Wall clock time and date at job start Sat Apr 11 2020 05:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 5 5 C 1.34777 * 120.00376 * 275.00479 * 4 2 1 6 6 O 1.21697 * 119.99928 * 359.97438 * 5 4 2 7 7 C 1.46586 * 120.00074 * 179.97438 * 5 4 2 8 8 C 1.36648 * 125.45584 * 179.97438 * 7 5 4 9 9 C 1.37473 * 113.29285 * 179.97438 * 8 7 5 10 10 C 1.33813 * 115.10554 * 0.02562 * 9 8 7 11 11 S 1.70620 * 110.95298 * 359.75755 * 10 9 8 12 12 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 13 13 O 1.21277 * 120.00304 * 240.00314 * 12 2 1 14 14 N 1.34778 * 119.99637 * 59.99942 * 12 2 1 15 15 C 1.46505 * 119.99943 * 180.02562 * 14 12 2 16 16 C 1.52993 * 109.47021 * 180.02562 * 15 14 12 17 17 C 1.53008 * 109.46733 * 180.02562 * 16 15 14 18 18 H 1.09001 * 109.47171 * 304.99843 * 17 16 15 19 19 C 1.53005 * 109.46774 * 185.00054 * 17 16 15 20 20 N 1.46496 * 109.47324 * 65.00139 * 17 16 15 21 21 C 1.36931 * 119.99941 * 205.00077 * 20 17 16 22 22 H 1.08004 * 120.00326 * 359.97438 * 21 20 17 23 23 C 1.38820 * 120.00163 * 180.02562 * 21 20 17 24 24 N 1.31620 * 119.99683 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00255 * 180.02562 * 23 21 20 26 26 H 1.48507 * 109.46973 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47482 * 119.99671 * 25 23 21 28 28 H 1.48505 * 109.47019 * 240.00050 * 25 23 21 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 32 32 H 0.97006 * 119.99921 * 94.99902 * 4 2 1 33 33 H 1.07994 * 123.35316 * 359.95082 * 8 7 5 34 34 H 1.08006 * 122.44676 * 180.02562 * 9 8 7 35 35 H 1.07996 * 124.52594 * 180.02562 * 10 9 8 36 36 H 0.97000 * 120.00446 * 0.02562 * 14 12 2 37 37 H 1.09000 * 109.47120 * 300.00214 * 15 14 12 38 38 H 1.09002 * 109.46801 * 59.99643 * 15 14 12 39 39 H 1.08992 * 109.47399 * 299.99740 * 16 15 14 40 40 H 1.09002 * 109.47722 * 60.00088 * 16 15 14 41 41 H 1.09000 * 109.47443 * 60.00113 * 19 17 16 42 42 H 1.09004 * 109.46908 * 179.97438 * 19 17 16 43 43 H 1.09001 * 109.47099 * 299.99832 * 19 17 16 44 44 H 0.97004 * 119.99673 * 24.99357 * 20 17 16 45 45 H 0.96994 * 119.99792 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8579 1.1627 2.4117 7 6 2.6351 -0.7093 3.5542 8 6 2.8082 -0.1387 4.7837 9 6 3.2788 -1.0182 5.7297 10 6 3.4851 -2.2658 5.2923 11 16 3.0856 -2.4068 3.6395 12 6 2.0324 -0.7104 -1.2304 13 8 2.7296 -1.6965 -1.1191 14 7 1.7068 -0.2500 -2.4545 15 6 2.1947 -0.9409 -3.6507 16 6 1.6853 -0.2192 -4.8999 17 6 2.1944 -0.9413 -6.1491 18 1 3.2807 -1.0207 -6.1056 19 6 1.7904 -0.1507 -7.3953 20 7 1.6088 -2.2827 -6.2106 21 6 2.2532 -3.2805 -6.8919 22 1 3.1931 -3.0785 -7.3843 23 6 1.6981 -4.5515 -6.9507 24 7 0.5525 -4.7976 -6.3511 25 14 2.5775 -5.9128 -7.8794 26 1 3.8374 -5.3823 -8.4596 27 1 2.8913 -7.0254 -6.9473 28 1 1.7028 -6.4128 -8.9704 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 2.2490 -1.6317 1.1527 33 1 2.5968 0.8998 4.9915 34 1 3.4682 -0.7236 6.7514 35 1 3.8512 -3.0765 5.9047 36 1 1.1494 0.5389 -2.5436 37 1 3.2847 -0.9413 -3.6508 38 1 1.8310 -1.9684 -3.6505 39 1 0.5954 -0.2185 -4.9000 40 1 2.0494 0.8082 -4.8999 41 1 2.2261 0.8473 -7.3496 42 1 2.1534 -0.6649 -8.2852 43 1 0.7041 -0.0714 -7.4388 44 1 0.7646 -2.4640 -5.7686 45 1 0.1648 -5.6857 -6.3918 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328388169.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:46 Heat of formation + Delta-G solvation = -36.683966 kcal Electronic energy + Delta-G solvation = -26131.776309 eV Core-core repulsion = 22276.028658 eV Total energy + Delta-G solvation = -3855.747651 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.55180 -39.36501 -37.79757 -36.67564 -35.16359 -34.52066 -32.39283 -31.58694 -29.82299 -29.08972 -28.03654 -25.68199 -24.63377 -23.74687 -22.61199 -21.49570 -20.55142 -20.00647 -19.49241 -19.07214 -17.31646 -17.06465 -16.65761 -16.04159 -15.82201 -15.57352 -15.24286 -14.93461 -14.70922 -14.12187 -13.98759 -13.74699 -13.51500 -13.39630 -13.13083 -13.07484 -12.76998 -12.60843 -12.52593 -12.49571 -12.06510 -11.86435 -11.56873 -11.30219 -11.11910 -10.95065 -10.77876 -10.65585 -10.40482 -10.30525 -10.03286 -9.83569 -9.65466 -9.49002 -9.21287 -8.97658 -8.95949 -8.88586 -6.96274 -5.76318 -3.04869 0.14858 1.11513 1.53028 2.03370 2.54090 2.60080 2.90505 3.30540 3.44080 3.49916 3.51868 4.39985 4.56325 4.60049 4.64301 4.79623 4.88484 4.93585 5.09781 5.22842 5.32413 5.36751 5.49500 5.54475 5.57997 5.64964 5.79287 5.84495 5.88322 5.93747 6.00702 6.04333 6.14982 6.30605 6.36357 6.41675 6.59819 6.66921 6.84599 7.04476 7.13890 7.46958 7.71735 7.82732 8.16098 8.42091 9.53648 10.10012 10.44596 11.46379 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014742 B = 0.002136 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.921613 B =13103.239324 C =14497.915922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.126 3.874 3 H 0.116 0.884 4 N -0.708 5.708 5 C 0.596 3.404 6 O -0.532 6.532 7 C -0.270 4.270 8 C -0.054 4.054 9 C -0.153 4.153 10 C -0.231 4.231 11 S 0.217 5.783 12 C 0.506 3.494 13 O -0.533 6.533 14 N -0.720 5.720 15 C 0.121 3.879 16 C -0.133 4.133 17 C 0.174 3.826 18 H 0.049 0.951 19 C -0.163 4.163 20 N -0.723 5.723 21 C -0.237 4.237 22 H 0.070 0.930 23 C -0.014 4.014 24 N -0.932 5.932 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.293 1.293 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.409 0.591 33 H 0.154 0.846 34 H 0.146 0.854 35 H 0.170 0.830 36 H 0.399 0.601 37 H 0.065 0.935 38 H 0.087 0.913 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.035 0.965 42 H 0.054 0.946 43 H 0.046 0.954 44 H 0.383 0.617 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.027 11.448 22.135 25.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.018 3.982 3 H 0.134 0.866 4 N -0.361 5.361 5 C 0.383 3.617 6 O -0.410 6.410 7 C -0.391 4.391 8 C -0.088 4.088 9 C -0.184 4.184 10 C -0.369 4.369 11 S 0.484 5.516 12 C 0.290 3.710 13 O -0.409 6.409 14 N -0.371 5.371 15 C -0.001 4.001 16 C -0.171 4.171 17 C 0.064 3.936 18 H 0.067 0.933 19 C -0.224 4.224 20 N -0.365 5.365 21 C -0.368 4.368 22 H 0.088 0.912 23 C -0.210 4.210 24 N -0.581 5.581 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.220 1.220 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.246 0.754 33 H 0.172 0.828 34 H 0.163 0.837 35 H 0.187 0.813 36 H 0.233 0.767 37 H 0.083 0.917 38 H 0.105 0.895 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.054 0.946 42 H 0.073 0.927 43 H 0.065 0.935 44 H 0.217 0.783 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.495 10.224 21.071 23.553 hybrid contribution 0.010 0.125 0.649 0.661 sum 2.504 10.349 21.720 24.189 Atomic orbital electron populations 1.22151 0.92449 1.03605 1.03705 1.20814 0.95945 0.98041 0.83423 0.86595 1.45619 1.67327 1.14746 1.08456 1.16886 0.77155 0.86009 0.81660 1.90823 1.50643 1.14846 1.84693 1.24588 1.16589 0.98975 0.98910 1.20799 0.96387 1.01452 0.90175 1.20053 1.04221 0.92508 1.01596 1.25414 1.08156 1.02363 1.00965 1.83385 1.58120 1.05372 1.04723 1.20432 0.80785 0.84928 0.84843 1.90739 1.37715 1.25976 1.86471 1.46037 1.53278 1.31926 1.05853 1.21518 0.99183 0.97694 0.81712 1.22067 1.01408 0.98827 0.94846 1.20156 0.96726 0.86178 0.90585 0.93277 1.22425 1.00843 0.98274 1.00814 1.42454 1.25929 1.04540 1.63613 1.19267 1.03066 0.89319 1.25147 0.91156 1.24728 0.97382 0.97640 1.01206 1.69661 1.18967 1.21243 1.48217 0.86149 0.78646 0.82473 0.79120 1.20588 1.21887 1.21976 0.91386 0.90573 0.90745 0.75370 0.82843 0.83663 0.81278 0.76730 0.91657 0.89487 0.91502 0.91832 0.94560 0.92717 0.93504 0.78304 0.93616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.38 37.16 0.35 -1.13 16 2 C 0.13 1.39 2.98 -69.09 -0.21 1.19 16 3 H 0.12 1.21 7.58 -51.93 -0.39 0.82 16 4 N -0.71 -8.26 4.95 -56.28 -0.28 -8.54 16 5 C 0.60 7.28 7.75 -12.89 -0.10 7.18 16 6 O -0.53 -7.67 16.50 5.19 0.09 -7.59 16 7 C -0.27 -2.79 6.45 -36.79 -0.24 -3.03 16 8 C -0.05 -0.49 10.01 -40.44 -0.40 -0.89 16 9 C -0.15 -1.08 10.15 -41.41 -0.42 -1.50 16 10 C -0.23 -1.57 10.92 29.18 0.32 -1.25 16 11 S 0.22 1.80 22.16 -107.50 -2.38 -0.59 16 12 C 0.51 6.93 7.22 -10.99 -0.08 6.85 16 13 O -0.53 -9.44 15.84 5.56 0.09 -9.35 16 14 N -0.72 -8.87 5.45 -60.30 -0.33 -9.20 16 15 C 0.12 1.90 5.56 -4.04 -0.02 1.88 16 16 C -0.13 -1.92 4.87 -26.73 -0.13 -2.05 16 17 C 0.17 3.23 2.89 -67.93 -0.20 3.03 16 18 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 19 C -0.16 -2.78 9.49 37.16 0.35 -2.42 16 20 N -0.72 -17.28 4.57 -53.42 -0.24 -17.53 16 21 C -0.24 -6.43 9.93 -15.06 -0.15 -6.58 16 22 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 23 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 24 N -0.93 -27.90 13.06 55.49 0.72 -27.17 16 25 Si 0.90 22.42 29.55 -169.99 -5.02 17.39 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 27 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 28 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.56 7.56 -51.93 -0.39 0.16 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.41 4.77 6.90 -40.82 -0.28 4.49 16 33 H 0.15 1.27 8.06 -52.49 -0.42 0.84 16 34 H 0.15 0.69 8.06 -52.48 -0.42 0.26 16 35 H 0.17 0.74 8.06 -52.49 -0.42 0.31 16 36 H 0.40 3.58 7.89 -40.82 -0.32 3.26 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.09 1.71 7.75 -51.93 -0.40 1.31 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.38 9.77 7.80 -40.82 -0.32 9.45 16 45 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 395.52 15.07 5.96 5.96 Total: -1.00 -33.77 395.52 -9.15 -42.92 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -6.73 Total: 12.91 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -1.02 Total: 0.78 kcal Atomic # 7 Polarization: -62.31 SS G_CDS: -0.13 Total: -62.44 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: 0.17 Total: -16.94 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.39 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -2.38 Total: -0.59 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.77 -9.15 -42.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328388169.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.232 kcal (2) G-P(sol) polarization free energy of solvation -33.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds