Wall clock time and date at job start Sat Apr 11 2020 05:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47469 * 2 1 4 4 C 1.47205 * 109.47008 * 119.99998 * 2 1 3 5 5 N 2.60804 * 109.47041 * 120.00031 * 2 1 3 6 6 C 1.50702 * 109.46881 * 239.99730 * 2 1 3 7 7 O 1.21283 * 119.99988 * 250.90690 * 6 2 1 8 8 N 1.34779 * 120.00090 * 70.90706 * 6 2 1 9 9 C 1.46497 * 120.00126 * 174.97892 * 8 6 2 10 10 C 1.46506 * 119.99684 * 355.25888 * 8 6 2 11 11 H 1.08998 * 109.47327 * 0.03752 * 10 8 6 12 12 C 1.53004 * 109.46744 * 120.03782 * 10 8 6 13 13 N 1.46498 * 109.47391 * 304.99863 * 12 10 8 14 14 C 1.34773 * 120.00111 * 180.02562 * 13 12 10 15 15 O 1.21284 * 119.99924 * 359.97438 * 14 13 12 16 16 C 1.50693 * 120.00167 * 180.02562 * 14 13 12 17 17 S 1.80999 * 109.47199 * 179.97438 * 16 14 13 18 18 C 1.76200 * 100.00349 * 179.97438 * 17 16 14 19 19 H 1.08008 * 119.99490 * 359.97438 * 18 17 16 20 20 C 1.38797 * 120.00601 * 179.97438 * 18 17 16 21 21 N 1.31631 * 119.99690 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00427 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46733 * 359.97438 * 22 20 18 24 24 H 1.48491 * 109.47121 * 120.00094 * 22 20 18 25 25 H 1.48495 * 109.47089 * 240.00412 * 22 20 18 26 26 C 1.52992 * 109.46829 * 240.03706 * 10 8 6 27 27 C 1.53002 * 117.50170 * 248.74845 * 26 10 8 28 28 C 1.53004 * 117.49942 * 180.09004 * 26 10 8 29 29 H 1.09004 * 109.46861 * 293.93801 * 1 2 3 30 30 H 1.08998 * 109.47222 * 53.93212 * 1 2 3 31 31 H 1.08999 * 109.47415 * 173.93547 * 1 2 3 32 32 H 1.09007 * 109.46492 * 84.75438 * 9 8 6 33 33 H 1.08996 * 109.47114 * 204.75227 * 9 8 6 34 34 H 1.08995 * 109.47033 * 324.75535 * 9 8 6 35 35 H 1.08999 * 109.46901 * 65.00390 * 12 10 8 36 36 H 1.09002 * 109.46569 * 184.99801 * 12 10 8 37 37 H 0.96998 * 120.00017 * 359.97438 * 13 12 10 38 38 H 1.09007 * 109.47062 * 299.99356 * 16 14 13 39 39 H 1.08994 * 109.47490 * 59.99339 * 16 14 13 40 40 H 0.96995 * 119.99918 * 179.97438 * 21 20 18 41 41 H 1.09002 * 115.55227 * 34.41836 * 26 10 8 42 42 H 1.08997 * 117.49450 * 0.02562 * 27 26 10 43 43 H 1.08994 * 117.50359 * 145.02012 * 27 26 10 44 44 H 1.09000 * 117.49833 * 214.98477 * 28 26 10 45 45 H 1.09003 * 117.49655 * 359.97263 * 28 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0207 -0.6939 1.2019 5 7 2.3993 -1.2295 2.1295 6 6 2.0323 -0.7105 -1.2305 7 8 2.5583 -1.7987 -1.1301 8 7 1.8969 -0.1366 -2.4424 9 6 2.4820 -0.7745 -3.6244 10 6 1.1700 1.1282 -2.5769 11 1 0.8151 1.4492 -1.5976 12 6 2.1032 2.1937 -3.1556 13 7 3.3039 2.2958 -2.3226 14 6 4.2729 3.1764 -2.6420 15 8 4.1509 3.8841 -3.6194 16 6 5.5083 3.2810 -1.7854 17 16 6.6121 4.5416 -2.4700 18 6 7.9331 4.4558 -1.3071 19 1 7.8822 3.7602 -0.4824 20 6 9.0391 5.2819 -1.4509 21 7 9.1010 6.1299 -2.4557 22 14 10.4392 5.1914 -0.2177 23 1 10.1275 4.1664 0.8106 24 1 11.6945 4.8230 -0.9201 25 1 10.6082 6.5134 0.4373 26 6 -0.0241 0.9330 -3.5133 27 6 0.0259 1.6268 -4.8760 28 6 -0.9141 2.1474 -3.7858 29 1 -0.3633 0.4170 0.9393 30 1 -0.3633 0.6050 -0.8307 31 1 -0.3634 -1.0219 -0.1086 32 1 1.7909 -1.5226 -4.0129 33 1 2.6689 -0.0206 -4.3891 34 1 3.4212 -1.2549 -3.3505 35 1 2.3875 1.9152 -4.1703 36 1 1.5901 3.1553 -3.1730 37 1 3.4013 1.7301 -1.5407 38 1 5.2242 3.5589 -0.7704 39 1 6.0214 2.3196 -1.7688 40 1 9.8737 6.7076 -2.5560 41 1 -0.5063 -0.0432 -3.4630 42 1 0.9098 2.2220 -5.1056 43 1 -0.4236 1.1073 -5.7222 44 1 -1.9817 1.9700 -3.9151 45 1 -0.6491 3.0852 -3.2976 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336966844.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:54 Heat of formation + Delta-G solvation = -6.439111 kcal Electronic energy + Delta-G solvation = -27315.467493 eV Core-core repulsion = 23461.031357 eV Total energy + Delta-G solvation = -3854.436135 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.23223 -39.38966 -38.43020 -36.93471 -35.68178 -34.13501 -33.79696 -32.45299 -30.36160 -28.55618 -27.53107 -25.75941 -25.46252 -24.35413 -22.82167 -21.35231 -20.59041 -20.04888 -18.20018 -18.01463 -17.75068 -16.78781 -16.58925 -15.95338 -15.71832 -15.40232 -15.23899 -14.95189 -14.82146 -14.56457 -14.29258 -13.87143 -13.70740 -13.47944 -13.22516 -13.12410 -12.96581 -12.76222 -12.61731 -12.58621 -12.40368 -12.09965 -12.07770 -11.99097 -11.88417 -11.63054 -11.08327 -11.04624 -10.91641 -10.77760 -10.54476 -10.27537 -9.83993 -9.55259 -9.22163 -9.11779 -9.05389 -8.28216 -6.53693 -6.24551 -3.95335 1.96120 2.03303 2.45094 2.63530 2.90700 2.97305 3.20637 3.24896 3.28834 3.32187 3.34830 3.59648 3.79833 4.15705 4.17935 4.18621 4.27816 4.37261 4.41211 4.49614 4.61408 4.87423 4.96762 4.98016 5.03625 5.11145 5.11412 5.20256 5.27098 5.34699 5.39305 5.44637 5.49563 5.58050 5.65245 5.67004 5.72495 5.82153 5.92716 6.08430 6.40504 6.73683 7.20482 7.49118 7.55654 7.58164 8.33152 8.46358 9.21501 10.82901 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011572 B = 0.002980 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.081568 B = 9392.179583 C =11041.601173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.016 4.016 3 H 0.136 0.864 4 C 0.218 3.782 5 N -0.404 5.404 6 C 0.522 3.478 7 O -0.517 6.517 8 N -0.599 5.599 9 C 0.088 3.912 10 C 0.144 3.856 11 H 0.112 0.888 12 C 0.104 3.896 13 N -0.739 5.739 14 C 0.535 3.465 15 O -0.513 6.513 16 C -0.156 4.156 17 S -0.058 6.058 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.918 3.082 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.280 1.280 26 C -0.168 4.168 27 C -0.181 4.181 28 C -0.169 4.169 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.393 0.607 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.268 0.732 41 H 0.116 0.884 42 H 0.108 0.892 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.512 -10.951 -1.488 26.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.041 4.041 3 H 0.154 0.846 4 C -0.101 4.101 5 N -0.078 5.078 6 C 0.307 3.693 7 O -0.392 6.392 8 N -0.332 5.332 9 C -0.054 4.054 10 C 0.040 3.960 11 H 0.130 0.870 12 C -0.021 4.021 13 N -0.394 5.394 14 C 0.321 3.679 15 O -0.387 6.387 16 C -0.306 4.306 17 S 0.169 5.831 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.744 3.256 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.205 1.205 26 C -0.188 4.188 27 C -0.217 4.217 28 C -0.207 4.207 29 H 0.102 0.898 30 H 0.109 0.891 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.226 0.774 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.134 0.866 42 H 0.126 0.874 43 H 0.115 0.885 44 H 0.117 0.883 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -23.730 -11.037 -1.779 26.231 hybrid contribution 0.971 -0.890 1.808 2.237 sum -22.759 -11.927 0.029 25.695 Atomic orbital electron populations 1.22008 0.89199 1.04751 1.04990 1.18893 0.99264 1.00017 0.85925 0.84643 1.27942 0.94135 0.94077 0.93985 1.81222 1.07235 1.07636 1.11755 1.20005 0.79476 0.85940 0.83861 1.90810 1.42684 1.19933 1.85783 1.47764 1.54640 1.23428 1.07390 1.21677 0.98994 0.98108 0.86636 1.21288 0.90699 0.83176 1.00840 0.87048 1.21872 0.86037 0.98462 0.95745 1.45947 1.20039 1.42273 1.31126 1.20300 0.83485 0.78722 0.85387 1.90712 1.78524 1.42176 1.27282 1.23545 0.97733 1.06884 1.02457 1.85358 1.15670 1.44250 1.37863 1.22909 1.05274 1.26312 1.13895 0.90870 1.24983 0.97959 0.94480 0.96086 1.70020 1.29916 1.21448 1.28887 0.86122 0.80901 0.78151 0.80389 1.19593 1.20534 1.20534 1.22538 0.98819 0.98592 0.98839 1.23249 1.02753 1.03652 0.92092 1.23046 0.97339 0.97268 1.03008 0.89841 0.89141 0.90668 0.92289 0.90308 0.90561 0.90231 0.89840 0.77376 0.89197 0.89231 0.92215 0.86647 0.87422 0.88470 0.88303 0.88092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.50 8.75 37.16 0.33 -0.17 16 2 C -0.02 -0.10 2.25 -94.56 -0.21 -0.31 16 3 H 0.14 0.50 6.92 -51.93 -0.36 0.14 16 4 C 0.22 2.27 13.90 -20.76 -0.29 1.98 16 5 N -0.40 -5.50 18.54 42.15 0.78 -4.72 16 6 C 0.52 4.54 6.64 -10.98 -0.07 4.46 16 7 O -0.52 -6.87 15.79 5.56 0.09 -6.78 16 8 N -0.60 -4.04 2.24 -173.93 -0.39 -4.43 16 9 C 0.09 0.64 9.68 59.85 0.58 1.22 16 10 C 0.14 0.71 1.78 -67.93 -0.12 0.59 16 11 H 0.11 0.33 4.09 -51.93 -0.21 0.12 16 12 C 0.10 0.83 3.56 -4.04 -0.01 0.82 16 13 N -0.74 -8.05 5.39 -60.30 -0.32 -8.38 16 14 C 0.53 8.95 7.85 -10.99 -0.09 8.87 16 15 O -0.51 -10.53 15.86 5.55 0.09 -10.45 16 16 C -0.16 -2.99 6.16 36.00 0.22 -2.77 16 17 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 18 C -0.54 -15.09 9.50 30.94 0.29 -14.80 16 19 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -25.84 13.22 55.49 0.73 -25.11 16 22 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 C -0.17 -0.65 5.17 -90.62 -0.47 -1.12 16 27 C -0.18 -0.84 9.59 -26.69 -0.26 -1.10 16 28 C -0.17 -0.62 9.94 -26.69 -0.27 -0.88 16 29 H 0.08 0.20 8.13 -51.93 -0.42 -0.23 16 30 H 0.09 0.14 5.36 -51.93 -0.28 -0.14 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.54 6.52 -51.93 -0.34 0.20 16 34 H 0.08 0.70 7.66 -51.93 -0.40 0.30 16 35 H 0.08 0.72 5.32 -51.93 -0.28 0.44 16 36 H 0.08 0.68 7.44 -51.93 -0.39 0.30 16 37 H 0.39 3.55 7.37 -40.82 -0.30 3.25 16 38 H 0.09 1.59 8.14 -51.91 -0.42 1.16 16 39 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 40 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.12 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.11 0.64 5.80 -51.93 -0.30 0.34 16 43 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.10 0.37 7.66 -51.93 -0.40 -0.03 16 LS Contribution 388.13 15.07 5.85 5.85 Total: -1.00 -37.95 388.13 -7.05 -45.00 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -6.17 Total: -2.38 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -0.46 Total: -1.22 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: 0.80 Total: -42.64 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: 0.18 Total: -17.22 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.95 -7.05 -45.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336966844.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.557 kcal (2) G-P(sol) polarization free energy of solvation -37.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds