Wall clock time and date at job start Sat Apr 11 2020 05:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99755 * 2 1 4 4 C 1.50694 * 109.47355 * 179.97438 * 3 2 1 5 5 N 1.30946 * 122.90739 * 269.99924 * 4 3 2 6 6 C 1.29425 * 117.36823 * 179.97438 * 5 4 3 7 7 S 1.70953 * 110.38877 * 359.72220 * 6 5 4 8 8 C 1.35667 * 122.90729 * 89.99409 * 4 3 2 9 9 C 1.46682 * 126.12626 * 0.02562 * 8 4 3 10 10 O 1.21691 * 120.00360 * 0.02562 * 9 8 4 11 11 N 1.34784 * 119.99910 * 179.97438 * 9 8 4 12 12 C 1.47018 * 125.64722 * 0.02562 * 11 9 8 13 13 C 1.54320 * 107.27210 * 181.02498 * 12 11 9 14 14 C 1.55159 * 102.94349 * 22.19183 * 13 12 11 15 15 H 1.09004 * 111.00410 * 82.57393 * 14 13 12 16 16 C 1.52998 * 111.00608 * 206.38650 * 14 13 12 17 17 H 1.09008 * 109.46727 * 60.00215 * 16 14 13 18 18 C 1.53002 * 109.47081 * 300.00157 * 16 14 13 19 19 N 1.46496 * 109.46962 * 179.97438 * 16 14 13 20 20 C 1.36940 * 119.99847 * 204.99976 * 19 16 14 21 21 H 1.07998 * 120.00134 * 0.02562 * 20 19 16 22 22 C 1.38815 * 120.00200 * 179.97438 * 20 19 16 23 23 N 1.31623 * 119.99706 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00235 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47045 * 60.00299 * 24 22 20 26 26 H 1.48496 * 109.47109 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47066 * 300.00032 * 24 22 20 28 28 C 1.47421 * 125.64843 * 179.72081 * 11 9 8 29 29 H 1.09000 * 109.46612 * 179.97438 * 1 2 3 30 30 H 1.08988 * 109.47618 * 300.00316 * 1 2 3 31 31 H 1.09005 * 109.46643 * 60.00902 * 1 2 3 32 32 H 1.08998 * 109.47249 * 59.99483 * 3 2 1 33 33 H 1.09009 * 109.46774 * 299.99663 * 3 2 1 34 34 H 1.07994 * 124.80342 * 179.97438 * 6 5 4 35 35 H 1.09010 * 109.88204 * 300.44210 * 12 11 9 36 36 H 1.09004 * 109.88434 * 61.44920 * 12 11 9 37 37 H 1.08996 * 110.72172 * 140.55457 * 13 12 11 38 38 H 1.08998 * 110.72014 * 263.65340 * 13 12 11 39 39 H 1.09002 * 109.46417 * 179.97438 * 18 16 14 40 40 H 1.08998 * 109.46919 * 299.99906 * 18 16 14 41 41 H 1.08994 * 109.46771 * 60.00239 * 18 16 14 42 42 H 0.97001 * 120.00370 * 24.99948 * 19 16 14 43 43 H 0.96999 * 120.00043 * 179.97438 * 23 22 20 44 44 H 1.09005 * 110.36058 * 274.74476 * 28 11 9 45 45 H 1.08997 * 110.36930 * 37.06604 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1866 0.0006 5 7 4.2212 1.1307 1.1003 6 6 5.5054 1.0286 0.9759 7 16 5.9421 0.9854 -0.6763 8 6 4.2476 1.1282 -1.1380 9 6 3.7250 1.1697 -2.5080 10 8 2.5271 1.2654 -2.6996 11 7 4.5717 1.1029 -3.5546 12 6 6.0346 0.9867 -3.4671 13 6 6.5801 0.9704 -4.9106 14 6 5.4424 1.6474 -5.7197 15 1 5.5143 2.7335 -5.6613 16 6 5.4505 1.1778 -7.1758 17 1 5.3085 0.0975 -7.2099 18 6 6.7911 1.5367 -7.8199 19 7 4.3650 1.8358 -7.9071 20 6 3.8366 1.2464 -9.0246 21 1 4.2198 0.2964 -9.3665 22 6 2.8077 1.8696 -9.7173 23 7 2.3403 3.0273 -9.3003 24 14 2.0864 1.0653 -11.2412 25 1 1.5247 -0.2615 -10.8818 26 1 1.0095 1.9263 -11.7926 27 1 3.1519 0.8921 -12.2609 28 6 4.1836 1.1279 -4.9766 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8898 31 1 -0.3633 0.5137 -0.8901 32 1 1.6885 1.8464 0.8899 33 1 1.6885 1.8464 -0.8901 34 1 6.2020 0.9739 1.7993 35 1 6.4427 1.8406 -2.9262 36 1 6.3032 0.0619 -2.9564 37 1 7.5009 1.5493 -4.9814 38 1 6.7423 -0.0526 -5.2500 39 1 6.7970 1.2016 -8.8572 40 1 6.9330 2.6168 -7.7857 41 1 7.5984 1.0467 -7.2757 42 1 4.0205 2.6889 -7.5999 43 1 1.6216 3.4629 -9.7846 44 1 3.9260 0.1250 -5.3171 45 1 3.3458 1.8082 -5.1293 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325449536.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:41 Heat of formation + Delta-G solvation = -37.366475 kcal Electronic energy + Delta-G solvation = -27385.586581 eV Core-core repulsion = 23529.809334 eV Total energy + Delta-G solvation = -3855.777247 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.65495 -40.73228 -38.97706 -38.56904 -36.83188 -34.35314 -32.67883 -32.02679 -30.19448 -30.02253 -28.80510 -27.20003 -25.93731 -25.62133 -24.77033 -23.05114 -22.05926 -21.09779 -19.87489 -19.68138 -19.03592 -17.88220 -17.68736 -17.47826 -17.00204 -16.60500 -16.54317 -16.09546 -15.87125 -15.48066 -15.38379 -15.20574 -14.97891 -14.57558 -14.21120 -14.06214 -13.98020 -13.65665 -13.42531 -13.32078 -13.13503 -12.90238 -12.72286 -12.53066 -12.39247 -12.33124 -12.25122 -12.00290 -11.80675 -11.54747 -11.40366 -11.34556 -10.91990 -10.74548 -10.64653 -10.58736 -10.18856 -9.69877 -8.97175 -7.91299 -5.18507 -0.89394 0.09509 0.51373 1.24700 1.46800 1.49496 1.55078 1.73996 1.88785 2.57649 2.81933 3.21234 3.36205 3.43460 3.56515 3.68351 3.83980 3.86733 4.05210 4.16796 4.18441 4.32048 4.34841 4.42424 4.48344 4.52309 4.55691 4.60780 4.65593 4.76413 4.82799 4.87179 4.89978 4.93009 5.07048 5.12970 5.18505 5.30580 5.43117 5.55344 5.67991 6.05561 6.27606 6.31122 6.52565 6.86923 7.37019 8.15377 8.35738 9.32135 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013679 B = 0.002969 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.510247 B = 9429.222587 C =11144.065677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.405 6.405 3 C 0.127 3.873 4 C 0.126 3.874 5 N -0.495 5.495 6 C 0.024 3.976 7 S 0.273 5.727 8 C -0.305 4.305 9 C 0.596 3.404 10 O -0.565 6.565 11 N -0.611 5.611 12 C 0.080 3.920 13 C -0.105 4.105 14 C -0.092 4.092 15 H 0.078 0.922 16 C 0.179 3.821 17 H 0.046 0.954 18 C -0.153 4.153 19 N -0.738 5.738 20 C -0.232 4.232 21 H 0.076 0.924 22 C -0.078 4.078 23 N -0.971 5.971 24 Si 0.966 3.034 25 H -0.281 1.281 26 H -0.300 1.300 27 H -0.276 1.276 28 C 0.126 3.874 29 H 0.100 0.900 30 H 0.061 0.939 31 H 0.037 0.963 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.250 0.750 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.120 0.880 38 H 0.095 0.905 39 H 0.032 0.968 40 H 0.042 0.958 41 H 0.084 0.916 42 H 0.370 0.630 43 H 0.248 0.752 44 H 0.059 0.941 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.911 -5.101 23.069 27.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.324 6.324 3 C 0.048 3.952 4 C -0.015 4.015 5 N -0.209 5.209 6 C -0.270 4.270 7 S 0.531 5.469 8 C -0.429 4.429 9 C 0.384 3.616 10 O -0.446 6.446 11 N -0.343 5.343 12 C -0.043 4.043 13 C -0.143 4.143 14 C -0.112 4.112 15 H 0.097 0.903 16 C 0.071 3.929 17 H 0.065 0.935 18 C -0.213 4.213 19 N -0.378 5.378 20 C -0.364 4.364 21 H 0.094 0.906 22 C -0.270 4.270 23 N -0.622 5.622 24 Si 0.796 3.204 25 H -0.207 1.207 26 H -0.226 1.226 27 H -0.202 1.202 28 C 0.004 3.996 29 H 0.118 0.882 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.266 0.734 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.138 0.862 38 H 0.114 0.886 39 H 0.051 0.949 40 H 0.061 0.939 41 H 0.103 0.897 42 H 0.201 0.799 43 H 0.057 0.943 44 H 0.078 0.922 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 14.148 -5.435 22.946 27.500 hybrid contribution -2.499 0.533 -0.998 2.743 sum 11.649 -4.902 21.948 25.327 Atomic orbital electron populations 1.22902 0.78966 1.03946 1.00736 1.87822 1.21816 1.27143 1.95622 1.20982 0.86169 0.85915 1.02100 1.20266 0.97230 0.97732 0.86223 1.66122 1.06699 1.17423 1.30641 1.29719 0.94807 0.98619 1.03827 1.83700 1.00564 1.62456 1.00170 1.25456 1.00360 1.19751 0.97367 1.16722 0.85115 0.76742 0.82986 1.90794 1.16190 1.52278 1.85343 1.48460 1.08732 1.71336 1.05809 1.22566 0.77884 1.03546 1.00264 1.22700 0.98060 1.03269 0.90312 1.22546 0.93825 1.00532 0.94299 0.90314 1.20420 0.88286 0.95579 0.88659 0.93547 1.22278 0.97762 1.00965 1.00260 1.42658 1.40694 1.24238 1.30237 1.19561 1.12108 1.02464 1.02246 0.90565 1.25495 1.00668 0.98074 1.02792 1.69811 1.31020 1.18394 1.42996 0.85308 0.77708 0.77285 0.80083 1.20743 1.22649 1.20210 1.22119 0.98440 1.00488 0.78585 0.88165 0.92029 0.94453 0.90535 0.91080 0.73438 0.88828 0.88697 0.86195 0.88603 0.94878 0.93871 0.89724 0.79858 0.94333 0.92227 0.93810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 11.01 113.37 1.25 1.95 16 2 O -0.40 -12.47 10.69 -148.98 -1.59 -14.07 16 3 C 0.13 3.70 5.75 71.23 0.41 4.10 16 4 C 0.13 3.45 6.42 42.09 0.27 3.72 16 5 N -0.49 -11.23 10.50 -190.41 -2.00 -13.23 16 6 C 0.02 0.32 12.22 130.60 1.60 1.91 16 7 S 0.27 3.64 18.69 -56.49 -1.06 2.58 16 8 C -0.30 -7.96 6.40 23.88 0.15 -7.81 16 9 C 0.60 19.78 7.81 86.45 0.68 20.45 16 10 O -0.56 -23.66 14.52 -4.32 -0.06 -23.72 16 11 N -0.61 -17.58 3.32 -816.04 -2.71 -20.29 16 12 C 0.08 1.40 5.19 86.73 0.45 1.85 16 13 C -0.11 -1.79 5.28 31.78 0.17 -1.62 16 14 C -0.09 -2.62 2.67 -9.32 -0.02 -2.64 16 15 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 16 C 0.18 6.30 2.43 44.99 0.11 6.41 16 17 H 0.05 1.67 8.01 -2.38 -0.02 1.65 16 18 C -0.15 -4.59 9.27 71.98 0.67 -3.93 16 19 N -0.74 -35.96 4.97 -322.94 -1.61 -37.57 16 20 C -0.23 -12.68 9.93 84.03 0.83 -11.84 16 21 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 22 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 23 N -0.97 -60.44 13.06 21.65 0.28 -60.15 16 24 Si 0.97 46.79 29.55 68.60 2.03 48.81 16 25 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 26 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 27 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 28 C 0.13 4.34 6.24 86.93 0.54 4.88 16 29 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.08 1.89 8.14 -2.39 -0.02 1.88 16 33 H 0.07 2.35 6.01 -2.38 -0.01 2.34 16 34 H 0.25 0.76 8.06 -2.91 -0.02 0.74 16 35 H 0.09 1.26 6.88 -2.38 -0.02 1.24 16 36 H 0.10 1.27 7.00 -2.38 -0.02 1.25 16 37 H 0.12 1.32 8.11 -2.39 -0.02 1.30 16 38 H 0.10 1.44 8.04 -2.39 -0.02 1.42 16 39 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.08 1.77 7.27 -2.39 -0.02 1.75 16 42 H 0.37 19.83 7.80 -92.71 -0.72 19.11 16 43 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 44 H 0.06 2.19 7.99 -2.38 -0.02 2.17 16 45 H 0.04 1.87 8.03 -2.39 -0.02 1.85 16 Total: -1.00 -80.31 379.09 1.13 -79.18 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: 0.28 Total: 25.08 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: 7.57 Total: 13.37 kcal Atomic # 7 Polarization: -125.21 SS G_CDS: -6.04 Total: -131.24 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -1.65 Total: -37.78 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.81 kcal Atomic # 16 Polarization: 3.64 SS G_CDS: -1.06 Total: 2.58 kcal Total: -80.31 1.13 -79.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325449536.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.815 kcal (2) G-P(sol) polarization free energy of solvation -80.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds