Wall clock time and date at job start Sat Apr 11 2020 05:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47369 * 2 1 4 4 C 1.47205 * 109.47146 * 120.00231 * 2 1 3 5 5 N 2.60808 * 109.46919 * 120.00141 * 2 1 3 6 6 C 1.50703 * 109.47197 * 239.99649 * 2 1 3 7 7 O 1.21279 * 120.00470 * 240.00522 * 6 2 1 8 8 N 1.34772 * 119.99459 * 60.00101 * 6 2 1 9 9 C 1.46491 * 120.00479 * 0.02562 * 8 6 2 10 10 C 1.46510 * 119.99592 * 180.02562 * 8 6 2 11 11 H 1.08994 * 109.47163 * 359.97438 * 10 8 6 12 12 C 1.52998 * 109.46996 * 240.00102 * 10 8 6 13 13 N 1.46506 * 109.47237 * 54.99974 * 12 10 8 14 14 C 1.34773 * 119.99969 * 179.72043 * 13 12 10 15 15 O 1.21281 * 120.00220 * 0.02562 * 14 13 12 16 16 C 1.50706 * 120.00080 * 180.02562 * 14 13 12 17 17 S 1.80989 * 109.47203 * 180.02562 * 16 14 13 18 18 C 1.76206 * 100.00010 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99621 * 359.97438 * 18 17 16 20 20 C 1.38794 * 119.99924 * 180.02562 * 18 17 16 21 21 N 1.31628 * 120.00193 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99992 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.46908 * 59.99727 * 22 20 18 24 24 H 1.48496 * 109.47426 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46953 * 300.00039 * 22 20 18 26 26 C 1.52999 * 109.46806 * 120.00452 * 10 8 6 27 27 C 1.53003 * 117.49383 * 248.74153 * 26 10 8 28 28 C 1.53000 * 117.49553 * 180.08830 * 26 10 8 29 29 H 1.09003 * 109.47056 * 60.00102 * 1 2 3 30 30 H 1.09000 * 109.47369 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47097 * 300.00357 * 1 2 3 32 32 H 1.08997 * 109.47344 * 269.99952 * 9 8 6 33 33 H 1.08998 * 109.47293 * 29.99794 * 9 8 6 34 34 H 1.09001 * 109.47597 * 149.99922 * 9 8 6 35 35 H 1.09001 * 109.47671 * 295.00315 * 12 10 8 36 36 H 1.08998 * 109.47454 * 175.00312 * 12 10 8 37 37 H 0.97005 * 119.99811 * 0.02562 * 13 12 10 38 38 H 1.09004 * 109.46762 * 300.00389 * 16 14 13 39 39 H 1.08998 * 109.46924 * 59.99727 * 16 14 13 40 40 H 0.97004 * 119.99966 * 180.02562 * 21 20 18 41 41 H 1.08996 * 115.55273 * 34.41683 * 26 10 8 42 42 H 1.08998 * 117.49900 * 0.02562 * 27 26 10 43 43 H 1.09000 * 117.49401 * 145.02210 * 27 26 10 44 44 H 1.08999 * 117.49742 * 214.97684 * 28 26 10 45 45 H 1.08999 * 117.49821 * 359.97103 * 28 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0207 -0.6940 1.2019 5 7 2.3992 -1.2295 2.1295 6 6 2.0323 -0.7105 -1.2304 7 8 2.7295 -1.6966 -1.1192 8 7 1.7067 -0.2500 -2.4545 9 6 0.8650 0.9414 -2.5890 10 6 2.1946 -0.9410 -3.6507 11 1 2.8002 -1.7973 -3.3540 12 6 3.0449 0.0202 -4.4838 13 7 4.1159 0.5723 -3.6504 14 6 4.9982 1.4442 -4.1774 15 8 4.9054 1.7721 -5.3414 16 6 6.1003 2.0118 -3.3204 17 16 7.1105 3.1432 -4.3078 18 6 8.2852 3.6435 -3.0935 19 1 8.2248 3.2503 -2.0895 20 6 9.2875 4.5438 -3.4271 21 7 9.3609 5.0235 -4.6507 22 14 10.5325 5.0748 -2.1396 23 1 11.2696 3.8848 -1.6433 24 1 11.4916 6.0339 -2.7442 25 1 9.8264 5.7272 -1.0077 26 6 1.0042 -1.4214 -4.4833 27 6 0.7634 -2.9300 -4.5666 28 6 1.3073 -2.1733 -5.7809 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.1831 0.6439 -2.6221 33 1 1.0288 1.6002 -1.7362 34 1 1.1228 1.4666 -3.5086 35 1 2.4184 0.8313 -4.8547 36 1 3.4804 -0.5169 -5.3263 37 1 4.1926 0.3070 -2.7205 38 1 5.6650 2.5529 -2.4802 39 1 6.7238 1.2001 -2.9458 40 1 10.0616 5.6524 -4.8839 41 1 0.1290 -0.7719 -4.4706 42 1 1.4527 -3.5802 -4.0279 43 1 -0.2704 -3.2730 -4.6091 44 1 0.6312 -2.0187 -6.6217 45 1 2.3547 -2.3253 -6.0416 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336966843.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:50 Heat of formation + Delta-G solvation = -38.015358 kcal Electronic energy + Delta-G solvation = -27003.028568 eV Core-core repulsion = 23147.223184 eV Total energy + Delta-G solvation = -3855.805384 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.75290 -40.49209 -38.94186 -37.62418 -36.55514 -35.56146 -34.58606 -34.00221 -31.59845 -29.54415 -28.02682 -27.65356 -26.05378 -24.76415 -23.14209 -22.26237 -21.62796 -20.59988 -19.77395 -18.69095 -18.37657 -17.89022 -17.52061 -17.21942 -16.87831 -16.52956 -16.36651 -15.88988 -15.76636 -15.47457 -14.96397 -14.91818 -14.66166 -14.41843 -14.27376 -14.10375 -13.83779 -13.75436 -13.39259 -13.24549 -13.17971 -13.16853 -13.06539 -12.87680 -12.64306 -12.47566 -12.45291 -12.28769 -12.12774 -11.75248 -11.36358 -11.13424 -11.10991 -10.90897 -10.83664 -10.28847 -10.13590 -9.75110 -8.65751 -8.34876 -6.12341 1.26017 1.34052 1.40257 1.42955 1.45923 1.55846 1.60667 1.71447 2.03530 2.24555 2.28709 2.77634 2.87742 2.99160 3.30901 3.42767 3.66025 3.78512 3.94979 3.98237 4.08163 4.10262 4.10774 4.26107 4.27957 4.29419 4.44894 4.49759 4.64109 4.74497 4.81284 4.84754 4.86082 4.91455 5.07761 5.10602 5.23484 5.29318 5.33138 5.34927 5.41505 5.48767 6.19326 6.19501 6.40734 6.49431 6.96837 7.06695 7.19773 8.73914 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011197 B = 0.002854 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.020192 B = 9808.613188 C =11639.453326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.007 4.007 3 H 0.180 0.820 4 C 0.241 3.759 5 N -0.477 5.477 6 C 0.522 3.478 7 O -0.577 6.577 8 N -0.591 5.591 9 C 0.049 3.951 10 C 0.169 3.831 11 H 0.088 0.912 12 C 0.116 3.884 13 N -0.712 5.712 14 C 0.538 3.462 15 O -0.558 6.558 16 C -0.133 4.133 17 S -0.140 6.140 18 C -0.550 4.550 19 H 0.080 0.920 20 C 0.017 3.983 21 N -0.909 5.909 22 Si 0.995 3.005 23 H -0.266 1.266 24 H -0.277 1.277 25 H -0.261 1.261 26 C -0.157 4.157 27 C -0.174 4.174 28 C -0.173 4.173 29 H 0.121 0.879 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.406 0.594 38 H 0.111 0.889 39 H 0.098 0.902 40 H 0.272 0.728 41 H 0.136 0.864 42 H 0.080 0.920 43 H 0.109 0.891 44 H 0.112 0.888 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.074 -10.220 4.932 29.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.031 4.031 3 H 0.197 0.803 4 C -0.078 4.078 5 N -0.153 5.153 6 C 0.309 3.691 7 O -0.456 6.456 8 N -0.323 5.323 9 C -0.092 4.092 10 C 0.065 3.935 11 H 0.106 0.894 12 C -0.009 4.009 13 N -0.365 5.365 14 C 0.324 3.676 15 O -0.436 6.436 16 C -0.284 4.284 17 S 0.087 5.913 18 C -0.698 4.698 19 H 0.098 0.902 20 C -0.188 4.188 21 N -0.545 5.545 22 Si 0.816 3.184 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.185 1.185 26 C -0.176 4.176 27 C -0.211 4.211 28 C -0.211 4.211 29 H 0.139 0.861 30 H 0.078 0.922 31 H 0.113 0.887 32 H 0.116 0.884 33 H 0.123 0.877 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.241 0.759 38 H 0.129 0.871 39 H 0.117 0.883 40 H 0.081 0.919 41 H 0.154 0.846 42 H 0.099 0.901 43 H 0.128 0.872 44 H 0.131 0.869 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -26.239 -10.885 4.330 28.735 hybrid contribution 1.330 -0.186 1.804 2.249 sum -24.909 -11.071 6.134 27.940 Atomic orbital electron populations 1.22156 0.86773 1.04576 1.07315 1.19187 1.00923 1.00883 0.82102 0.80298 1.28896 0.92197 0.92652 0.94019 1.81223 1.09730 1.09921 1.14390 1.20489 0.79607 0.83973 0.85007 1.90801 1.39789 1.28273 1.86775 1.47727 1.51082 1.29671 1.03803 1.22536 0.95526 0.85734 1.05396 1.20717 0.94023 0.94576 0.84198 0.89440 1.21751 0.88141 0.97523 0.93454 1.45705 1.30060 1.45470 1.15280 1.19913 0.81990 0.78529 0.87178 1.90697 1.73897 1.60475 1.18509 1.23388 0.99089 1.03123 1.02842 1.85467 1.33004 1.53992 1.18819 1.23175 1.16207 1.31803 0.98618 0.90230 1.26063 0.99352 0.95072 0.98347 1.70160 1.33865 1.30274 1.20242 0.85061 0.77251 0.78279 0.77771 1.19087 1.20226 1.18534 1.22443 0.99596 0.95763 0.99781 1.23043 1.02863 0.93346 1.01814 1.23045 1.02510 1.03467 0.92063 0.86056 0.92188 0.88662 0.88406 0.87711 0.90383 0.89781 0.91249 0.75884 0.87107 0.88324 0.91930 0.84595 0.90103 0.87221 0.86926 0.89437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.22 8.78 71.98 0.63 0.41 16 2 C -0.01 -0.06 2.30 -13.34 -0.03 -0.09 16 3 H 0.18 0.19 7.40 -2.39 -0.02 0.18 16 4 C 0.24 4.58 13.88 89.44 1.24 5.83 16 5 N -0.48 -12.83 18.54 20.01 0.37 -12.46 16 6 C 0.52 7.51 6.76 87.66 0.59 8.11 16 7 O -0.58 -14.54 15.36 -3.03 -0.05 -14.58 16 8 N -0.59 -5.74 2.24 -822.61 -1.85 -7.58 16 9 C 0.05 0.09 7.77 127.77 0.99 1.09 16 10 C 0.17 2.33 2.42 44.99 0.11 2.44 16 11 H 0.09 1.70 6.66 -2.39 -0.02 1.68 16 12 C 0.12 2.17 4.69 86.38 0.40 2.57 16 13 N -0.71 -17.09 5.39 -463.05 -2.49 -19.59 16 14 C 0.54 18.91 7.85 87.66 0.69 19.60 16 15 O -0.56 -24.29 15.86 -3.03 -0.05 -24.34 16 16 C -0.13 -5.22 6.16 71.24 0.44 -4.78 16 17 S -0.14 -7.65 20.57 -56.49 -1.16 -8.81 16 18 C -0.55 -31.36 9.50 67.95 0.65 -30.71 16 19 H 0.08 4.24 7.80 -2.91 -0.02 4.22 16 20 C 0.02 0.95 5.49 84.86 0.47 1.42 16 21 N -0.91 -55.38 13.22 21.65 0.29 -55.10 16 22 Si 0.99 43.59 29.55 68.60 2.03 45.62 16 23 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 24 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 25 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 26 C -0.16 -1.51 5.21 -10.79 -0.06 -1.57 16 27 C -0.17 -1.90 10.18 30.62 0.31 -1.59 16 28 C -0.17 -1.90 9.80 30.62 0.30 -1.60 16 29 H 0.12 -0.50 4.53 -2.39 -0.01 -0.51 16 30 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.09 -0.06 8.14 -2.38 -0.02 -0.08 16 32 H 0.10 -0.33 6.88 -2.39 -0.02 -0.35 16 33 H 0.10 -0.26 6.01 -2.39 -0.01 -0.27 16 34 H 0.08 0.32 6.53 -2.39 -0.02 0.31 16 35 H 0.08 1.47 6.88 -2.39 -0.02 1.46 16 36 H 0.07 1.51 7.48 -2.39 -0.02 1.49 16 37 H 0.41 8.62 7.87 -92.70 -0.73 7.89 16 38 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 39 H 0.10 3.68 8.14 -2.40 -0.02 3.66 16 40 H 0.27 15.39 8.31 -92.71 -0.77 14.61 16 41 H 0.14 0.71 7.43 -2.39 -0.02 0.70 16 42 H 0.08 1.16 8.05 -2.39 -0.02 1.14 16 43 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.09 1.18 7.67 -2.39 -0.02 1.16 16 Total: -1.00 -88.39 391.20 4.12 -84.26 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 0.30 Total: 11.47 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: 6.74 Total: 1.11 kcal Atomic # 7 Polarization: -91.05 SS G_CDS: -3.68 Total: -94.73 kcal Atomic # 8 Polarization: -38.83 SS G_CDS: -0.09 Total: -38.92 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: -7.65 SS G_CDS: -1.16 Total: -8.81 kcal Total: -88.39 4.12 -84.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336966843.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.248 kcal (2) G-P(sol) polarization free energy of solvation -88.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds