Wall clock time and date at job start Sat Apr 11 2020 05:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47385 * 2 1 4 4 C 1.52997 * 109.47454 * 120.00460 * 2 1 3 5 5 N 1.46500 * 109.47423 * 174.99786 * 4 2 1 6 6 C 1.34773 * 119.99939 * 179.97438 * 5 4 2 7 7 O 1.21631 * 119.99999 * 0.02562 * 6 5 4 8 8 C 1.47263 * 120.00007 * 180.02562 * 6 5 4 9 9 C 1.46684 * 126.94237 * 0.02605 * 8 6 5 10 10 C 1.34485 * 106.33486 * 179.97438 * 9 8 6 11 11 N 1.36448 * 108.85526 * 0.02562 * 10 9 8 12 12 C 1.46502 * 124.85028 * 179.97438 * 11 10 9 13 13 C 1.34659 * 110.29795 * 359.74896 * 11 10 9 14 14 N 1.46506 * 109.47298 * 240.00388 * 2 1 3 15 15 C 1.46492 * 119.99800 * 300.00126 * 14 2 1 16 16 C 1.34773 * 119.99968 * 119.99670 * 14 2 1 17 17 O 1.21283 * 120.00360 * 359.73034 * 16 14 2 18 18 C 1.50706 * 120.00081 * 180.02562 * 16 14 2 19 19 S 1.80996 * 109.47276 * 179.72626 * 18 16 14 20 20 C 1.76195 * 99.99998 * 179.97438 * 19 18 16 21 21 H 1.08007 * 120.00003 * 0.02562 * 20 19 18 22 22 C 1.38797 * 120.00413 * 180.02562 * 20 19 18 23 23 N 1.31631 * 119.99814 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00484 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46882 * 59.99910 * 24 22 20 26 26 H 1.48501 * 109.47377 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47309 * 300.00007 * 24 22 20 28 28 H 1.08999 * 109.47043 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47065 * 299.99505 * 1 2 3 30 30 H 1.09005 * 109.47165 * 59.99636 * 1 2 3 31 31 H 1.09001 * 109.46828 * 295.00046 * 4 2 1 32 32 H 1.09006 * 109.47092 * 55.00023 * 4 2 1 33 33 H 0.96993 * 119.99749 * 0.02562 * 5 4 2 34 34 H 1.08000 * 126.83368 * 359.95707 * 9 8 6 35 35 H 1.07992 * 125.57401 * 180.02562 * 10 9 8 36 36 H 1.09002 * 109.46849 * 90.02371 * 12 11 10 37 37 H 1.08997 * 109.47103 * 210.02012 * 12 11 10 38 38 H 1.08999 * 109.47298 * 330.02276 * 12 11 10 39 39 H 1.08000 * 125.80424 * 180.30237 * 13 11 10 40 40 H 1.09001 * 109.47443 * 269.99328 * 15 14 2 41 41 H 1.08999 * 109.47479 * 30.00306 * 15 14 2 42 42 H 1.09006 * 109.47080 * 149.99714 * 15 14 2 43 43 H 1.09001 * 109.46564 * 299.73030 * 18 16 14 44 44 H 1.08998 * 109.47012 * 59.72084 * 18 16 14 45 45 H 0.97001 * 120.00629 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5001 -0.8265 1.1904 6 6 4.1731 -1.4284 2.1910 7 8 3.5682 -1.8848 3.1424 8 6 5.6408 -1.5337 2.1322 9 6 6.5180 -1.0399 1.0653 10 6 7.7732 -1.3541 1.4320 11 7 7.7332 -1.9990 2.6338 12 6 8.9064 -2.4979 3.3556 13 6 6.4617 -2.1070 3.0639 14 7 2.0183 -0.6905 -1.1962 15 6 1.6644 -2.0930 -1.4281 16 6 2.7931 -0.0355 -2.0833 17 8 3.0821 1.1271 -1.8939 18 6 3.2951 -0.7456 -3.3142 19 16 4.2940 0.3944 -4.3034 20 6 4.7378 -0.6668 -5.6380 21 1 4.3909 -1.6895 -5.6532 22 6 5.5333 -0.1886 -6.6700 23 7 5.9566 1.0577 -6.6513 24 14 6.0045 -1.3138 -8.0846 25 1 4.7755 -1.7889 -8.7696 26 1 6.8515 -0.5678 -9.0496 27 1 6.7605 -2.4792 -7.5595 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.7517 -0.1584 2.1369 32 1 1.6054 -1.7199 1.2950 33 1 3.9824 -0.4622 0.4318 34 1 6.2160 -0.5265 0.1645 35 1 8.6667 -1.1323 0.8675 36 1 9.2811 -1.7204 4.0213 37 1 8.6274 -3.3740 3.9409 38 1 9.6836 -2.7704 2.6416 39 1 6.1441 -2.5690 3.9869 40 1 2.4158 -2.7376 -0.9719 41 1 0.6904 -2.3001 -0.9849 42 1 1.6238 -2.2850 -2.5004 43 1 3.9044 -1.5994 -3.0178 44 1 2.4471 -1.0921 -3.9049 45 1 6.5123 1.3921 -7.3727 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334222474.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:47 Heat of formation + Delta-G solvation = -43.004605 kcal Electronic energy + Delta-G solvation = -26964.662164 eV Core-core repulsion = 23108.640430 eV Total energy + Delta-G solvation = -3856.021734 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.16374 -41.19854 -40.00414 -37.64382 -35.26060 -34.56255 -33.79322 -32.93682 -30.26042 -30.10397 -28.23030 -27.84686 -27.63090 -26.57626 -23.47068 -22.74783 -21.09856 -20.78576 -20.21438 -19.56725 -18.87718 -18.30168 -17.27965 -17.01816 -16.85983 -16.72381 -16.43985 -16.31435 -16.05895 -15.60526 -15.13929 -14.64550 -14.59389 -14.50810 -14.41586 -13.99269 -13.89151 -13.81597 -13.50964 -13.30578 -13.18359 -13.13296 -13.10578 -13.01406 -12.97297 -12.85956 -12.75088 -12.58744 -11.93291 -11.70276 -11.11062 -11.03954 -10.86541 -10.24126 -10.14912 -9.73577 -9.55133 -9.31556 -8.63341 -8.32425 -6.09705 0.74920 1.27027 1.44427 1.46472 1.46842 1.56052 1.57350 1.89635 2.08366 2.29392 2.44762 2.56037 3.01610 3.28506 3.59101 3.80336 3.95661 3.97998 4.06192 4.09796 4.20225 4.23435 4.29261 4.30675 4.46913 4.50007 4.54564 4.60620 4.67190 4.67934 4.74288 4.81141 4.90868 4.98399 5.04527 5.10263 5.27056 5.43154 5.43629 5.59746 5.72360 6.03762 6.21309 6.25686 6.32141 6.54083 7.09017 7.14029 7.26305 8.76269 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008656 B = 0.003412 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3233.913142 B = 8203.915210 C =10720.085346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.125 3.875 3 H 0.085 0.915 4 C 0.118 3.882 5 N -0.720 5.720 6 C 0.590 3.410 7 O -0.592 6.592 8 C -0.272 4.272 9 C -0.191 4.191 10 C -0.010 4.010 11 N -0.442 5.442 12 C 0.061 3.939 13 C 0.078 3.922 14 N -0.603 5.603 15 C 0.070 3.930 16 C 0.534 3.466 17 O -0.560 6.560 18 C -0.125 4.125 19 S -0.142 6.142 20 C -0.548 4.548 21 H 0.080 0.920 22 C 0.017 3.983 23 N -0.910 5.910 24 Si 0.994 3.006 25 H -0.263 1.263 26 H -0.279 1.279 27 H -0.262 1.262 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.401 0.599 34 H 0.132 0.868 35 H 0.193 0.807 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.190 0.810 40 H 0.058 0.942 41 H 0.101 0.899 42 H 0.078 0.922 43 H 0.103 0.897 44 H 0.106 0.894 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.595 -10.677 19.707 22.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.022 3.978 3 H 0.103 0.897 4 C -0.007 4.007 5 N -0.370 5.370 6 C 0.381 3.619 7 O -0.475 6.475 8 C -0.282 4.282 9 C -0.215 4.215 10 C -0.137 4.137 11 N -0.116 5.116 12 C -0.079 4.079 13 C -0.059 4.059 14 N -0.337 5.337 15 C -0.072 4.072 16 C 0.322 3.678 17 O -0.438 6.438 18 C -0.276 4.276 19 S 0.085 5.915 20 C -0.695 4.695 21 H 0.099 0.901 22 C -0.188 4.188 23 N -0.546 5.546 24 Si 0.816 3.184 25 H -0.188 1.188 26 H -0.204 1.204 27 H -0.187 1.187 28 H 0.100 0.900 29 H 0.107 0.893 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.235 0.765 34 H 0.150 0.850 35 H 0.210 0.790 36 H 0.107 0.893 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.207 0.793 40 H 0.077 0.923 41 H 0.120 0.880 42 H 0.097 0.903 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.208 -9.276 20.729 22.742 hybrid contribution 0.251 -1.240 -1.686 2.108 sum -0.957 -10.516 19.042 21.774 Atomic orbital electron populations 1.22021 0.91178 1.04081 1.03531 1.21397 0.96677 0.97116 0.82617 0.89700 1.21774 0.79514 1.01731 0.97655 1.45786 1.08122 1.59506 1.23538 1.17607 0.86617 0.76381 0.81277 1.90700 1.70790 1.51206 1.34779 1.20423 0.92093 1.15084 1.00579 1.22162 0.93000 1.06469 0.99859 1.22153 0.99647 1.02699 0.89216 1.43938 1.07127 1.43403 1.17104 1.22476 0.85625 1.01552 0.98232 1.21991 0.82922 1.01300 0.99731 1.47880 1.50222 1.13618 1.21984 1.22028 1.02485 0.79433 1.03247 1.20103 0.77656 0.86212 0.83858 1.90692 1.58421 1.18074 1.76616 1.23385 1.03676 1.03140 0.97447 1.85512 1.63623 1.18936 1.23435 1.23164 1.37718 0.99900 1.08760 0.90148 1.26057 0.94798 0.97092 1.00876 1.70167 1.34201 1.16437 1.33823 0.85067 0.78588 0.77899 0.76845 1.18789 1.20401 1.18688 0.89980 0.89283 0.92375 0.90039 0.90202 0.76488 0.84968 0.79050 0.89255 0.87906 0.87864 0.79318 0.92318 0.88019 0.90285 0.87834 0.87609 0.92024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.17 71.98 0.66 -1.74 16 2 C 0.13 2.84 2.80 44.99 0.13 2.97 16 3 H 0.08 2.40 6.90 -2.38 -0.02 2.38 16 4 C 0.12 2.63 4.97 86.38 0.43 3.06 16 5 N -0.72 -19.78 5.38 -466.52 -2.51 -22.29 16 6 C 0.59 17.91 7.81 86.62 0.68 18.59 16 7 O -0.59 -20.34 16.91 -4.13 -0.07 -20.41 16 8 C -0.27 -7.51 6.29 -19.04 -0.12 -7.63 16 9 C -0.19 -5.14 10.56 23.62 0.25 -4.89 16 10 C -0.01 -0.21 11.34 83.12 0.94 0.73 16 11 N -0.44 -7.64 3.09 -547.90 -1.69 -9.33 16 12 C 0.06 0.43 11.03 127.77 1.41 1.84 16 13 C 0.08 1.70 11.12 83.92 0.93 2.63 16 14 N -0.60 -15.51 2.24 -822.60 -1.85 -17.35 16 15 C 0.07 1.32 9.40 127.77 1.20 2.52 16 16 C 0.53 19.31 7.40 87.66 0.65 19.96 16 17 O -0.56 -24.94 15.19 -3.04 -0.05 -24.99 16 18 C -0.13 -4.92 4.71 71.24 0.34 -4.59 16 19 S -0.14 -7.75 20.57 -56.49 -1.16 -8.91 16 20 C -0.55 -30.87 9.50 67.95 0.65 -30.23 16 21 H 0.08 4.22 7.80 -2.91 -0.02 4.20 16 22 C 0.02 0.94 5.49 84.86 0.47 1.41 16 23 N -0.91 -55.19 13.22 21.65 0.29 -54.90 16 24 Si 0.99 43.04 29.55 68.60 2.03 45.07 16 25 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 26 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 27 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 28 H 0.08 1.00 6.66 -2.39 -0.02 0.98 16 29 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.08 1.64 7.84 -2.38 -0.02 1.63 16 33 H 0.40 11.93 6.99 -92.71 -0.65 11.29 16 34 H 0.13 3.87 7.70 -2.91 -0.02 3.84 16 35 H 0.19 2.94 8.06 -2.91 -0.02 2.92 16 36 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.10 0.41 8.13 -2.39 -0.02 0.39 16 38 H 0.10 0.45 8.13 -2.39 -0.02 0.43 16 39 H 0.19 3.33 8.06 -2.91 -0.02 3.31 16 40 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.10 1.32 6.43 -2.39 -0.02 1.30 16 42 H 0.08 1.48 6.43 -2.38 -0.02 1.46 16 43 H 0.10 3.75 8.11 -2.39 -0.02 3.73 16 44 H 0.11 3.79 7.39 -2.40 -0.02 3.77 16 45 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -82.10 392.73 3.95 -78.15 By element: Atomic # 1 Polarization: 29.97 SS G_CDS: 0.36 Total: 30.32 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: 8.60 Total: 4.64 kcal Atomic # 7 Polarization: -98.11 SS G_CDS: -5.76 Total: -103.88 kcal Atomic # 8 Polarization: -45.28 SS G_CDS: -0.12 Total: -45.39 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: -7.75 SS G_CDS: -1.16 Total: -8.91 kcal Total: -82.10 3.95 -78.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334222474.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.149 kcal (2) G-P(sol) polarization free energy of solvation -82.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds