Wall clock time and date at job start Sat Apr 11 2020 05:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46909 * 2 1 4 4 N 1.46507 * 109.47018 * 240.00753 * 2 1 3 5 5 C 1.36939 * 120.00179 * 84.99792 * 4 2 1 6 6 H 1.08003 * 119.99865 * 0.02562 * 5 4 2 7 7 C 1.38804 * 119.99812 * 180.02562 * 5 4 2 8 8 N 1.31619 * 120.00001 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00026 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47125 * 90.00177 * 9 7 5 11 11 H 1.48506 * 109.46921 * 209.99873 * 9 7 5 12 12 H 1.48489 * 109.47502 * 329.99903 * 9 7 5 13 13 C 1.52996 * 109.47660 * 120.00512 * 2 1 3 14 14 H 1.09003 * 109.50788 * 299.90052 * 13 2 1 15 15 C 1.53293 * 109.55648 * 179.77393 * 13 2 1 16 16 N 1.47168 * 108.40979 * 187.77220 * 15 13 2 17 17 C 1.34787 * 120.98757 * 230.54094 * 16 15 13 18 18 O 1.21281 * 119.99540 * 359.92842 * 17 16 15 19 19 C 1.50698 * 120.00132 * 179.97438 * 17 16 15 20 20 C 1.52999 * 109.47318 * 180.02562 * 19 17 16 21 21 C 1.50700 * 109.47158 * 180.02562 * 20 19 17 22 22 C 1.33637 * 122.74914 * 125.00067 * 21 20 19 23 23 S 1.76197 * 107.92291 * 180.02562 * 22 21 20 24 24 C 1.70982 * 90.28215 * 359.97438 * 23 22 21 25 25 N 1.29026 * 110.16722 * 359.73840 * 24 23 22 26 26 C 1.47150 * 118.03241 * 50.46649 * 16 15 13 27 27 C 1.53297 * 108.41463 * 309.53266 * 26 16 15 28 28 O 1.42959 * 109.22380 * 52.27862 * 27 26 16 29 29 H 1.09001 * 109.47033 * 59.99678 * 1 2 3 30 30 H 1.08999 * 109.47114 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47038 * 299.99708 * 1 2 3 32 32 H 0.97002 * 119.99406 * 264.99680 * 4 2 1 33 33 H 0.97001 * 120.00145 * 179.97438 * 8 7 5 34 34 H 1.08999 * 109.68082 * 307.46659 * 15 13 2 35 35 H 1.08993 * 109.68420 * 68.02546 * 15 13 2 36 36 H 1.09005 * 109.47253 * 300.00572 * 19 17 16 37 37 H 1.09001 * 109.46593 * 59.99903 * 19 17 16 38 38 H 1.08997 * 109.46955 * 300.00310 * 20 19 17 39 39 H 1.09001 * 109.46807 * 60.00116 * 20 19 17 40 40 H 1.07995 * 126.03745 * 359.97438 * 22 21 20 41 41 H 1.08004 * 124.91435 * 180.02562 * 24 23 22 42 42 H 1.09002 * 109.68441 * 189.78658 * 26 16 15 43 43 H 1.08999 * 109.68020 * 69.26999 * 26 16 15 44 44 H 1.08999 * 109.51259 * 172.20847 * 27 26 16 45 45 H 1.09007 * 109.50644 * 292.30398 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1491 -0.0072 -2.3759 6 1 1.8926 1.0408 -2.4241 7 6 2.6113 -0.6616 -3.5094 8 7 2.7365 -0.0051 -4.6432 9 14 3.0555 -2.4741 -3.4256 10 1 1.8581 -3.2925 -3.7445 11 1 4.1305 -2.7661 -4.4077 12 1 3.5312 -2.8045 -2.0583 13 6 2.0401 -0.7213 1.2491 14 1 1.6786 -0.2070 2.1396 15 6 3.5731 -0.7273 1.2481 16 7 4.0352 -1.5831 2.3526 17 6 4.9534 -1.1417 3.2351 18 8 5.4124 -0.0245 3.1247 19 6 5.4104 -2.0366 4.3581 20 6 6.4468 -1.2991 5.2084 21 6 6.9042 -2.1943 6.3311 22 6 8.1907 -2.4868 6.5441 23 16 8.2797 -3.5542 7.9432 24 6 6.5782 -3.5003 8.1030 25 7 6.0689 -2.7481 7.1868 26 6 3.4639 -2.9344 2.4661 27 6 1.9363 -2.8208 2.4077 28 8 1.5641 -2.0693 1.2499 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.2491 -1.6317 -1.1528 33 1 3.0598 -0.4623 -5.4353 34 1 3.9380 -1.1232 0.3004 35 1 3.9443 0.2876 1.3899 36 1 4.5560 -2.3052 4.9793 37 1 5.8567 -2.9405 3.9436 38 1 7.3013 -1.0302 4.5875 39 1 6.0000 -0.3954 5.6229 40 1 9.0278 -2.1323 5.9611 41 1 6.0121 -4.0172 8.8639 42 1 3.7629 -3.3810 3.4144 43 1 3.8178 -3.5530 1.6414 44 1 1.4990 -3.8176 2.3509 45 1 1.5744 -2.3150 3.3029 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330448576.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:48 Heat of formation + Delta-G solvation = -14.539616 kcal Electronic energy + Delta-G solvation = -27343.758221 eV Core-core repulsion = 23488.970821 eV Total energy + Delta-G solvation = -3854.787400 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.58499 -40.07231 -38.48649 -35.65921 -34.60005 -33.82888 -32.28378 -30.69790 -30.12115 -28.90918 -27.86106 -25.94071 -24.69865 -23.76571 -23.29021 -22.05342 -19.95590 -19.81848 -19.10481 -18.35792 -17.77255 -17.21954 -16.44072 -16.27928 -15.95839 -15.60869 -15.14757 -14.83098 -14.78114 -14.33580 -14.02384 -13.95745 -13.69706 -13.59051 -13.34802 -12.99109 -12.74775 -12.54825 -12.38708 -12.11591 -11.89128 -11.82142 -11.63278 -11.33699 -11.25465 -10.91533 -10.84642 -10.61488 -10.30033 -10.08850 -10.04100 -9.94610 -9.89250 -9.73555 -9.53468 -9.22563 -8.93030 -8.46525 -7.21996 -5.73199 -3.07934 0.30155 0.97429 1.30791 2.35618 2.58371 2.88949 3.40873 3.45547 3.48398 3.78493 3.86009 4.31020 4.61288 4.63277 4.71900 4.75426 4.80237 4.88077 4.93839 5.02204 5.12432 5.20995 5.25828 5.27582 5.40524 5.56341 5.59222 5.60189 5.64462 5.70073 5.71901 5.87719 5.90928 6.14555 6.24965 6.32616 6.44620 6.50798 6.73414 7.06745 7.29239 7.33043 7.35020 8.03757 8.11408 8.46154 9.25685 9.97808 10.19143 11.45168 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019054 B = 0.002358 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.169630 B =11872.973494 C =12282.151460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.188 3.812 3 H 0.069 0.931 4 N -0.742 5.742 5 C -0.241 4.241 6 H 0.091 0.909 7 C 0.005 3.995 8 N -0.934 5.934 9 Si 0.884 3.116 10 H -0.285 1.285 11 H -0.293 1.293 12 H -0.277 1.277 13 C 0.075 3.925 14 H 0.060 0.940 15 C 0.084 3.916 16 N -0.615 5.615 17 C 0.515 3.485 18 O -0.540 6.540 19 C -0.130 4.130 20 C -0.028 4.028 21 C 0.067 3.933 22 C -0.251 4.251 23 S 0.112 5.888 24 C 0.023 3.977 25 N -0.466 5.466 26 C 0.070 3.930 27 C 0.047 3.953 28 O -0.364 6.364 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.036 0.964 32 H 0.367 0.633 33 H 0.259 0.741 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.179 0.821 41 H 0.200 0.800 42 H 0.091 0.909 43 H 0.078 0.922 44 H 0.103 0.897 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.735 -10.090 28.298 31.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.078 3.922 3 H 0.087 0.913 4 N -0.386 5.386 5 C -0.371 4.371 6 H 0.108 0.892 7 C -0.191 4.191 8 N -0.582 5.582 9 Si 0.715 3.285 10 H -0.211 1.211 11 H -0.220 1.220 12 H -0.203 1.203 13 C 0.016 3.984 14 H 0.078 0.922 15 C -0.038 4.038 16 N -0.349 5.349 17 C 0.303 3.697 18 O -0.418 6.418 19 C -0.171 4.171 20 C -0.069 4.069 21 C -0.064 4.064 22 C -0.390 4.390 23 S 0.364 5.636 24 C -0.275 4.275 25 N -0.180 5.180 26 C -0.054 4.054 27 C -0.031 4.031 28 O -0.282 6.282 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.200 0.800 33 H 0.069 0.931 34 H 0.109 0.891 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.196 0.804 41 H 0.217 0.783 42 H 0.109 0.891 43 H 0.097 0.903 44 H 0.121 0.879 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.107 -9.820 28.462 31.181 hybrid contribution 0.178 -0.948 -0.467 1.071 sum 8.285 -10.768 27.996 31.118 Atomic orbital electron populations 1.22315 0.97978 1.01578 1.00184 1.20240 0.92954 0.94911 0.84094 0.91327 1.42732 1.79330 1.09770 1.06779 1.19080 1.36800 0.95553 0.85622 0.89159 1.24642 1.01534 0.97378 0.95552 1.69702 1.52782 1.35528 1.00213 0.86552 0.78042 0.87061 0.76889 1.21139 1.21985 1.20334 1.22978 0.92291 0.83276 0.99883 0.92210 1.22427 0.94888 0.96911 0.89560 1.48249 1.41740 1.15583 1.29290 1.20623 0.78715 0.87740 0.82623 1.90706 1.56019 1.20717 1.74329 1.21579 1.00753 0.99004 0.95718 1.19936 0.99288 0.95929 0.91724 1.20399 0.88398 0.99930 0.97691 1.26928 1.01607 1.06919 1.03582 1.84102 1.09194 1.44325 1.25977 1.28435 0.95656 1.01629 1.01819 1.66130 1.38274 1.09541 1.04021 1.22490 0.95436 0.84142 1.03288 1.22898 0.92976 0.97555 0.89649 1.88066 1.75302 1.23900 1.40928 0.92265 0.92662 0.94505 0.79969 0.93139 0.89150 0.88152 0.88097 0.89071 0.89261 0.89141 0.80358 0.78349 0.89082 0.90325 0.87918 0.92943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 9.35 37.16 0.35 -2.53 16 2 C 0.19 3.61 2.74 -67.93 -0.19 3.42 16 3 H 0.07 1.34 8.08 -51.93 -0.42 0.92 16 4 N -0.74 -17.41 4.09 -53.42 -0.22 -17.63 16 5 C -0.24 -6.72 10.41 -15.06 -0.16 -6.88 16 6 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16 7 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 8 N -0.93 -29.47 13.97 55.49 0.78 -28.69 16 9 Si 0.88 22.45 27.73 -169.99 -4.71 17.73 16 10 H -0.28 -7.24 7.11 56.52 0.40 -6.83 16 11 H -0.29 -7.56 7.11 56.52 0.40 -7.15 16 12 H -0.28 -6.64 6.52 56.52 0.37 -6.28 16 13 C 0.07 1.22 2.53 -26.58 -0.07 1.15 16 14 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 15 C 0.08 1.41 5.86 -3.53 -0.02 1.39 16 16 N -0.61 -8.52 3.02 -172.27 -0.52 -9.04 16 17 C 0.51 7.08 7.71 -10.98 -0.08 6.99 16 18 O -0.54 -9.33 15.45 5.56 0.09 -9.24 16 19 C -0.13 -1.28 3.98 -27.88 -0.11 -1.39 16 20 C -0.03 -0.28 5.00 -27.88 -0.14 -0.42 16 21 C 0.07 0.61 6.07 -84.23 -0.51 0.10 16 22 C -0.25 -1.86 11.07 29.12 0.32 -1.54 16 23 S 0.11 0.65 23.22 -107.50 -2.50 -1.85 16 24 C 0.02 0.15 12.23 51.58 0.63 0.78 16 25 N -0.47 -4.31 10.35 -11.89 -0.12 -4.43 16 26 C 0.07 0.75 6.54 -3.53 -0.02 0.73 16 27 C 0.05 0.53 6.99 37.31 0.26 0.79 16 28 O -0.36 -5.76 9.22 -35.23 -0.32 -6.08 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.05 1.01 7.68 -51.93 -0.40 0.61 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.37 8.69 5.06 -40.82 -0.21 8.49 16 33 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 34 H 0.09 1.75 7.26 -51.93 -0.38 1.38 16 35 H 0.10 1.78 7.08 -51.93 -0.37 1.41 16 36 H 0.10 0.92 7.59 -51.93 -0.39 0.53 16 37 H 0.09 0.78 8.02 -51.93 -0.42 0.37 16 38 H 0.09 0.86 7.98 -51.93 -0.41 0.44 16 39 H 0.09 0.97 8.10 -51.93 -0.42 0.55 16 40 H 0.18 1.01 8.06 -52.49 -0.42 0.58 16 41 H 0.20 0.65 8.06 -52.48 -0.42 0.23 16 42 H 0.09 0.70 6.05 -51.93 -0.31 0.39 16 43 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 45 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 378.03 15.07 5.70 5.70 Total: -1.00 -34.77 378.03 -8.38 -43.14 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -6.70 Total: 7.76 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: 0.17 Total: 2.64 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: -0.09 Total: -59.80 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.24 Total: -15.32 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.71 Total: 17.73 kcal Atomic # 16 Polarization: 0.65 SS G_CDS: -2.50 Total: -1.85 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.77 -8.38 -43.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330448576.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.605 kcal (2) G-P(sol) polarization free energy of solvation -34.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds