Wall clock time and date at job start Sat Apr 11 2020 05:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47145 * 2 1 4 4 C 1.53006 * 109.47065 * 240.00872 * 2 1 3 5 5 C 1.52992 * 109.47159 * 174.99654 * 4 2 1 6 6 N 1.46506 * 109.47390 * 179.97438 * 5 4 2 7 7 C 1.34770 * 120.00207 * 180.02562 * 6 5 4 8 8 O 1.21281 * 120.00422 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.00203 * 180.02562 * 7 6 5 10 10 C 1.50699 * 109.47491 * 180.02562 * 9 7 6 11 11 C 1.34843 * 125.88850 * 84.99780 * 10 9 7 12 12 C 1.40894 * 107.41663 * 179.97438 * 11 10 9 13 13 C 1.34848 * 107.41443 * 0.02562 * 12 11 10 14 14 N 1.36342 * 125.88658 * 264.69372 * 10 9 7 15 15 H 0.96999 * 125.64193 * 359.97438 * 14 10 9 16 16 N 1.46497 * 109.47313 * 120.00897 * 2 1 3 17 17 C 1.34777 * 119.99525 * 274.99614 * 16 2 1 18 18 O 1.21283 * 120.00463 * 0.02562 * 17 16 2 19 19 C 1.50700 * 119.99675 * 179.72583 * 17 16 2 20 20 S 1.80997 * 109.47151 * 180.27780 * 19 17 16 21 21 C 1.76196 * 100.00314 * 179.97438 * 20 19 17 22 22 H 1.08005 * 120.00018 * 0.02562 * 21 20 19 23 23 C 1.38799 * 120.00626 * 179.97438 * 21 20 19 24 24 N 1.31628 * 120.00336 * 180.02562 * 23 21 20 25 25 Si 1.86804 * 119.99494 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47141 * 90.00156 * 25 23 21 27 27 H 1.48505 * 109.47177 * 209.99950 * 25 23 21 28 28 H 1.48496 * 109.47259 * 329.99923 * 25 23 21 29 29 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46617 * 299.99415 * 1 2 3 31 31 H 1.09003 * 109.47371 * 59.99288 * 1 2 3 32 32 H 1.09002 * 109.46733 * 294.99544 * 4 2 1 33 33 H 1.09003 * 109.47212 * 54.99369 * 4 2 1 34 34 H 1.08994 * 109.47570 * 300.00116 * 5 4 2 35 35 H 1.09008 * 109.47295 * 60.00253 * 5 4 2 36 36 H 0.97004 * 119.99536 * 0.02562 * 6 5 4 37 37 H 1.09003 * 109.47196 * 300.00327 * 9 7 6 38 38 H 1.09003 * 109.46915 * 59.99643 * 9 7 6 39 39 H 1.08000 * 126.29823 * 0.02753 * 11 10 9 40 40 H 1.07995 * 126.29291 * 179.97438 * 12 11 10 41 41 H 1.08003 * 125.89092 * 180.02562 * 13 12 11 42 42 H 0.97000 * 120.00580 * 95.00360 * 16 2 1 43 43 H 1.09009 * 109.47352 * 300.27556 * 19 17 16 44 44 H 1.08998 * 109.47585 * 60.27844 * 19 17 16 45 45 H 0.97003 * 119.99714 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3139 6 7 4.0532 -1.3040 -2.5099 7 6 5.3741 -1.3402 -2.7750 8 8 6.1585 -0.8013 -2.0233 9 6 5.8765 -2.0505 -4.0056 10 6 7.3785 -1.9453 -4.0684 11 6 8.2547 -2.7635 -3.4511 12 6 9.5505 -2.3137 -3.7730 13 6 9.4166 -1.2373 -4.5742 14 7 8.0857 -1.0098 -4.7638 15 1 7.7050 -0.2989 -5.3028 16 7 2.0184 -0.6908 1.1960 17 6 2.1472 -0.0185 2.3570 18 8 1.8583 1.1582 2.4118 19 6 2.6437 -0.7305 3.5889 20 16 2.6984 0.4307 4.9762 21 6 3.2947 -0.6363 6.2451 22 1 3.5050 -1.6725 6.0248 23 6 3.4953 -0.1451 7.5277 24 7 3.9413 -0.9422 8.4756 25 14 3.1322 1.6473 7.9086 26 1 1.7195 1.7843 8.3449 27 1 4.0327 2.1152 8.9929 28 1 3.3561 2.4673 6.6910 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.7517 -1.7714 -1.2058 33 1 1.6053 -0.2615 -2.1371 34 1 3.8531 0.4371 -1.3574 35 1 3.9995 -1.0727 -0.4262 36 1 3.4258 -1.7355 -3.1109 37 1 5.5876 -3.1007 -3.9623 38 1 5.4421 -1.5906 -4.8933 39 1 8.0086 -3.6089 -2.8257 40 1 10.4801 -2.7501 -3.4388 41 1 10.2244 -0.6584 -4.9972 42 1 2.2492 -1.6319 1.1524 43 1 1.9698 -1.5528 3.8298 44 1 3.6437 -1.1227 3.4038 45 1 4.0811 -0.5988 9.3720 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001355167444.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:08 Heat of formation + Delta-G solvation = -71.692003 kcal Electronic energy + Delta-G solvation = -25591.083082 eV Core-core repulsion = 21733.817369 eV Total energy + Delta-G solvation = -3857.265713 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.04763 -40.91745 -40.37598 -37.67718 -35.58450 -34.68846 -33.29988 -32.72310 -31.80064 -30.47559 -29.70079 -27.86571 -27.38694 -24.45128 -22.57068 -21.90868 -21.58035 -21.41539 -20.95504 -19.90401 -18.58736 -18.10213 -17.95501 -17.34631 -17.08111 -16.75303 -16.55444 -16.37391 -15.89532 -15.23659 -15.10106 -14.94054 -14.76465 -14.59986 -14.46619 -14.39991 -14.15027 -13.98961 -13.41592 -13.37202 -13.31293 -13.13145 -13.07190 -13.01802 -12.63254 -12.55922 -12.37750 -12.35693 -11.90776 -11.87261 -11.18523 -11.00828 -10.95128 -10.55658 -10.19678 -10.05165 -9.72229 -9.01102 -8.92603 -8.53071 -6.23858 0.98041 1.28243 1.29550 1.45587 1.55045 1.57522 1.66031 2.02780 2.22224 2.27039 2.34447 2.56529 2.70793 2.84970 3.72009 3.74828 3.83165 3.94215 4.07341 4.17377 4.21536 4.26022 4.43602 4.44930 4.46167 4.50158 4.56588 4.65727 4.67833 4.82720 4.86518 4.90773 5.05488 5.15302 5.34587 5.34940 5.42077 5.44222 5.54659 5.69196 6.08108 6.09708 6.22080 6.47772 6.59282 6.82733 6.91970 7.21531 7.32506 8.59432 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011349 B = 0.002092 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.484252 B =13381.228964 C =15231.328908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.141 3.859 3 H 0.065 0.935 4 C -0.117 4.117 5 C 0.118 3.882 6 N -0.712 5.712 7 C 0.503 3.497 8 O -0.585 6.585 9 C -0.061 4.061 10 C 0.020 3.980 11 C -0.214 4.214 12 C -0.233 4.233 13 C -0.013 4.013 14 N -0.549 5.549 15 H 0.424 0.576 16 N -0.709 5.709 17 C 0.536 3.464 18 O -0.562 6.562 19 C -0.113 4.113 20 S -0.176 6.176 21 C -0.529 4.529 22 H 0.061 0.939 23 C 0.044 3.956 24 N -0.917 5.917 25 Si 0.915 3.085 26 H -0.260 1.260 27 H -0.259 1.259 28 H -0.238 1.238 29 H 0.076 0.924 30 H 0.031 0.969 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.116 0.884 34 H 0.044 0.956 35 H 0.048 0.952 36 H 0.422 0.578 37 H 0.142 0.858 38 H 0.136 0.864 39 H 0.129 0.871 40 H 0.137 0.863 41 H 0.190 0.810 42 H 0.415 0.585 43 H 0.114 0.886 44 H 0.107 0.893 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.702 -4.777 -36.251 36.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.036 3.964 3 H 0.083 0.917 4 C -0.155 4.155 5 C -0.007 4.007 6 N -0.366 5.366 7 C 0.290 3.710 8 O -0.464 6.464 9 C -0.101 4.101 10 C -0.094 4.094 11 C -0.239 4.239 12 C -0.257 4.257 13 C -0.144 4.144 14 N -0.145 5.145 15 H 0.263 0.737 16 N -0.363 5.363 17 C 0.321 3.679 18 O -0.440 6.440 19 C -0.264 4.264 20 S 0.050 5.950 21 C -0.677 4.677 22 H 0.079 0.921 23 C -0.161 4.161 24 N -0.555 5.555 25 Si 0.737 3.263 26 H -0.184 1.184 27 H -0.183 1.183 28 H -0.162 1.162 29 H 0.095 0.905 30 H 0.050 0.950 31 H 0.107 0.893 32 H 0.124 0.876 33 H 0.134 0.866 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.260 0.740 37 H 0.160 0.840 38 H 0.154 0.846 39 H 0.147 0.853 40 H 0.155 0.845 41 H 0.207 0.793 42 H 0.252 0.748 43 H 0.133 0.867 44 H 0.125 0.875 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.646 -2.374 -35.564 35.681 hybrid contribution 0.455 -1.157 0.775 1.465 sum -1.190 -3.532 -34.789 34.988 Atomic orbital electron populations 1.22122 0.93766 1.03267 1.02373 1.21021 0.95022 0.96839 0.83468 0.91696 1.22004 0.92280 1.03633 0.97596 1.21258 0.95268 0.96449 0.87714 1.45786 1.07155 1.56780 1.26905 1.21247 0.82307 0.79807 0.87597 1.90787 1.56798 1.47436 1.51428 1.20215 0.88639 1.04692 0.96574 1.19890 0.93638 0.94219 1.01611 1.20897 0.93437 1.03703 1.05902 1.21178 0.98048 1.00853 1.05632 1.22250 0.85892 1.01331 1.04962 1.41941 1.06323 1.26024 1.40212 0.73725 1.45913 1.67301 1.14590 1.08528 1.19894 0.76735 0.86589 0.84654 1.90684 1.50717 1.17435 1.85197 1.23293 1.05946 1.02362 0.94828 1.84680 1.87127 1.18571 1.04585 1.22462 1.50569 0.98128 0.96531 0.92052 1.25588 0.93246 1.02361 0.94930 1.70018 1.44652 1.37723 1.03076 0.85851 0.79661 0.80279 0.80480 1.18446 1.18317 1.16243 0.90514 0.95006 0.89274 0.87600 0.86609 0.93779 0.93350 0.73972 0.84000 0.84624 0.85347 0.84462 0.79265 0.74816 0.86740 0.87461 0.91345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 9.48 71.98 0.68 -1.73 16 2 C 0.14 2.44 2.57 44.99 0.12 2.55 16 3 H 0.06 1.52 7.58 -2.38 -0.02 1.50 16 4 C -0.12 -0.94 4.87 30.59 0.15 -0.79 16 5 C 0.12 1.77 5.56 86.38 0.48 2.25 16 6 N -0.71 -7.16 5.56 -463.07 -2.57 -9.73 16 7 C 0.50 8.48 7.82 87.66 0.69 9.16 16 8 O -0.59 -17.69 16.03 -3.03 -0.05 -17.74 16 9 C -0.06 -0.54 6.24 29.10 0.18 -0.36 16 10 C 0.02 0.34 5.66 41.08 0.23 0.57 16 11 C -0.21 -4.60 10.76 22.14 0.24 -4.37 16 12 C -0.23 -4.76 10.86 22.14 0.24 -4.52 16 13 C -0.01 -0.20 11.94 83.21 0.99 0.79 16 14 N -0.55 -7.84 6.08 -182.77 -1.11 -8.95 16 15 H 0.42 3.33 8.96 -92.71 -0.83 2.50 16 16 N -0.71 -15.67 4.53 -442.52 -2.00 -17.67 16 17 C 0.54 18.43 7.81 87.66 0.68 19.12 16 18 O -0.56 -24.10 15.53 -3.04 -0.05 -24.14 16 19 C -0.11 -4.38 6.16 71.24 0.44 -3.94 16 20 S -0.18 -9.14 18.55 -56.49 -1.05 -10.18 16 21 C -0.53 -31.57 10.04 67.95 0.68 -30.89 16 22 H 0.06 3.85 8.03 -2.91 -0.02 3.83 16 23 C 0.04 2.65 5.50 84.86 0.47 3.11 16 24 N -0.92 -56.88 13.97 21.65 0.30 -56.57 16 25 Si 0.92 46.04 27.74 68.60 1.90 47.94 16 26 H -0.26 -12.65 7.11 99.48 0.71 -11.94 16 27 H -0.26 -12.21 7.11 99.48 0.71 -11.50 16 28 H -0.24 -12.04 6.74 99.48 0.67 -11.37 16 29 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.05 0.99 7.75 -2.38 -0.02 0.97 16 36 H 0.42 0.39 8.47 -92.71 -0.79 -0.39 16 37 H 0.14 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.14 0.16 8.14 -2.39 -0.02 0.14 16 39 H 0.13 2.65 8.06 -2.91 -0.02 2.62 16 40 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 41 H 0.19 1.76 8.06 -2.91 -0.02 1.73 16 42 H 0.41 6.60 8.60 -92.71 -0.80 5.80 16 43 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 44 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 45 H 0.28 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -92.38 397.51 0.22 -92.16 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -1.43 Total: 13.92 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: 6.27 Total: -9.04 kcal Atomic # 7 Polarization: -87.54 SS G_CDS: -5.39 Total: -92.92 kcal Atomic # 8 Polarization: -41.78 SS G_CDS: -0.10 Total: -41.88 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 1.90 Total: 47.94 kcal Atomic # 16 Polarization: -9.14 SS G_CDS: -1.05 Total: -10.18 kcal Total: -92.38 0.22 -92.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355167444.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.467 kcal (2) G-P(sol) polarization free energy of solvation -92.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds