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325449536.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.460 kcal (2) G-P(sol) polarization free energy of solvation -33.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds