Wall clock time and date at job start Sat Apr 11 2020 05:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47369 * 2 1 4 4 C 1.47205 * 109.47146 * 120.00231 * 2 1 3 5 5 N 2.60808 * 109.46919 * 120.00141 * 2 1 3 6 6 C 1.50703 * 109.47197 * 239.99649 * 2 1 3 7 7 O 1.21279 * 120.00470 * 240.00522 * 6 2 1 8 8 N 1.34772 * 119.99459 * 60.00101 * 6 2 1 9 9 C 1.46491 * 120.00479 * 0.02562 * 8 6 2 10 10 C 1.46510 * 119.99592 * 180.02562 * 8 6 2 11 11 H 1.08994 * 109.47163 * 359.97438 * 10 8 6 12 12 C 1.52998 * 109.46996 * 240.00102 * 10 8 6 13 13 N 1.46506 * 109.47237 * 54.99974 * 12 10 8 14 14 C 1.34773 * 119.99969 * 179.72043 * 13 12 10 15 15 O 1.21281 * 120.00220 * 0.02562 * 14 13 12 16 16 C 1.50706 * 120.00080 * 180.02562 * 14 13 12 17 17 S 1.80989 * 109.47203 * 180.02562 * 16 14 13 18 18 C 1.76206 * 100.00010 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99621 * 359.97438 * 18 17 16 20 20 C 1.38794 * 119.99924 * 180.02562 * 18 17 16 21 21 N 1.31628 * 120.00193 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99992 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.46908 * 59.99727 * 22 20 18 24 24 H 1.48496 * 109.47426 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46953 * 300.00039 * 22 20 18 26 26 C 1.52999 * 109.46806 * 120.00452 * 10 8 6 27 27 C 1.53003 * 117.49383 * 248.74153 * 26 10 8 28 28 C 1.53000 * 117.49553 * 180.08830 * 26 10 8 29 29 H 1.09003 * 109.47056 * 60.00102 * 1 2 3 30 30 H 1.09000 * 109.47369 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47097 * 300.00357 * 1 2 3 32 32 H 1.08997 * 109.47344 * 269.99952 * 9 8 6 33 33 H 1.08998 * 109.47293 * 29.99794 * 9 8 6 34 34 H 1.09001 * 109.47597 * 149.99922 * 9 8 6 35 35 H 1.09001 * 109.47671 * 295.00315 * 12 10 8 36 36 H 1.08998 * 109.47454 * 175.00312 * 12 10 8 37 37 H 0.97005 * 119.99811 * 0.02562 * 13 12 10 38 38 H 1.09004 * 109.46762 * 300.00389 * 16 14 13 39 39 H 1.08998 * 109.46924 * 59.99727 * 16 14 13 40 40 H 0.97004 * 119.99966 * 180.02562 * 21 20 18 41 41 H 1.08996 * 115.55273 * 34.41683 * 26 10 8 42 42 H 1.08998 * 117.49900 * 0.02562 * 27 26 10 43 43 H 1.09000 * 117.49401 * 145.02210 * 27 26 10 44 44 H 1.08999 * 117.49742 * 214.97684 * 28 26 10 45 45 H 1.08999 * 117.49821 * 359.97103 * 28 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0207 -0.6940 1.2019 5 7 2.3992 -1.2295 2.1295 6 6 2.0323 -0.7105 -1.2304 7 8 2.7295 -1.6966 -1.1192 8 7 1.7067 -0.2500 -2.4545 9 6 0.8650 0.9414 -2.5890 10 6 2.1946 -0.9410 -3.6507 11 1 2.8002 -1.7973 -3.3540 12 6 3.0449 0.0202 -4.4838 13 7 4.1159 0.5723 -3.6504 14 6 4.9982 1.4442 -4.1774 15 8 4.9054 1.7721 -5.3414 16 6 6.1003 2.0118 -3.3204 17 16 7.1105 3.1432 -4.3078 18 6 8.2852 3.6435 -3.0935 19 1 8.2248 3.2503 -2.0895 20 6 9.2875 4.5438 -3.4271 21 7 9.3609 5.0235 -4.6507 22 14 10.5325 5.0748 -2.1396 23 1 11.2696 3.8848 -1.6433 24 1 11.4916 6.0339 -2.7442 25 1 9.8264 5.7272 -1.0077 26 6 1.0042 -1.4214 -4.4833 27 6 0.7634 -2.9300 -4.5666 28 6 1.3073 -2.1733 -5.7809 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.1831 0.6439 -2.6221 33 1 1.0288 1.6002 -1.7362 34 1 1.1228 1.4666 -3.5086 35 1 2.4184 0.8313 -4.8547 36 1 3.4804 -0.5169 -5.3263 37 1 4.1926 0.3070 -2.7205 38 1 5.6650 2.5529 -2.4802 39 1 6.7238 1.2001 -2.9458 40 1 10.0616 5.6524 -4.8839 41 1 0.1290 -0.7719 -4.4706 42 1 1.4527 -3.5802 -4.0279 43 1 -0.2704 -3.2730 -4.6091 44 1 0.6312 -2.0187 -6.6217 45 1 2.3547 -2.3253 -6.0416 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336966843.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:51 Heat of formation + Delta-G solvation = -11.144155 kcal Electronic energy + Delta-G solvation = -27001.863345 eV Core-core repulsion = 23147.223184 eV Total energy + Delta-G solvation = -3854.640161 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.09604 -39.22540 -38.20762 -36.83557 -35.93423 -34.55769 -33.32152 -32.43442 -30.37576 -28.49832 -27.58177 -25.67612 -25.45541 -23.99777 -22.60885 -21.63463 -20.38815 -19.89045 -18.13261 -17.90105 -17.71080 -17.00778 -16.40526 -16.11979 -15.69041 -15.34528 -15.10835 -14.95491 -14.80661 -14.35450 -14.16150 -13.84981 -13.65236 -13.45117 -13.26622 -13.08838 -12.96883 -12.90284 -12.61054 -12.59510 -12.45551 -12.03201 -11.95839 -11.92373 -11.87238 -11.50340 -11.05159 -11.03917 -10.86923 -10.77888 -10.49712 -10.22710 -9.83506 -9.46739 -9.19057 -9.07094 -8.94240 -8.25738 -6.51052 -6.22271 -3.93006 1.98105 2.01466 2.45921 2.67632 2.98298 3.06170 3.23589 3.26652 3.29268 3.36340 3.41345 3.68266 3.91758 4.20159 4.25771 4.30669 4.42016 4.42571 4.56684 4.62330 4.75986 4.78283 4.91083 4.95260 5.08191 5.08832 5.12982 5.16608 5.24105 5.30928 5.41673 5.49009 5.52820 5.58550 5.69506 5.78148 5.79683 5.86731 5.99581 6.13033 6.53825 6.73612 7.21194 7.55372 7.58952 7.64386 8.34614 8.56328 9.23202 10.85056 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011197 B = 0.002854 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.020192 B = 9808.613188 C =11639.453326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.011 4.011 3 H 0.143 0.857 4 C 0.219 3.781 5 N -0.408 5.408 6 C 0.524 3.476 7 O -0.523 6.523 8 N -0.600 5.600 9 C 0.064 3.936 10 C 0.160 3.840 11 H 0.111 0.889 12 C 0.115 3.885 13 N -0.737 5.737 14 C 0.533 3.467 15 O -0.516 6.516 16 C -0.154 4.154 17 S -0.058 6.058 18 C -0.537 4.537 19 H 0.072 0.928 20 C 0.075 3.925 21 N -0.868 5.868 22 Si 0.918 3.082 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C -0.164 4.164 27 C -0.173 4.173 28 C -0.169 4.169 29 H 0.093 0.907 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.397 0.603 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.269 0.731 41 H 0.112 0.888 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.099 0.901 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.902 -11.009 3.756 27.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.035 4.035 3 H 0.160 0.840 4 C -0.100 4.100 5 N -0.083 5.083 6 C 0.310 3.690 7 O -0.398 6.398 8 N -0.333 5.333 9 C -0.078 4.078 10 C 0.057 3.943 11 H 0.129 0.871 12 C -0.010 4.010 13 N -0.391 5.391 14 C 0.319 3.681 15 O -0.391 6.391 16 C -0.305 4.305 17 S 0.169 5.831 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.744 3.256 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.184 4.184 27 C -0.210 4.210 28 C -0.206 4.206 29 H 0.111 0.889 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.230 0.770 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.079 0.921 41 H 0.130 0.870 42 H 0.115 0.885 43 H 0.113 0.887 44 H 0.118 0.882 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -24.006 -11.666 3.138 26.875 hybrid contribution 0.764 0.141 2.220 2.352 sum -23.243 -11.525 5.358 26.491 Atomic orbital electron populations 1.22075 0.89534 1.04563 1.05169 1.18821 0.98963 1.00304 0.85461 0.83962 1.28028 0.93949 0.94035 0.94015 1.81216 1.07396 1.07758 1.11929 1.20063 0.80408 0.84565 0.83990 1.90808 1.37214 1.25778 1.86020 1.47690 1.51473 1.29165 1.04946 1.22133 0.94462 0.86779 1.04469 1.20964 0.93730 0.95950 0.83705 0.87137 1.21578 0.88808 0.96943 0.93676 1.45943 1.30912 1.47545 1.14736 1.20293 0.81769 0.77897 0.88117 1.90705 1.72766 1.58594 1.16993 1.23534 0.99288 1.04372 1.03270 1.85353 1.30962 1.51300 1.15529 1.22833 1.15771 1.31541 0.98347 0.90993 1.24978 0.97220 0.95228 0.96054 1.70004 1.32868 1.29508 1.17933 0.86237 0.80158 0.78513 0.80678 1.19924 1.20793 1.19927 1.22439 0.99848 0.95580 1.00527 1.23044 1.02443 0.93458 1.02042 1.23003 1.02836 1.03275 0.91530 0.88886 0.91065 0.90154 0.91474 0.90124 0.89886 0.90888 0.90210 0.76952 0.89346 0.89280 0.92122 0.86970 0.88509 0.88674 0.88228 0.88191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.42 8.78 37.16 0.33 -0.09 16 2 C -0.01 -0.06 2.30 -94.56 -0.22 -0.28 16 3 H 0.14 0.41 7.40 -51.93 -0.38 0.02 16 4 C 0.22 2.20 13.88 -20.76 -0.29 1.91 16 5 N -0.41 -5.43 18.54 42.16 0.78 -4.65 16 6 C 0.52 4.30 6.76 -10.99 -0.07 4.22 16 7 O -0.52 -6.64 15.36 5.56 0.09 -6.55 16 8 N -0.60 -3.75 2.24 -173.94 -0.39 -4.14 16 9 C 0.06 0.21 7.77 59.84 0.47 0.67 16 10 C 0.16 1.23 2.42 -67.93 -0.16 1.06 16 11 H 0.11 1.07 6.66 -51.93 -0.35 0.73 16 12 C 0.12 1.15 4.69 -4.04 -0.02 1.14 16 13 N -0.74 -9.35 5.39 -60.29 -0.32 -9.67 16 14 C 0.53 9.54 7.85 -10.98 -0.09 9.45 16 15 O -0.52 -11.16 15.86 5.56 0.09 -11.08 16 16 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 17 S -0.06 -1.55 20.57 -107.50 -2.21 -3.77 16 18 C -0.54 -15.25 9.50 30.94 0.29 -14.96 16 19 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 20 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 21 N -0.87 -26.03 13.22 55.49 0.73 -25.30 16 22 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 26 C -0.16 -0.98 5.21 -90.62 -0.47 -1.45 16 27 C -0.17 -1.07 10.18 -26.69 -0.27 -1.34 16 28 C -0.17 -1.03 9.80 -26.70 -0.26 -1.30 16 29 H 0.09 0.06 4.53 -51.93 -0.24 -0.17 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.07 0.08 6.88 -51.93 -0.36 -0.28 16 33 H 0.08 0.13 6.01 -51.93 -0.31 -0.19 16 34 H 0.08 0.35 6.53 -51.93 -0.34 0.01 16 35 H 0.07 0.72 6.88 -51.93 -0.36 0.36 16 36 H 0.08 0.88 7.48 -51.93 -0.39 0.49 16 37 H 0.40 4.57 7.87 -40.82 -0.32 4.24 16 38 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 39 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 40 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.11 0.53 7.43 -51.93 -0.39 0.14 16 42 H 0.10 0.69 8.05 -51.93 -0.42 0.27 16 43 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.10 0.68 7.67 -51.93 -0.40 0.28 16 LS Contribution 391.20 15.07 5.90 5.90 Total: -1.00 -38.27 391.20 -7.33 -45.60 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -6.32 Total: -0.94 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -0.64 Total: -1.79 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: 0.80 Total: -43.76 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: 0.17 Total: -17.63 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -38.27 -7.33 -45.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336966843.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.456 kcal (2) G-P(sol) polarization free energy of solvation -38.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds