Wall clock time and date at job start Sat Apr 11 2020 05:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47257 * 2 1 4 4 C 1.50701 * 109.47382 * 120.00187 * 2 1 3 5 5 H 1.08001 * 119.99899 * 119.99911 * 4 2 1 6 6 C 1.37872 * 119.99944 * 299.99640 * 4 2 1 7 7 N 1.31516 * 120.00412 * 179.97438 * 6 4 2 8 8 Si 1.86801 * 119.99831 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47395 * 89.99968 * 8 6 4 10 10 H 1.48504 * 109.46834 * 209.99740 * 8 6 4 11 11 H 1.48498 * 109.47239 * 329.99484 * 8 6 4 12 12 C 1.50707 * 109.47018 * 240.00296 * 2 1 3 13 13 O 1.21291 * 119.99487 * 240.00039 * 12 2 1 14 14 N 1.34773 * 120.00110 * 59.99637 * 12 2 1 15 15 C 1.39951 * 120.00006 * 184.34710 * 14 12 2 16 16 C 1.38981 * 120.00500 * 324.66018 * 15 14 12 17 17 C 1.38194 * 120.19320 * 179.70024 * 16 15 14 18 18 C 1.38049 * 120.20803 * 0.59221 * 17 16 15 19 19 C 1.39456 * 120.01232 * 359.68107 * 18 17 16 20 20 C 1.48195 * 120.09998 * 179.97438 * 19 18 17 21 21 O 1.21982 * 119.99921 * 180.02562 * 20 19 18 22 22 N 1.33084 * 119.99934 * 0.02664 * 20 19 18 23 23 C 1.34420 * 119.99772 * 244.83993 * 22 20 19 24 24 C 1.41295 * 120.67440 * 354.82452 * 23 22 20 25 25 C 1.35298 * 119.25428 * 179.76530 * 24 23 22 26 26 N 1.35480 * 120.69215 * 0.51313 * 25 24 23 27 27 H 0.97004 * 119.27308 * 179.75102 * 26 25 24 28 28 C 1.35476 * 121.45376 * 359.74045 * 26 25 24 29 29 C 1.35304 * 120.69059 * 359.97438 * 28 26 25 30 30 C 1.38615 * 120.00494 * 144.92914 * 15 14 12 31 31 H 1.08999 * 109.47434 * 60.00222 * 1 2 3 32 32 H 1.09004 * 109.46745 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.46943 * 299.99345 * 1 2 3 34 34 H 0.96989 * 120.00337 * 179.97438 * 7 6 4 35 35 H 0.96999 * 119.99854 * 4.62842 * 14 12 2 36 36 H 1.08002 * 119.90260 * 359.97438 * 16 15 14 37 37 H 1.08001 * 119.89798 * 180.29567 * 17 16 15 38 38 H 1.08006 * 119.99228 * 179.70372 * 18 17 16 39 39 H 1.08001 * 120.37042 * 359.97438 * 24 23 22 40 40 H 1.08003 * 119.65254 * 180.25297 * 25 24 23 41 41 H 1.07999 * 119.65497 * 180.02562 * 28 26 25 42 42 H 1.08000 * 120.37600 * 180.02562 * 29 28 26 43 43 H 1.08004 * 120.10609 * 359.97438 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 2.1374 -0.8596 3.5565 8 14 0.6249 1.2790 2.6541 9 1 -0.8027 0.8727 2.6998 10 1 0.9761 1.9950 3.9068 11 1 0.8472 2.1765 1.4920 12 6 2.0323 -0.7104 -1.2306 13 8 2.7296 -1.6966 -1.1192 14 7 1.7067 -0.2499 -2.4546 15 6 2.0963 -0.9601 -3.5959 16 6 3.3160 -1.6260 -3.6173 17 6 3.7019 -2.3336 -4.7399 18 6 2.8838 -2.3731 -5.8512 19 6 1.6607 -1.7034 -5.8412 20 6 0.7812 -1.7440 -7.0333 21 8 -0.2881 -1.1571 -7.0227 22 7 1.1581 -2.4209 -8.1154 23 6 1.3990 -1.7689 -9.2659 24 6 1.1526 -0.3818 -9.3735 25 6 1.4098 0.2466 -10.5438 26 7 1.8885 -0.4420 -11.6078 27 1 2.0623 0.0285 -12.4381 28 6 2.1300 -1.7732 -11.5378 29 6 1.8985 -2.4578 -10.3939 30 6 1.2683 -0.9947 -4.7070 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5137 0.8900 34 1 1.9034 -0.5280 4.4374 35 1 1.2057 0.5758 -2.5447 36 1 3.9621 -1.5941 -2.7525 37 1 4.6486 -2.8533 -4.7497 38 1 3.1910 -2.9232 -6.7285 39 1 0.7665 0.1713 -8.5301 40 1 1.2277 1.3075 -10.6319 41 1 2.5120 -2.2933 -12.4038 42 1 2.0932 -3.5189 -10.3435 43 1 0.3219 -0.4746 -4.6938 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361477914.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:15 Heat of formation + Delta-G solvation = 30.000551 kcal Electronic energy + Delta-G solvation = -27462.044013 eV Core-core repulsion = 23473.744069 eV Total energy + Delta-G solvation = -3988.299944 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.21184 -40.16978 -39.26796 -37.67023 -35.30363 -34.23103 -33.89849 -32.22836 -31.54692 -31.21335 -30.60825 -29.03051 -25.16098 -25.12861 -24.02578 -23.72769 -22.71928 -21.74613 -20.23431 -19.70486 -19.10813 -17.86625 -17.02910 -16.79685 -16.56325 -16.05668 -15.81775 -15.63090 -15.14734 -14.93314 -14.79203 -14.59957 -14.50323 -14.05779 -13.69755 -13.60354 -13.29427 -13.15675 -12.76921 -12.39439 -12.33263 -12.24552 -11.81833 -11.66160 -11.55581 -11.26200 -11.00317 -10.63878 -10.47586 -10.30483 -10.25188 -9.91138 -9.63887 -9.24953 -9.12088 -8.88297 -8.63357 -8.57469 -7.89439 -7.79310 -6.05496 -4.06473 0.44455 0.81184 1.08584 1.54198 2.29893 2.64121 3.16788 3.24466 3.31081 3.36980 3.40663 3.63842 3.94017 4.02450 4.11650 4.36537 4.37655 4.64505 4.66316 4.96552 5.07224 5.15738 5.23630 5.36910 5.48558 5.54598 5.60534 5.65353 5.79527 5.90495 6.03056 6.11480 6.20637 6.23823 6.28798 6.39836 6.47147 6.56723 6.61330 6.65440 6.71880 6.81332 7.13869 7.29703 7.51008 7.55673 7.96992 8.25514 8.52053 8.92512 9.13215 9.52572 11.07238 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027374 B = 0.002084 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.636481 B =13433.295120 C =13990.463630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.002 4.002 3 H 0.056 0.944 4 C -0.508 4.508 5 H 0.094 0.906 6 C 0.071 3.929 7 N -0.894 5.894 8 Si 0.884 3.116 9 H -0.278 1.278 10 H -0.295 1.295 11 H -0.267 1.267 12 C 0.528 3.472 13 O -0.510 6.510 14 N -0.689 5.689 15 C 0.147 3.853 16 C -0.096 4.096 17 C -0.118 4.118 18 C -0.088 4.088 19 C -0.127 4.127 20 C 0.545 3.455 21 O -0.527 6.527 22 N -0.628 5.628 23 C 0.309 3.691 24 C -0.252 4.252 25 C 0.136 3.864 26 N -0.590 5.590 27 H 0.421 0.579 28 C 0.125 3.875 29 C -0.196 4.196 30 C -0.099 4.099 31 H 0.034 0.966 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.265 0.735 35 H 0.407 0.593 36 H 0.145 0.855 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.149 0.851 40 H 0.168 0.832 41 H 0.172 0.828 42 H 0.154 0.846 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.766 4.578 -37.195 37.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.024 4.024 3 H 0.073 0.927 4 C -0.546 4.546 5 H 0.112 0.888 6 C -0.131 4.131 7 N -0.532 5.532 8 Si 0.715 3.285 9 H -0.205 1.205 10 H -0.223 1.223 11 H -0.192 1.192 12 C 0.318 3.682 13 O -0.382 6.382 14 N -0.335 5.335 15 C 0.052 3.948 16 C -0.116 4.116 17 C -0.137 4.137 18 C -0.107 4.107 19 C -0.131 4.131 20 C 0.335 3.665 21 O -0.406 6.406 22 N -0.363 5.363 23 C 0.150 3.850 24 C -0.280 4.280 25 C 0.005 3.995 26 N -0.193 5.193 27 H 0.257 0.743 28 C -0.005 4.005 29 C -0.222 4.222 30 C -0.120 4.120 31 H 0.053 0.947 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.242 0.758 36 H 0.163 0.837 37 H 0.146 0.854 38 H 0.147 0.853 39 H 0.166 0.834 40 H 0.185 0.815 41 H 0.189 0.811 42 H 0.172 0.828 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.639 3.337 -36.251 36.441 hybrid contribution -1.062 1.939 0.073 2.212 sum 0.577 5.277 -36.178 36.566 Atomic orbital electron populations 1.22139 0.97038 1.01795 0.99449 1.19336 0.93419 0.97612 0.92011 0.92659 1.20905 1.32334 1.14211 0.87116 0.88761 1.24973 0.95777 0.96600 0.95736 1.69874 1.45327 1.40083 0.97879 0.86913 0.80774 0.83746 0.77115 1.20454 1.22257 1.19234 1.21563 0.78731 0.84342 0.83589 1.90579 1.35743 1.25906 1.86002 1.43997 1.58059 1.26852 1.04591 1.17757 0.93089 0.96736 0.87202 1.21618 0.94732 0.96501 0.98758 1.21042 1.00127 0.99719 0.92782 1.21247 0.93231 0.97716 0.98526 1.19817 0.96303 1.02258 0.94719 1.19563 0.85603 0.73288 0.88094 1.90795 1.23971 1.39203 1.86602 1.68458 1.33540 1.34506 0.99817 1.18725 0.86707 0.89629 0.89925 1.21871 1.10220 0.96405 0.99456 1.21802 0.92885 0.97883 0.86894 1.41102 1.55575 1.08181 1.14491 0.74309 1.21855 0.95870 0.83023 0.99757 1.20718 1.08317 1.01917 0.91265 1.21003 0.98742 1.00169 0.92108 0.94665 0.92189 0.93071 0.92503 0.75769 0.83742 0.85437 0.85285 0.83372 0.81462 0.81092 0.82814 0.84997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 8.57 37.16 0.32 -2.78 16 2 C 0.00 -0.05 2.23 -92.92 -0.21 -0.26 16 3 H 0.06 1.24 7.20 -51.93 -0.37 0.87 16 4 C -0.51 -14.73 8.96 -34.44 -0.31 -15.04 16 5 H 0.09 3.10 7.00 -52.49 -0.37 2.74 16 6 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 7 N -0.89 -27.77 13.96 55.43 0.77 -26.99 16 8 Si 0.88 21.47 24.37 -169.99 -4.14 17.33 16 9 H -0.28 -6.57 6.87 56.52 0.39 -6.18 16 10 H -0.30 -7.21 7.11 56.52 0.40 -6.81 16 11 H -0.27 -6.00 6.53 56.52 0.37 -5.64 16 12 C 0.53 11.81 6.99 -10.98 -0.08 11.73 16 13 O -0.51 -13.11 12.91 5.55 0.07 -13.04 16 14 N -0.69 -12.35 5.19 -9.89 -0.05 -12.40 16 15 C 0.15 2.61 6.29 -83.74 -0.53 2.08 16 16 C -0.10 -1.68 8.69 -39.32 -0.34 -2.02 16 17 C -0.12 -1.75 10.03 -39.67 -0.40 -2.15 16 18 C -0.09 -1.30 9.58 -39.20 -0.38 -1.67 16 19 C -0.13 -2.08 5.87 -104.93 -0.62 -2.70 16 20 C 0.54 9.15 6.15 -12.92 -0.08 9.07 16 21 O -0.53 -9.97 15.81 4.93 0.08 -9.89 16 22 N -0.63 -9.24 9.60 -10.96 -0.11 -9.35 16 23 C 0.31 3.27 6.60 -84.41 -0.56 2.71 16 24 C -0.25 -2.18 9.05 -39.47 -0.36 -2.53 16 25 C 0.14 0.44 11.17 -16.99 -0.19 0.25 16 26 N -0.59 -0.30 5.24 -13.04 -0.07 -0.36 16 27 H 0.42 -1.45 8.90 -40.82 -0.36 -1.81 16 28 C 0.12 0.19 11.17 -16.99 -0.19 0.00 16 29 C -0.20 -1.19 10.00 -39.47 -0.39 -1.59 16 30 C -0.10 -1.65 9.51 -39.02 -0.37 -2.02 16 31 H 0.03 0.59 7.67 -51.93 -0.40 0.20 16 32 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.05 1.12 3.27 -51.93 -0.17 0.95 16 34 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 35 H 0.41 5.97 8.39 -40.82 -0.34 5.63 16 36 H 0.14 2.79 6.24 -52.49 -0.33 2.46 16 37 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 38 H 0.13 1.68 7.54 -52.48 -0.40 1.29 16 39 H 0.15 1.62 6.35 -52.49 -0.33 1.29 16 40 H 0.17 -0.03 8.06 -52.48 -0.42 -0.46 16 41 H 0.17 -0.44 8.06 -52.49 -0.42 -0.87 16 42 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.13 2.12 7.65 -52.48 -0.40 1.72 16 LS Contribution 362.77 15.07 5.47 5.47 Total: -1.00 -41.57 362.77 -7.51 -49.08 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -4.77 Total: 5.11 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -4.77 Total: -4.95 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: 0.55 Total: -49.11 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: 0.15 Total: -22.93 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.14 Total: 17.33 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -41.57 -7.51 -49.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361477914.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.083 kcal (2) G-P(sol) polarization free energy of solvation -41.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds