Wall clock time and date at job start Sat Apr 11 2020 05:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47469 * 2 1 4 4 C 1.47205 * 109.47008 * 119.99998 * 2 1 3 5 5 N 2.60804 * 109.47041 * 120.00031 * 2 1 3 6 6 C 1.50702 * 109.46881 * 239.99730 * 2 1 3 7 7 O 1.21283 * 119.99988 * 250.90690 * 6 2 1 8 8 N 1.34779 * 120.00090 * 70.90706 * 6 2 1 9 9 C 1.46497 * 120.00126 * 174.97892 * 8 6 2 10 10 C 1.46506 * 119.99684 * 355.25888 * 8 6 2 11 11 H 1.08998 * 109.47327 * 0.03752 * 10 8 6 12 12 C 1.53004 * 109.46744 * 120.03782 * 10 8 6 13 13 N 1.46498 * 109.47391 * 304.99863 * 12 10 8 14 14 C 1.34773 * 120.00111 * 180.02562 * 13 12 10 15 15 O 1.21284 * 119.99924 * 359.97438 * 14 13 12 16 16 C 1.50693 * 120.00167 * 180.02562 * 14 13 12 17 17 S 1.80999 * 109.47199 * 179.97438 * 16 14 13 18 18 C 1.76200 * 100.00349 * 179.97438 * 17 16 14 19 19 H 1.08008 * 119.99490 * 359.97438 * 18 17 16 20 20 C 1.38797 * 120.00601 * 179.97438 * 18 17 16 21 21 N 1.31631 * 119.99690 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00427 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46733 * 359.97438 * 22 20 18 24 24 H 1.48491 * 109.47121 * 120.00094 * 22 20 18 25 25 H 1.48495 * 109.47089 * 240.00412 * 22 20 18 26 26 C 1.52992 * 109.46829 * 240.03706 * 10 8 6 27 27 C 1.53002 * 117.50170 * 248.74845 * 26 10 8 28 28 C 1.53004 * 117.49942 * 180.09004 * 26 10 8 29 29 H 1.09004 * 109.46861 * 293.93801 * 1 2 3 30 30 H 1.08998 * 109.47222 * 53.93212 * 1 2 3 31 31 H 1.08999 * 109.47415 * 173.93547 * 1 2 3 32 32 H 1.09007 * 109.46492 * 84.75438 * 9 8 6 33 33 H 1.08996 * 109.47114 * 204.75227 * 9 8 6 34 34 H 1.08995 * 109.47033 * 324.75535 * 9 8 6 35 35 H 1.08999 * 109.46901 * 65.00390 * 12 10 8 36 36 H 1.09002 * 109.46569 * 184.99801 * 12 10 8 37 37 H 0.96998 * 120.00017 * 359.97438 * 13 12 10 38 38 H 1.09007 * 109.47062 * 299.99356 * 16 14 13 39 39 H 1.08994 * 109.47490 * 59.99339 * 16 14 13 40 40 H 0.96995 * 119.99918 * 179.97438 * 21 20 18 41 41 H 1.09002 * 115.55227 * 34.41836 * 26 10 8 42 42 H 1.08997 * 117.49450 * 0.02562 * 27 26 10 43 43 H 1.08994 * 117.50359 * 145.02012 * 27 26 10 44 44 H 1.09000 * 117.49833 * 214.98477 * 28 26 10 45 45 H 1.09003 * 117.49655 * 359.97263 * 28 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0207 -0.6939 1.2019 5 7 2.3993 -1.2295 2.1295 6 6 2.0323 -0.7105 -1.2305 7 8 2.5583 -1.7987 -1.1301 8 7 1.8969 -0.1366 -2.4424 9 6 2.4820 -0.7745 -3.6244 10 6 1.1700 1.1282 -2.5769 11 1 0.8151 1.4492 -1.5976 12 6 2.1032 2.1937 -3.1556 13 7 3.3039 2.2958 -2.3226 14 6 4.2729 3.1764 -2.6420 15 8 4.1509 3.8841 -3.6194 16 6 5.5083 3.2810 -1.7854 17 16 6.6121 4.5416 -2.4700 18 6 7.9331 4.4558 -1.3071 19 1 7.8822 3.7602 -0.4824 20 6 9.0391 5.2819 -1.4509 21 7 9.1010 6.1299 -2.4557 22 14 10.4392 5.1914 -0.2177 23 1 10.1275 4.1664 0.8106 24 1 11.6945 4.8230 -0.9201 25 1 10.6082 6.5134 0.4373 26 6 -0.0241 0.9330 -3.5133 27 6 0.0259 1.6268 -4.8760 28 6 -0.9141 2.1474 -3.7858 29 1 -0.3633 0.4170 0.9393 30 1 -0.3633 0.6050 -0.8307 31 1 -0.3634 -1.0219 -0.1086 32 1 1.7909 -1.5226 -4.0129 33 1 2.6689 -0.0206 -4.3891 34 1 3.4212 -1.2549 -3.3505 35 1 2.3875 1.9152 -4.1703 36 1 1.5901 3.1553 -3.1730 37 1 3.4013 1.7301 -1.5407 38 1 5.2242 3.5589 -0.7704 39 1 6.0214 2.3196 -1.7688 40 1 9.8737 6.7076 -2.5560 41 1 -0.5063 -0.0432 -3.4630 42 1 0.9098 2.2220 -5.1056 43 1 -0.4236 1.1073 -5.7222 44 1 -1.9817 1.9700 -3.9151 45 1 -0.6491 3.0852 -3.2976 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336966844.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:53 Heat of formation + Delta-G solvation = -33.110785 kcal Electronic energy + Delta-G solvation = -27316.624063 eV Core-core repulsion = 23461.031357 eV Total energy + Delta-G solvation = -3855.592706 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.89972 -40.50885 -39.15790 -37.75818 -36.30486 -35.17479 -34.58778 -34.37902 -31.55225 -29.48199 -28.17319 -27.65745 -26.22608 -24.96598 -23.15114 -22.02033 -21.70306 -20.68701 -19.80743 -18.73463 -18.59690 -17.87543 -17.48547 -16.88790 -16.74883 -16.59534 -16.42689 -16.10793 -15.63968 -15.44741 -15.33137 -14.82582 -14.69815 -14.38528 -14.34124 -14.18314 -13.87422 -13.70893 -13.49986 -13.23842 -13.16356 -13.11559 -13.02499 -12.92191 -12.65506 -12.57419 -12.45611 -12.37712 -12.10806 -11.72215 -11.27233 -11.16419 -11.00888 -10.96650 -10.83581 -10.27837 -10.12317 -9.86180 -8.65232 -8.35818 -6.12401 1.26397 1.28082 1.35527 1.39617 1.45996 1.57189 1.62238 1.67179 1.96259 2.23835 2.28550 2.70048 2.93701 2.98560 3.23648 3.30757 3.62861 3.74017 3.83977 3.91960 3.96319 4.05980 4.18367 4.22794 4.29147 4.37234 4.51208 4.51790 4.63103 4.70439 4.75720 4.80270 4.80928 4.99963 5.00891 5.16554 5.21012 5.26784 5.39998 5.41797 5.42286 5.44651 6.11788 6.19296 6.40483 6.44521 6.89807 7.06499 7.21507 8.73382 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011572 B = 0.002980 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.081568 B = 9392.179583 C =11041.601173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.015 4.015 3 H 0.170 0.830 4 C 0.240 3.760 5 N -0.469 5.469 6 C 0.523 3.477 7 O -0.569 6.569 8 N -0.591 5.591 9 C 0.086 3.914 10 C 0.150 3.850 11 H 0.142 0.858 12 C 0.100 3.900 13 N -0.713 5.713 14 C 0.540 3.460 15 O -0.556 6.556 16 C -0.136 4.136 17 S -0.141 6.141 18 C -0.548 4.548 19 H 0.079 0.921 20 C 0.017 3.983 21 N -0.908 5.908 22 Si 0.994 3.006 23 H -0.261 1.261 24 H -0.274 1.274 25 H -0.272 1.272 26 C -0.158 4.158 27 C -0.196 4.196 28 C -0.158 4.158 29 H 0.099 0.901 30 H 0.116 0.884 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.405 0.595 38 H 0.110 0.890 39 H 0.100 0.900 40 H 0.271 0.729 41 H 0.126 0.874 42 H 0.092 0.908 43 H 0.100 0.900 44 H 0.111 0.889 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.576 -11.158 -0.421 28.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.039 4.039 3 H 0.187 0.813 4 C -0.079 4.079 5 N -0.145 5.145 6 C 0.309 3.691 7 O -0.448 6.448 8 N -0.322 5.322 9 C -0.056 4.056 10 C 0.047 3.953 11 H 0.159 0.841 12 C -0.024 4.024 13 N -0.366 5.366 14 C 0.325 3.675 15 O -0.433 6.433 16 C -0.287 4.287 17 S 0.086 5.914 18 C -0.696 4.696 19 H 0.097 0.903 20 C -0.188 4.188 21 N -0.545 5.545 22 Si 0.816 3.184 23 H -0.185 1.185 24 H -0.200 1.200 25 H -0.197 1.197 26 C -0.178 4.178 27 C -0.233 4.233 28 C -0.195 4.195 29 H 0.118 0.882 30 H 0.134 0.866 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.241 0.759 38 H 0.128 0.872 39 H 0.118 0.882 40 H 0.080 0.920 41 H 0.144 0.856 42 H 0.110 0.890 43 H 0.118 0.882 44 H 0.129 0.871 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -25.849 -11.259 -0.706 28.203 hybrid contribution 1.489 -0.879 1.383 2.214 sum -24.360 -12.138 0.678 27.225 Atomic orbital electron populations 1.22105 0.86391 1.05141 1.06988 1.19254 1.01333 1.00519 0.82783 0.81279 1.28708 0.92459 0.92749 0.93939 1.81235 1.09448 1.09681 1.14099 1.20392 0.78568 0.85358 0.84759 1.90803 1.45138 1.22342 1.86503 1.47796 1.54053 1.23615 1.06763 1.21664 0.98456 0.98567 0.86880 1.21445 0.90042 0.81173 1.02596 0.84062 1.22119 0.85077 1.00049 0.95118 1.45658 1.19439 1.40210 1.31324 1.19845 0.83740 0.79433 0.84473 1.90707 1.79364 1.44335 1.28936 1.23414 0.97483 1.04450 1.03396 1.85456 1.18001 1.48139 1.39784 1.23231 1.05861 1.26465 1.14028 0.90318 1.26040 1.00821 0.93905 0.98065 1.70166 1.30955 1.22440 1.30929 0.84973 0.77063 0.78571 0.77785 1.18468 1.19980 1.19727 1.22454 0.98174 0.99360 0.97783 1.23233 1.02882 1.04324 0.92841 1.23131 0.97803 0.96994 1.01596 0.88215 0.86576 0.91341 0.91140 0.89788 0.92708 0.91000 0.89057 0.75883 0.87161 0.88171 0.91960 0.85590 0.89006 0.88177 0.87064 0.87759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.37 8.75 71.98 0.63 0.26 16 2 C -0.01 -0.14 2.25 -13.34 -0.03 -0.17 16 3 H 0.17 0.43 6.92 -2.39 -0.02 0.41 16 4 C 0.24 4.66 13.90 89.44 1.24 5.90 16 5 N -0.47 -12.70 18.54 20.01 0.37 -12.33 16 6 C 0.52 7.97 6.64 87.66 0.58 8.55 16 7 O -0.57 -14.82 15.79 -3.04 -0.05 -14.87 16 8 N -0.59 -6.47 2.24 -822.59 -1.85 -8.32 16 9 C 0.09 1.16 9.68 127.77 1.24 2.39 16 10 C 0.15 0.93 1.78 44.99 0.08 1.01 16 11 H 0.14 0.08 4.09 -2.39 -0.01 0.07 16 12 C 0.10 1.35 3.56 86.38 0.31 1.66 16 13 N -0.71 -13.75 5.39 -463.07 -2.49 -16.25 16 14 C 0.54 17.45 7.85 87.66 0.69 18.14 16 15 O -0.56 -22.82 15.86 -3.04 -0.05 -22.87 16 16 C -0.14 -5.11 6.16 71.23 0.44 -4.67 16 17 S -0.14 -7.58 20.57 -56.49 -1.16 -8.74 16 18 C -0.55 -31.04 9.50 67.95 0.65 -30.40 16 19 H 0.08 4.20 7.80 -2.91 -0.02 4.18 16 20 C 0.02 0.95 5.49 84.86 0.47 1.41 16 21 N -0.91 -55.08 13.22 21.65 0.29 -54.80 16 22 Si 0.99 43.72 29.55 68.60 2.03 45.74 16 23 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 24 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 25 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 26 C -0.16 -0.65 5.17 -10.79 -0.06 -0.71 16 27 C -0.20 -1.38 9.59 30.62 0.29 -1.08 16 28 C -0.16 -0.57 9.94 30.62 0.30 -0.27 16 29 H 0.10 0.02 8.13 -2.39 -0.02 0.01 16 30 H 0.12 -0.30 5.36 -2.39 -0.01 -0.31 16 31 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.07 0.79 8.14 -2.38 -0.02 0.78 16 33 H 0.08 1.04 6.52 -2.39 -0.02 1.02 16 34 H 0.05 1.00 7.66 -2.39 -0.02 0.98 16 35 H 0.07 1.18 5.32 -2.39 -0.01 1.16 16 36 H 0.09 1.22 7.44 -2.39 -0.02 1.20 16 37 H 0.41 5.99 7.37 -92.71 -0.68 5.30 16 38 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16 39 H 0.10 3.55 8.14 -2.40 -0.02 3.53 16 40 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 41 H 0.13 0.40 8.14 -2.39 -0.02 0.38 16 42 H 0.09 0.97 5.80 -2.39 -0.01 0.96 16 43 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 45 H 0.10 0.36 7.66 -2.39 -0.02 0.34 16 Total: -1.00 -87.47 388.13 4.27 -83.20 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: 0.35 Total: 7.20 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 6.83 Total: 2.04 kcal Atomic # 7 Polarization: -88.01 SS G_CDS: -3.68 Total: -91.70 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -0.10 Total: -37.74 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: -7.58 SS G_CDS: -1.16 Total: -8.74 kcal Total: -87.47 4.27 -83.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336966844.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.088 kcal (2) G-P(sol) polarization free energy of solvation -87.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds