Wall clock time and date at job start Sat Apr 11 2020 05:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47166 * 2 1 4 4 C 1.52992 * 109.47448 * 120.00767 * 2 1 3 5 5 C 1.52997 * 109.47482 * 184.99813 * 4 2 1 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00597 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99622 * 179.97438 * 7 6 5 10 10 H 1.09002 * 109.47060 * 60.00278 * 9 7 6 11 11 C 1.53002 * 109.47419 * 300.00197 * 9 7 6 12 12 N 1.46504 * 109.47396 * 180.02562 * 9 7 6 13 13 C 1.34773 * 120.00556 * 205.00034 * 12 9 7 14 14 O 1.21706 * 119.99652 * 0.02562 * 13 12 9 15 15 C 1.46582 * 120.00274 * 179.97438 * 13 12 9 16 16 C 1.36646 * 125.45531 * 180.02562 * 15 13 12 17 17 C 1.37479 * 113.29256 * 180.02562 * 16 15 13 18 18 C 1.33819 * 115.10096 * 359.97438 * 17 16 15 19 19 S 1.70621 * 110.95447 * 359.73026 * 18 17 16 20 20 N 1.46502 * 109.46969 * 240.00729 * 2 1 3 21 21 C 1.36941 * 120.00103 * 84.99785 * 20 2 1 22 22 H 1.08000 * 119.99734 * 0.02562 * 21 20 2 23 23 C 1.38812 * 119.99814 * 180.02562 * 21 20 2 24 24 N 1.31613 * 120.00446 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 119.99795 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47005 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47173 * 119.99511 * 25 23 21 28 28 H 1.48503 * 109.46673 * 239.99595 * 25 23 21 29 29 H 1.09004 * 109.47224 * 59.99257 * 1 2 3 30 30 H 1.09000 * 109.47346 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46964 * 299.99762 * 1 2 3 32 32 H 1.09002 * 109.47103 * 64.99566 * 4 2 1 33 33 H 1.08998 * 109.46862 * 305.00378 * 4 2 1 34 34 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 35 35 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 36 36 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 37 37 H 1.08996 * 109.47407 * 179.97438 * 11 9 7 38 38 H 1.08992 * 109.47063 * 300.00072 * 11 9 7 39 39 H 1.09004 * 109.46733 * 60.00358 * 11 9 7 40 40 H 0.97007 * 119.99492 * 25.00055 * 12 9 7 41 41 H 1.07998 * 123.35791 * 359.97438 * 16 15 13 42 42 H 1.07997 * 122.44834 * 180.02562 * 17 16 15 43 43 H 1.07996 * 124.52116 * 180.02562 * 18 17 16 44 44 H 0.97003 * 120.00235 * 265.00555 * 20 2 1 45 45 H 0.96996 * 120.00501 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5648 -0.6135 1.3135 6 7 4.0531 -1.3037 2.5099 7 6 5.3740 -1.3399 2.7750 8 8 6.1584 -0.8006 2.0235 9 6 5.8763 -2.0494 4.0060 10 1 5.5874 -3.0996 3.9633 11 6 5.2668 -1.4031 5.2517 12 7 7.3364 -1.9462 4.0677 13 6 8.0497 -2.8719 4.7390 14 8 7.4809 -3.7939 5.2936 15 6 9.5106 -2.7689 4.8002 16 6 10.3404 -3.6414 5.4463 17 6 11.6694 -3.3051 5.3433 18 6 11.9214 -2.1965 4.6376 19 16 10.4765 -1.5071 4.0475 20 7 2.0183 -0.6905 -1.1963 21 6 2.1490 -0.0072 -2.3758 22 1 1.8925 1.0408 -2.4241 23 6 2.6112 -0.6616 -3.5094 24 7 2.9242 -1.9386 -3.4505 25 14 2.7902 0.2706 -5.1183 26 1 2.3762 1.6830 -4.9207 27 1 4.2070 0.2269 -5.5607 28 1 1.9290 -0.3572 -6.1525 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.7516 -1.7716 1.2053 33 1 1.6054 -0.2620 2.1368 34 1 3.8532 0.4368 1.3572 35 1 3.9994 -1.0729 0.4257 36 1 3.4258 -1.7353 3.1108 37 1 5.6297 -1.9165 6.1420 38 1 5.5556 -0.3530 5.2944 39 1 4.1804 -1.4796 5.2061 40 1 7.7897 -1.2115 3.6253 41 1 9.9873 -4.5084 5.9848 42 1 12.4528 -3.8932 5.7981 43 1 12.9081 -1.7946 4.4607 44 1 2.2489 -1.6317 -1.1529 45 1 3.2475 -2.3958 -4.2425 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328388167.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:43 Heat of formation + Delta-G solvation = -61.375530 kcal Electronic energy + Delta-G solvation = -26131.591805 eV Core-core repulsion = 22274.773448 eV Total energy + Delta-G solvation = -3856.818357 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.56635 -40.39483 -38.49314 -38.13701 -36.17737 -35.91741 -34.18896 -32.58444 -31.01051 -30.34413 -29.38596 -26.44942 -25.93392 -25.29951 -23.81718 -22.43806 -21.73164 -21.17845 -20.44002 -19.86558 -19.24651 -18.06579 -17.66000 -17.08091 -16.77204 -16.69916 -16.50575 -16.13720 -15.77398 -15.68456 -15.32310 -14.89572 -14.81279 -14.51253 -14.18019 -13.98010 -13.71946 -13.60502 -13.56897 -13.40933 -13.23327 -13.19416 -12.85719 -12.71903 -12.62109 -12.26428 -12.21459 -12.08966 -11.94036 -11.62967 -11.58818 -11.35348 -11.04532 -10.93202 -10.45689 -10.15345 -9.89060 -9.58448 -8.96857 -7.92348 -5.18789 -0.53330 0.45927 0.91928 1.35494 1.44657 1.45971 1.46940 1.56143 1.65011 2.08230 2.27917 2.57284 3.42261 3.46397 3.71192 3.92703 3.96004 4.01499 4.04674 4.12794 4.23914 4.33636 4.38984 4.52606 4.58781 4.68634 4.74015 4.79246 4.89771 4.99685 5.04096 5.10414 5.13834 5.14821 5.19171 5.23144 5.34782 5.39589 5.42143 5.55559 5.63611 6.22223 6.30967 6.42964 6.90890 7.10901 7.36911 8.15512 8.36019 9.31408 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013714 B = 0.002172 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.145072 B =12887.504833 C =14322.684344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.163 3.837 3 H 0.044 0.956 4 C -0.117 4.117 5 C 0.133 3.867 6 N -0.703 5.703 7 C 0.506 3.494 8 O -0.577 6.577 9 C 0.129 3.871 10 H 0.118 0.882 11 C -0.151 4.151 12 N -0.709 5.709 13 C 0.595 3.405 14 O -0.563 6.563 15 C -0.305 4.305 16 C -0.052 4.052 17 C -0.158 4.158 18 C -0.216 4.216 19 S 0.213 5.787 20 N -0.735 5.735 21 C -0.229 4.229 22 H 0.075 0.925 23 C -0.080 4.080 24 N -0.970 5.970 25 Si 0.965 3.035 26 H -0.265 1.265 27 H -0.299 1.299 28 H -0.295 1.295 29 H 0.031 0.969 30 H 0.044 0.956 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.108 0.892 34 H 0.057 0.943 35 H 0.036 0.964 36 H 0.419 0.581 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.101 0.899 40 H 0.409 0.591 41 H 0.154 0.846 42 H 0.173 0.827 43 H 0.199 0.801 44 H 0.371 0.629 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.440 0.926 24.834 27.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.055 3.945 3 H 0.062 0.938 4 C -0.155 4.155 5 C 0.009 3.991 6 N -0.355 5.355 7 C 0.292 3.708 8 O -0.457 6.457 9 C 0.021 3.979 10 H 0.136 0.864 11 C -0.209 4.209 12 N -0.362 5.362 13 C 0.383 3.617 14 O -0.444 6.444 15 C -0.425 4.425 16 C -0.087 4.087 17 C -0.189 4.189 18 C -0.354 4.354 19 S 0.481 5.519 20 N -0.376 5.376 21 C -0.361 4.361 22 H 0.093 0.907 23 C -0.272 4.272 24 N -0.622 5.622 25 Si 0.795 3.205 26 H -0.189 1.189 27 H -0.226 1.226 28 H -0.222 1.222 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.127 0.873 34 H 0.076 0.924 35 H 0.055 0.945 36 H 0.257 0.743 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.120 0.880 40 H 0.246 0.754 41 H 0.172 0.828 42 H 0.190 0.810 43 H 0.216 0.784 44 H 0.203 0.797 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 12.215 2.150 23.675 26.727 hybrid contribution 0.594 -1.283 -0.639 1.552 sum 12.809 0.867 23.036 26.372 Atomic orbital electron populations 1.22268 0.97197 1.01000 1.00878 1.20472 0.93111 0.95287 0.85658 0.93762 1.21926 0.92429 1.02131 0.99023 1.21160 0.95388 0.96360 0.86198 1.45788 1.06825 1.56076 1.26803 1.20913 0.83055 0.80056 0.86826 1.90721 1.56335 1.47736 1.50920 1.20888 0.80892 1.02279 0.93824 0.86401 1.22122 1.02674 1.01190 0.94948 1.45674 1.06817 1.29166 1.54545 1.17166 0.85694 0.81033 0.77792 1.90795 1.71828 1.34220 1.47510 1.24533 0.96471 1.06647 1.14896 1.21057 0.92651 0.98564 0.96402 1.20303 0.96518 0.98793 1.03243 1.25811 1.04804 1.01223 1.03547 1.83337 0.95741 1.24697 1.48163 1.42675 1.78334 1.10233 1.06344 1.19639 1.34032 0.94069 0.88408 0.90721 1.25482 1.03496 0.96856 1.01329 1.69808 1.53103 1.10191 1.29100 0.85183 0.76550 0.78368 0.80394 1.18950 1.22622 1.22227 0.94960 0.93726 0.90496 0.91042 0.87325 0.92430 0.94521 0.74318 0.90921 0.91382 0.88012 0.75420 0.82795 0.80975 0.78359 0.79693 0.94348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.86 9.49 71.98 0.68 -4.17 16 2 C 0.16 5.83 2.89 44.99 0.13 5.96 16 3 H 0.04 1.63 8.08 -2.39 -0.02 1.61 16 4 C -0.12 -3.10 4.87 30.59 0.15 -2.95 16 5 C 0.13 4.10 5.56 86.38 0.48 4.58 16 6 N -0.70 -16.49 5.45 -463.06 -2.52 -19.01 16 7 C 0.51 13.81 7.22 87.66 0.63 14.44 16 8 O -0.58 -21.11 15.84 -3.03 -0.05 -21.16 16 9 C 0.13 2.80 2.99 44.25 0.13 2.94 16 10 H 0.12 2.58 7.58 -2.39 -0.02 2.56 16 11 C -0.15 -2.29 9.38 71.98 0.68 -1.61 16 12 N -0.71 -16.90 4.95 -450.15 -2.23 -19.12 16 13 C 0.59 15.13 7.75 86.42 0.67 15.80 16 14 O -0.56 -16.98 16.50 -4.37 -0.07 -17.05 16 15 C -0.31 -6.44 6.45 24.08 0.16 -6.28 16 16 C -0.05 -0.93 10.01 21.72 0.22 -0.71 16 17 C -0.16 -1.97 10.15 21.09 0.21 -1.76 16 18 C -0.22 -2.49 10.92 66.81 0.73 -1.76 16 19 S 0.21 3.41 22.16 -56.49 -1.25 2.16 16 20 N -0.74 -35.70 4.57 -322.95 -1.48 -37.18 16 21 C -0.23 -12.62 9.93 84.03 0.83 -11.79 16 22 H 0.07 3.97 7.83 -2.91 -0.02 3.94 16 23 C -0.08 -4.63 5.50 84.86 0.47 -4.17 16 24 N -0.97 -60.35 13.06 21.65 0.28 -60.07 16 25 Si 0.96 47.07 29.55 68.60 2.03 49.09 16 26 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 27 H -0.30 -14.76 7.11 99.48 0.71 -14.06 16 28 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 29 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 30 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 32 H 0.07 1.88 8.14 -2.39 -0.02 1.87 16 33 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.04 1.52 7.75 -2.39 -0.02 1.50 16 36 H 0.42 6.40 7.89 -92.71 -0.73 5.67 16 37 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.10 0.99 7.57 -2.39 -0.02 0.97 16 40 H 0.41 9.69 6.90 -92.70 -0.64 9.05 16 41 H 0.15 2.62 8.06 -2.91 -0.02 2.59 16 42 H 0.17 1.18 8.06 -2.91 -0.02 1.15 16 43 H 0.20 1.06 8.06 -2.91 -0.02 1.04 16 44 H 0.37 19.62 7.80 -92.71 -0.72 18.90 16 45 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -77.29 395.52 -0.19 -77.48 By element: Atomic # 1 Polarization: 37.42 SS G_CDS: -1.07 Total: 36.35 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: 6.17 Total: 8.52 kcal Atomic # 7 Polarization: -129.44 SS G_CDS: -5.94 Total: -135.38 kcal Atomic # 8 Polarization: -38.10 SS G_CDS: -0.12 Total: -38.22 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.09 kcal Atomic # 16 Polarization: 3.41 SS G_CDS: -1.25 Total: 2.16 kcal Total: -77.29 -0.19 -77.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328388167.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.102 kcal (2) G-P(sol) polarization free energy of solvation -77.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds