Wall clock time and date at job start Sat Apr 11 2020 05:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47166 * 2 1 4 4 C 1.52992 * 109.47448 * 120.00767 * 2 1 3 5 5 C 1.52997 * 109.47482 * 184.99813 * 4 2 1 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00597 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99622 * 179.97438 * 7 6 5 10 10 H 1.09002 * 109.47060 * 60.00278 * 9 7 6 11 11 C 1.53002 * 109.47419 * 300.00197 * 9 7 6 12 12 N 1.46504 * 109.47396 * 180.02562 * 9 7 6 13 13 C 1.34773 * 120.00556 * 205.00034 * 12 9 7 14 14 O 1.21706 * 119.99652 * 0.02562 * 13 12 9 15 15 C 1.46582 * 120.00274 * 179.97438 * 13 12 9 16 16 C 1.36646 * 125.45531 * 180.02562 * 15 13 12 17 17 C 1.37479 * 113.29256 * 180.02562 * 16 15 13 18 18 C 1.33819 * 115.10096 * 359.97438 * 17 16 15 19 19 S 1.70621 * 110.95447 * 359.73026 * 18 17 16 20 20 N 1.46502 * 109.46969 * 240.00729 * 2 1 3 21 21 C 1.36941 * 120.00103 * 84.99785 * 20 2 1 22 22 H 1.08000 * 119.99734 * 0.02562 * 21 20 2 23 23 C 1.38812 * 119.99814 * 180.02562 * 21 20 2 24 24 N 1.31613 * 120.00446 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 119.99795 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47005 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47173 * 119.99511 * 25 23 21 28 28 H 1.48503 * 109.46673 * 239.99595 * 25 23 21 29 29 H 1.09004 * 109.47224 * 59.99257 * 1 2 3 30 30 H 1.09000 * 109.47346 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46964 * 299.99762 * 1 2 3 32 32 H 1.09002 * 109.47103 * 64.99566 * 4 2 1 33 33 H 1.08998 * 109.46862 * 305.00378 * 4 2 1 34 34 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 35 35 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 36 36 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 37 37 H 1.08996 * 109.47407 * 179.97438 * 11 9 7 38 38 H 1.08992 * 109.47063 * 300.00072 * 11 9 7 39 39 H 1.09004 * 109.46733 * 60.00358 * 11 9 7 40 40 H 0.97007 * 119.99492 * 25.00055 * 12 9 7 41 41 H 1.07998 * 123.35791 * 359.97438 * 16 15 13 42 42 H 1.07997 * 122.44834 * 180.02562 * 17 16 15 43 43 H 1.07996 * 124.52116 * 180.02562 * 18 17 16 44 44 H 0.97003 * 120.00235 * 265.00555 * 20 2 1 45 45 H 0.96996 * 120.00501 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5648 -0.6135 1.3135 6 7 4.0531 -1.3037 2.5099 7 6 5.3740 -1.3399 2.7750 8 8 6.1584 -0.8006 2.0235 9 6 5.8763 -2.0494 4.0060 10 1 5.5874 -3.0996 3.9633 11 6 5.2668 -1.4031 5.2517 12 7 7.3364 -1.9462 4.0677 13 6 8.0497 -2.8719 4.7390 14 8 7.4809 -3.7939 5.2936 15 6 9.5106 -2.7689 4.8002 16 6 10.3404 -3.6414 5.4463 17 6 11.6694 -3.3051 5.3433 18 6 11.9214 -2.1965 4.6376 19 16 10.4765 -1.5071 4.0475 20 7 2.0183 -0.6905 -1.1963 21 6 2.1490 -0.0072 -2.3758 22 1 1.8925 1.0408 -2.4241 23 6 2.6112 -0.6616 -3.5094 24 7 2.9242 -1.9386 -3.4505 25 14 2.7902 0.2706 -5.1183 26 1 2.3762 1.6830 -4.9207 27 1 4.2070 0.2269 -5.5607 28 1 1.9290 -0.3572 -6.1525 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.7516 -1.7716 1.2053 33 1 1.6054 -0.2620 2.1368 34 1 3.8532 0.4368 1.3572 35 1 3.9994 -1.0729 0.4257 36 1 3.4258 -1.7353 3.1108 37 1 5.6297 -1.9165 6.1420 38 1 5.5556 -0.3530 5.2944 39 1 4.1804 -1.4796 5.2061 40 1 7.7897 -1.2115 3.6253 41 1 9.9873 -4.5084 5.9848 42 1 12.4528 -3.8932 5.7981 43 1 12.9081 -1.7946 4.4607 44 1 2.2489 -1.6317 -1.1529 45 1 3.2475 -2.3958 -4.2425 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328388167.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:44 Heat of formation + Delta-G solvation = -36.486298 kcal Electronic energy + Delta-G solvation = -26130.512527 eV Core-core repulsion = 22274.773448 eV Total energy + Delta-G solvation = -3855.739079 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.54832 -39.35964 -37.78902 -36.67284 -35.16400 -34.51964 -32.39008 -31.59377 -29.81955 -29.09224 -28.03658 -25.68761 -24.63821 -23.74114 -22.61070 -21.49269 -20.55886 -19.99880 -19.48494 -19.07003 -17.31530 -17.06623 -16.63649 -16.04040 -15.87581 -15.52755 -15.22962 -14.85612 -14.80797 -14.13617 -13.98928 -13.68765 -13.51241 -13.42552 -13.12179 -13.10110 -12.77477 -12.60733 -12.54632 -12.49945 -12.06463 -11.89406 -11.56675 -11.30510 -11.11685 -10.94757 -10.77484 -10.65263 -10.39500 -10.30194 -10.02983 -9.83422 -9.64978 -9.48622 -9.20595 -8.97601 -8.95350 -8.87958 -6.95627 -5.75358 -3.04194 0.15666 1.11978 1.53309 2.04372 2.55355 2.58899 2.92150 3.30007 3.44686 3.50220 3.52484 4.40051 4.56140 4.60607 4.64586 4.76969 4.88308 4.94304 5.10840 5.21712 5.29263 5.36695 5.45959 5.54936 5.58600 5.65166 5.79940 5.81677 5.85001 5.94731 6.00268 6.04173 6.14944 6.30669 6.36780 6.41836 6.59866 6.67246 6.84723 7.04766 7.14155 7.47048 7.72232 7.83709 8.16135 8.42866 9.54380 10.10833 10.45218 11.47290 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013714 B = 0.002172 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.145072 B =12887.504833 C =14322.684344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.049 0.951 4 C -0.133 4.133 5 C 0.121 3.879 6 N -0.720 5.720 7 C 0.506 3.494 8 O -0.533 6.533 9 C 0.125 3.875 10 H 0.118 0.882 11 C -0.159 4.159 12 N -0.708 5.708 13 C 0.596 3.404 14 O -0.530 6.530 15 C -0.269 4.269 16 C -0.054 4.054 17 C -0.152 4.152 18 C -0.231 4.231 19 S 0.215 5.785 20 N -0.724 5.724 21 C -0.237 4.237 22 H 0.071 0.929 23 C -0.013 4.013 24 N -0.932 5.932 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.035 0.965 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.399 0.601 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.408 0.592 41 H 0.154 0.846 42 H 0.146 0.854 43 H 0.170 0.830 44 H 0.383 0.617 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.433 -0.028 22.859 26.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.064 3.936 3 H 0.067 0.933 4 C -0.171 4.171 5 C -0.001 4.001 6 N -0.371 5.371 7 C 0.290 3.710 8 O -0.409 6.409 9 C 0.017 3.983 10 H 0.135 0.865 11 C -0.217 4.217 12 N -0.361 5.361 13 C 0.383 3.617 14 O -0.409 6.409 15 C -0.390 4.390 16 C -0.088 4.088 17 C -0.183 4.183 18 C -0.369 4.369 19 S 0.482 5.518 20 N -0.366 5.366 21 C -0.369 4.369 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.580 5.580 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.220 1.220 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.105 0.895 36 H 0.233 0.767 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.246 0.754 41 H 0.172 0.828 42 H 0.164 0.836 43 H 0.187 0.813 44 H 0.217 0.783 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 12.265 1.154 21.643 24.903 hybrid contribution 0.554 -1.034 -0.107 1.178 sum 12.820 0.120 21.535 25.063 Atomic orbital electron populations 1.22426 0.99102 1.00858 0.99976 1.20150 0.91910 0.95563 0.86002 0.93284 1.22066 0.93721 1.01929 0.99432 1.21518 0.94575 0.97176 0.86838 1.46034 1.06722 1.56691 1.27640 1.20424 0.83143 0.80783 0.86618 1.90740 1.55149 1.45717 1.49291 1.20823 0.80952 1.02482 0.94074 0.86468 1.22138 1.01255 1.01514 0.96836 1.45599 1.06468 1.29298 1.54782 1.16888 0.84812 0.81615 0.78409 1.90831 1.70972 1.33085 1.45986 1.24578 0.97153 1.04700 1.12550 1.20808 0.91743 0.98976 0.97255 1.20058 0.96860 0.98356 1.03060 1.25406 1.04299 1.01961 1.05214 1.83329 0.95095 1.25187 1.48197 1.42465 1.78088 1.10653 1.05365 1.19261 1.36453 0.93845 0.87310 0.91154 1.24729 1.02176 0.95954 0.98059 1.69657 1.50941 1.08673 1.28770 0.86153 0.77318 0.78799 0.84140 1.20585 1.21885 1.21966 0.92717 0.93504 0.94565 0.91506 0.91835 0.91615 0.89529 0.76731 0.90724 0.91614 0.90639 0.75442 0.82813 0.83646 0.81284 0.78296 0.93590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 9.49 37.16 0.35 -2.43 16 2 C 0.17 3.23 2.89 -67.93 -0.20 3.04 16 3 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 4 C -0.13 -1.92 4.87 -26.74 -0.13 -2.05 16 5 C 0.12 1.90 5.56 -4.04 -0.02 1.88 16 6 N -0.72 -8.87 5.45 -60.29 -0.33 -9.20 16 7 C 0.51 6.94 7.22 -10.99 -0.08 6.86 16 8 O -0.53 -9.45 15.84 5.56 0.09 -9.36 16 9 C 0.13 1.38 2.99 -69.08 -0.21 1.18 16 10 H 0.12 1.30 7.58 -51.93 -0.39 0.91 16 11 C -0.16 -1.34 9.38 37.16 0.35 -0.99 16 12 N -0.71 -8.27 4.95 -56.27 -0.28 -8.55 16 13 C 0.60 7.40 7.75 -12.90 -0.10 7.30 16 14 O -0.53 -7.83 16.50 5.18 0.09 -7.74 16 15 C -0.27 -2.82 6.45 -36.79 -0.24 -3.06 16 16 C -0.05 -0.50 10.01 -40.43 -0.40 -0.90 16 17 C -0.15 -1.10 10.15 -41.41 -0.42 -1.52 16 18 C -0.23 -1.59 10.92 29.18 0.32 -1.27 16 19 S 0.21 1.78 22.16 -107.50 -2.38 -0.61 16 20 N -0.72 -17.41 4.57 -53.43 -0.24 -17.65 16 21 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 22 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 23 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 24 N -0.93 -28.15 13.06 55.49 0.72 -27.43 16 25 Si 0.90 22.52 29.55 -169.99 -5.02 17.50 16 26 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 27 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 28 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.04 0.50 8.14 -51.92 -0.42 0.08 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.09 1.73 7.75 -51.93 -0.40 1.33 16 36 H 0.40 3.58 7.89 -40.82 -0.32 3.26 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.48 7.57 -51.93 -0.39 0.09 16 40 H 0.41 4.68 6.90 -40.82 -0.28 4.39 16 41 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 42 H 0.15 0.71 8.06 -52.49 -0.42 0.29 16 43 H 0.17 0.74 8.06 -52.49 -0.42 0.32 16 44 H 0.38 9.88 7.80 -40.82 -0.32 9.56 16 45 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 395.52 15.07 5.96 5.96 Total: -1.00 -34.16 395.52 -9.15 -43.31 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: -6.73 Total: 12.84 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -1.02 Total: 0.93 kcal Atomic # 7 Polarization: -62.70 SS G_CDS: -0.13 Total: -62.83 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: 0.17 Total: -17.10 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Atomic # 16 Polarization: 1.78 SS G_CDS: -2.38 Total: -0.61 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.16 -9.15 -43.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328388167.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.819 kcal (2) G-P(sol) polarization free energy of solvation -34.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds