Wall clock time and date at job start Sat Apr 11 2020 05:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47385 * 2 1 4 4 C 1.52997 * 109.47454 * 120.00460 * 2 1 3 5 5 N 1.46500 * 109.47423 * 174.99786 * 4 2 1 6 6 C 1.34773 * 119.99939 * 179.97438 * 5 4 2 7 7 O 1.21631 * 119.99999 * 0.02562 * 6 5 4 8 8 C 1.47263 * 120.00007 * 180.02562 * 6 5 4 9 9 C 1.46684 * 126.94237 * 0.02605 * 8 6 5 10 10 C 1.34485 * 106.33486 * 179.97438 * 9 8 6 11 11 N 1.36448 * 108.85526 * 0.02562 * 10 9 8 12 12 C 1.46502 * 124.85028 * 179.97438 * 11 10 9 13 13 C 1.34659 * 110.29795 * 359.74896 * 11 10 9 14 14 N 1.46506 * 109.47298 * 240.00388 * 2 1 3 15 15 C 1.46492 * 119.99800 * 300.00126 * 14 2 1 16 16 C 1.34773 * 119.99968 * 119.99670 * 14 2 1 17 17 O 1.21283 * 120.00360 * 359.73034 * 16 14 2 18 18 C 1.50706 * 120.00081 * 180.02562 * 16 14 2 19 19 S 1.80996 * 109.47276 * 179.72626 * 18 16 14 20 20 C 1.76195 * 99.99998 * 179.97438 * 19 18 16 21 21 H 1.08007 * 120.00003 * 0.02562 * 20 19 18 22 22 C 1.38797 * 120.00413 * 180.02562 * 20 19 18 23 23 N 1.31631 * 119.99814 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00484 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46882 * 59.99910 * 24 22 20 26 26 H 1.48501 * 109.47377 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47309 * 300.00007 * 24 22 20 28 28 H 1.08999 * 109.47043 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47065 * 299.99505 * 1 2 3 30 30 H 1.09005 * 109.47165 * 59.99636 * 1 2 3 31 31 H 1.09001 * 109.46828 * 295.00046 * 4 2 1 32 32 H 1.09006 * 109.47092 * 55.00023 * 4 2 1 33 33 H 0.96993 * 119.99749 * 0.02562 * 5 4 2 34 34 H 1.08000 * 126.83368 * 359.95707 * 9 8 6 35 35 H 1.07992 * 125.57401 * 180.02562 * 10 9 8 36 36 H 1.09002 * 109.46849 * 90.02371 * 12 11 10 37 37 H 1.08997 * 109.47103 * 210.02012 * 12 11 10 38 38 H 1.08999 * 109.47298 * 330.02276 * 12 11 10 39 39 H 1.08000 * 125.80424 * 180.30237 * 13 11 10 40 40 H 1.09001 * 109.47443 * 269.99328 * 15 14 2 41 41 H 1.08999 * 109.47479 * 30.00306 * 15 14 2 42 42 H 1.09006 * 109.47080 * 149.99714 * 15 14 2 43 43 H 1.09001 * 109.46564 * 299.73030 * 18 16 14 44 44 H 1.08998 * 109.47012 * 59.72084 * 18 16 14 45 45 H 0.97001 * 120.00629 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5001 -0.8265 1.1904 6 6 4.1731 -1.4284 2.1910 7 8 3.5682 -1.8848 3.1424 8 6 5.6408 -1.5337 2.1322 9 6 6.5180 -1.0399 1.0653 10 6 7.7732 -1.3541 1.4320 11 7 7.7332 -1.9990 2.6338 12 6 8.9064 -2.4979 3.3556 13 6 6.4617 -2.1070 3.0639 14 7 2.0183 -0.6905 -1.1962 15 6 1.6644 -2.0930 -1.4281 16 6 2.7931 -0.0355 -2.0833 17 8 3.0821 1.1271 -1.8939 18 6 3.2951 -0.7456 -3.3142 19 16 4.2940 0.3944 -4.3034 20 6 4.7378 -0.6668 -5.6380 21 1 4.3909 -1.6895 -5.6532 22 6 5.5333 -0.1886 -6.6700 23 7 5.9566 1.0577 -6.6513 24 14 6.0045 -1.3138 -8.0846 25 1 4.7755 -1.7889 -8.7696 26 1 6.8515 -0.5678 -9.0496 27 1 6.7605 -2.4792 -7.5595 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.7517 -0.1584 2.1369 32 1 1.6054 -1.7199 1.2950 33 1 3.9824 -0.4622 0.4318 34 1 6.2160 -0.5265 0.1645 35 1 8.6667 -1.1323 0.8675 36 1 9.2811 -1.7204 4.0213 37 1 8.6274 -3.3740 3.9409 38 1 9.6836 -2.7704 2.6416 39 1 6.1441 -2.5690 3.9869 40 1 2.4158 -2.7376 -0.9719 41 1 0.6904 -2.3001 -0.9849 42 1 1.6238 -2.2850 -2.5004 43 1 3.9044 -1.5994 -3.0178 44 1 2.4471 -1.0921 -3.9049 45 1 6.5123 1.3921 -7.3727 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334222474.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:48 Heat of formation + Delta-G solvation = -19.005496 kcal Electronic energy + Delta-G solvation = -26963.621485 eV Core-core repulsion = 23108.640430 eV Total energy + Delta-G solvation = -3854.981055 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.30201 -39.97282 -38.82284 -36.40850 -34.10419 -32.98841 -32.43871 -31.89962 -29.28626 -28.72453 -27.46823 -26.84642 -25.80231 -25.48633 -22.49083 -21.60116 -20.24308 -19.69438 -19.02324 -17.98084 -17.72989 -16.92654 -16.17725 -15.95542 -15.65199 -15.41511 -15.22883 -14.82272 -14.77183 -14.28738 -14.09795 -13.64194 -13.37234 -13.19367 -13.15855 -13.01868 -12.91440 -12.71518 -12.59020 -12.42144 -12.30554 -12.19809 -12.10004 -11.94312 -11.74306 -11.06879 -11.05001 -10.99791 -10.77066 -9.88038 -9.82414 -9.39789 -9.06861 -9.04784 -8.68022 -8.58142 -8.41147 -8.24371 -6.51144 -6.22617 -3.93155 1.72272 2.37829 2.63550 2.88330 2.99749 3.22418 3.24286 3.27873 3.41851 3.60241 3.64150 4.19493 4.44880 4.57830 4.78488 4.79590 4.85254 4.90252 5.04963 5.08116 5.10917 5.12627 5.14490 5.18898 5.42553 5.42781 5.47690 5.53636 5.58815 5.61991 5.76470 5.85273 5.88423 5.95528 6.02728 6.08808 6.13476 6.47545 6.65563 6.67397 6.91603 7.08259 7.49193 7.58504 7.66316 8.33998 8.38892 8.50827 9.22795 10.84640 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008656 B = 0.003412 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3233.913142 B = 8203.915210 C =10720.085346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.123 3.877 3 H 0.109 0.891 4 C 0.115 3.885 5 N -0.720 5.720 6 C 0.594 3.406 7 O -0.563 6.563 8 C -0.237 4.237 9 C -0.162 4.162 10 C -0.017 4.017 11 N -0.449 5.449 12 C 0.070 3.930 13 C 0.072 3.928 14 N -0.618 5.618 15 C 0.078 3.922 16 C 0.532 3.468 17 O -0.516 6.516 18 C -0.151 4.151 19 S -0.059 6.059 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.075 3.925 23 N -0.868 5.868 24 Si 0.917 3.083 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.405 0.595 34 H 0.149 0.851 35 H 0.169 0.831 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.173 0.827 40 H 0.054 0.946 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.503 -8.059 18.967 20.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.019 3.981 3 H 0.127 0.873 4 C -0.010 4.010 5 N -0.371 5.371 6 C 0.383 3.617 7 O -0.444 6.444 8 C -0.248 4.248 9 C -0.186 4.186 10 C -0.142 4.142 11 N -0.125 5.125 12 C -0.072 4.072 13 C -0.064 4.064 14 N -0.355 5.355 15 C -0.065 4.065 16 C 0.321 3.679 17 O -0.391 6.391 18 C -0.301 4.301 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.134 4.134 23 N -0.503 5.503 24 Si 0.743 3.257 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.241 0.759 34 H 0.167 0.833 35 H 0.186 0.814 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.190 0.810 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.094 0.906 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.095 -6.621 19.962 21.060 hybrid contribution 0.232 -2.021 -1.596 2.585 sum -0.864 -8.641 18.366 20.316 Atomic orbital electron populations 1.22052 0.93907 1.02595 1.03022 1.21302 0.94770 0.98589 0.83486 0.87294 1.21689 0.80514 1.01141 0.97703 1.45706 1.07322 1.60041 1.24047 1.17361 0.85941 0.76789 0.81580 1.90735 1.70132 1.49672 1.33832 1.20320 0.92389 1.12879 0.99173 1.22192 0.91728 1.04843 0.99810 1.21816 0.99737 1.03874 0.88820 1.43634 1.06453 1.44783 1.17616 1.22108 0.86965 1.00435 0.97711 1.21712 0.82425 1.02400 0.99832 1.47932 1.52137 1.12628 1.22764 1.21757 1.00688 0.81519 1.02563 1.20405 0.77129 0.86777 0.83633 1.90704 1.56455 1.16263 1.75634 1.23570 1.04293 1.04741 0.97536 1.85362 1.61358 1.15006 1.21525 1.22821 1.37566 0.99577 1.08440 0.91032 1.24969 0.95089 0.95504 0.97885 1.70003 1.33314 1.14254 1.32710 0.86252 0.78582 0.80062 0.80774 1.19949 1.20821 1.19943 0.92021 0.91167 0.91450 0.90625 0.91321 0.75910 0.83308 0.81358 0.90703 0.89717 0.89496 0.81013 0.92699 0.91175 0.90607 0.89229 0.89259 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.17 37.16 0.34 -1.09 16 2 C 0.12 1.43 2.80 -67.93 -0.19 1.24 16 3 H 0.11 1.50 6.90 -51.93 -0.36 1.14 16 4 C 0.11 1.33 4.97 -4.04 -0.02 1.31 16 5 N -0.72 -9.73 5.38 -61.43 -0.33 -10.06 16 6 C 0.59 8.88 7.81 -12.59 -0.10 8.78 16 7 O -0.56 -9.69 16.91 5.25 0.09 -9.60 16 8 C -0.24 -3.24 6.29 -103.35 -0.65 -3.89 16 9 C -0.16 -2.10 10.56 -37.50 -0.40 -2.50 16 10 C -0.02 -0.18 11.34 -16.82 -0.19 -0.37 16 11 N -0.45 -4.28 3.09 -124.53 -0.38 -4.66 16 12 C 0.07 0.35 11.03 59.85 0.66 1.01 16 13 C 0.07 0.82 11.12 -16.84 -0.19 0.63 16 14 N -0.62 -8.20 2.24 -173.93 -0.39 -8.59 16 15 C 0.08 0.83 9.40 59.84 0.56 1.39 16 16 C 0.53 9.49 7.40 -10.98 -0.08 9.41 16 17 O -0.52 -10.99 15.19 5.56 0.08 -10.91 16 18 C -0.15 -2.95 4.71 36.01 0.17 -2.78 16 19 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 20 C -0.54 -14.95 9.50 30.94 0.29 -14.66 16 21 H 0.07 1.89 7.80 -52.48 -0.41 1.48 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -25.72 13.22 55.49 0.73 -24.98 16 24 Si 0.92 21.09 29.55 -169.99 -5.02 16.06 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 28 H 0.06 0.49 6.66 -51.93 -0.35 0.14 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.78 7.84 -51.93 -0.41 0.37 16 33 H 0.41 5.76 6.99 -40.82 -0.29 5.48 16 34 H 0.15 1.99 7.70 -52.49 -0.40 1.58 16 35 H 0.17 1.42 8.06 -52.49 -0.42 1.00 16 36 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.08 0.30 8.13 -51.93 -0.42 -0.12 16 38 H 0.09 0.33 8.13 -51.93 -0.42 -0.09 16 39 H 0.17 1.65 8.06 -52.49 -0.42 1.22 16 40 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.59 6.43 -51.93 -0.33 0.25 16 42 H 0.08 0.80 6.43 -51.93 -0.33 0.47 16 43 H 0.09 1.64 8.11 -51.92 -0.42 1.22 16 44 H 0.09 1.64 7.39 -51.92 -0.38 1.25 16 45 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 392.73 15.07 5.92 5.92 Total: -1.00 -36.28 392.73 -8.02 -44.30 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -6.62 Total: 5.82 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: 0.12 Total: 0.48 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: -0.37 Total: -48.30 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: 0.17 Total: -20.51 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.28 -8.02 -44.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334222474.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.293 kcal (2) G-P(sol) polarization free energy of solvation -36.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds