Wall clock time and date at job start Sat Apr 11 2020 05:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47257 * 2 1 4 4 C 1.50701 * 109.47382 * 120.00187 * 2 1 3 5 5 H 1.08001 * 119.99899 * 119.99911 * 4 2 1 6 6 C 1.37872 * 119.99944 * 299.99640 * 4 2 1 7 7 N 1.31516 * 120.00412 * 179.97438 * 6 4 2 8 8 Si 1.86801 * 119.99831 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47395 * 89.99968 * 8 6 4 10 10 H 1.48504 * 109.46834 * 209.99740 * 8 6 4 11 11 H 1.48498 * 109.47239 * 329.99484 * 8 6 4 12 12 C 1.50707 * 109.47018 * 240.00296 * 2 1 3 13 13 O 1.21291 * 119.99487 * 240.00039 * 12 2 1 14 14 N 1.34773 * 120.00110 * 59.99637 * 12 2 1 15 15 C 1.39951 * 120.00006 * 184.34710 * 14 12 2 16 16 C 1.38981 * 120.00500 * 324.66018 * 15 14 12 17 17 C 1.38194 * 120.19320 * 179.70024 * 16 15 14 18 18 C 1.38049 * 120.20803 * 0.59221 * 17 16 15 19 19 C 1.39456 * 120.01232 * 359.68107 * 18 17 16 20 20 C 1.48195 * 120.09998 * 179.97438 * 19 18 17 21 21 O 1.21982 * 119.99921 * 180.02562 * 20 19 18 22 22 N 1.33084 * 119.99934 * 0.02664 * 20 19 18 23 23 C 1.34420 * 119.99772 * 244.83993 * 22 20 19 24 24 C 1.41295 * 120.67440 * 354.82452 * 23 22 20 25 25 C 1.35298 * 119.25428 * 179.76530 * 24 23 22 26 26 N 1.35480 * 120.69215 * 0.51313 * 25 24 23 27 27 H 0.97004 * 119.27308 * 179.75102 * 26 25 24 28 28 C 1.35476 * 121.45376 * 359.74045 * 26 25 24 29 29 C 1.35304 * 120.69059 * 359.97438 * 28 26 25 30 30 C 1.38615 * 120.00494 * 144.92914 * 15 14 12 31 31 H 1.08999 * 109.47434 * 60.00222 * 1 2 3 32 32 H 1.09004 * 109.46745 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.46943 * 299.99345 * 1 2 3 34 34 H 0.96989 * 120.00337 * 179.97438 * 7 6 4 35 35 H 0.96999 * 119.99854 * 4.62842 * 14 12 2 36 36 H 1.08002 * 119.90260 * 359.97438 * 16 15 14 37 37 H 1.08001 * 119.89798 * 180.29567 * 17 16 15 38 38 H 1.08006 * 119.99228 * 179.70372 * 18 17 16 39 39 H 1.08001 * 120.37042 * 359.97438 * 24 23 22 40 40 H 1.08003 * 119.65254 * 180.25297 * 25 24 23 41 41 H 1.07999 * 119.65497 * 180.02562 * 28 26 25 42 42 H 1.08000 * 120.37600 * 180.02562 * 29 28 26 43 43 H 1.08004 * 120.10609 * 359.97438 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 2.1374 -0.8596 3.5565 8 14 0.6249 1.2790 2.6541 9 1 -0.8027 0.8727 2.6998 10 1 0.9761 1.9950 3.9068 11 1 0.8472 2.1765 1.4920 12 6 2.0323 -0.7104 -1.2306 13 8 2.7296 -1.6966 -1.1192 14 7 1.7067 -0.2499 -2.4546 15 6 2.0963 -0.9601 -3.5959 16 6 3.3160 -1.6260 -3.6173 17 6 3.7019 -2.3336 -4.7399 18 6 2.8838 -2.3731 -5.8512 19 6 1.6607 -1.7034 -5.8412 20 6 0.7812 -1.7440 -7.0333 21 8 -0.2881 -1.1571 -7.0227 22 7 1.1581 -2.4209 -8.1154 23 6 1.3990 -1.7689 -9.2659 24 6 1.1526 -0.3818 -9.3735 25 6 1.4098 0.2466 -10.5438 26 7 1.8885 -0.4420 -11.6078 27 1 2.0623 0.0285 -12.4381 28 6 2.1300 -1.7732 -11.5378 29 6 1.8985 -2.4578 -10.3939 30 6 1.2683 -0.9947 -4.7070 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5137 0.8900 34 1 1.9034 -0.5280 4.4374 35 1 1.2057 0.5758 -2.5447 36 1 3.9621 -1.5941 -2.7525 37 1 4.6486 -2.8533 -4.7497 38 1 3.1910 -2.9232 -6.7285 39 1 0.7665 0.1713 -8.5301 40 1 1.2277 1.3075 -10.6319 41 1 2.5120 -2.2933 -12.4038 42 1 2.0932 -3.5189 -10.3435 43 1 0.3219 -0.4746 -4.6938 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361477914.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:15 Heat of formation + Delta-G solvation = -4.412508 kcal Electronic energy + Delta-G solvation = -27463.536275 eV Core-core repulsion = 23473.744069 eV Total energy + Delta-G solvation = -3989.792207 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.83081 -41.51216 -40.43389 -39.01720 -36.04576 -35.89065 -35.77342 -33.41648 -32.62378 -32.39450 -31.60516 -30.35835 -27.16065 -25.98468 -25.40345 -24.48124 -23.75668 -23.13547 -21.57638 -20.51923 -20.00344 -19.03769 -18.78861 -17.82354 -17.62809 -17.42866 -17.25253 -16.69381 -16.29535 -16.18517 -16.05894 -15.63889 -15.31281 -15.24432 -15.11094 -14.79758 -14.57821 -14.47327 -14.10849 -13.84524 -13.61717 -13.55419 -13.03537 -12.85159 -12.82772 -12.60409 -12.53414 -12.27322 -12.18454 -11.55351 -11.47826 -11.36747 -11.24930 -10.79658 -10.58896 -10.56822 -10.19247 -9.97440 -9.22023 -8.54401 -8.28683 -6.37217 -0.34816 0.14871 0.23999 0.37652 1.33183 1.38915 1.50166 1.54301 1.75119 2.06494 2.10372 2.32959 2.58763 2.83078 3.04520 3.22935 3.79853 3.81682 3.89611 3.98461 4.13070 4.17104 4.20481 4.25429 4.33627 4.36528 4.42320 4.53121 4.55971 4.70644 4.74077 4.85063 4.94220 5.09548 5.21124 5.30502 5.31869 5.38370 5.38878 5.44859 5.47875 5.68730 5.82846 5.93027 6.21424 6.32172 6.51875 6.62502 6.77785 7.19650 7.31690 7.37401 8.88678 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027374 B = 0.002084 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.636481 B =13433.295120 C =13990.463630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.004 4.004 3 H 0.078 0.922 4 C -0.522 4.522 5 H 0.033 0.967 6 C 0.007 3.993 7 N -0.950 5.950 8 Si 0.958 3.042 9 H -0.263 1.263 10 H -0.297 1.297 11 H -0.229 1.229 12 C 0.529 3.471 13 O -0.556 6.556 14 N -0.668 5.668 15 C 0.130 3.870 16 C -0.114 4.114 17 C -0.109 4.109 18 C -0.074 4.074 19 C -0.138 4.138 20 C 0.547 3.453 21 O -0.576 6.576 22 N -0.696 5.696 23 C 0.298 3.702 24 C -0.306 4.306 25 C 0.183 3.817 26 N -0.556 5.556 27 H 0.451 0.549 28 C 0.173 3.827 29 C -0.234 4.234 30 C -0.099 4.099 31 H 0.084 0.916 32 H 0.044 0.956 33 H 0.050 0.950 34 H 0.268 0.732 35 H 0.424 0.576 36 H 0.123 0.877 37 H 0.157 0.843 38 H 0.148 0.852 39 H 0.115 0.885 40 H 0.213 0.787 41 H 0.232 0.768 42 H 0.155 0.845 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.455 7.403 -43.207 43.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.025 4.025 3 H 0.096 0.904 4 C -0.560 4.560 5 H 0.051 0.949 6 C -0.189 4.189 7 N -0.590 5.590 8 Si 0.783 3.217 9 H -0.189 1.189 10 H -0.225 1.225 11 H -0.152 1.152 12 C 0.319 3.681 13 O -0.432 6.432 14 N -0.315 5.315 15 C 0.035 3.965 16 C -0.135 4.135 17 C -0.128 4.128 18 C -0.093 4.093 19 C -0.142 4.142 20 C 0.338 3.662 21 O -0.458 6.458 22 N -0.439 5.439 23 C 0.149 3.851 24 C -0.334 4.334 25 C 0.050 3.950 26 N -0.159 5.159 27 H 0.293 0.707 28 C 0.041 3.959 29 C -0.260 4.260 30 C -0.120 4.120 31 H 0.102 0.898 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.263 0.737 36 H 0.141 0.859 37 H 0.175 0.825 38 H 0.166 0.834 39 H 0.133 0.867 40 H 0.230 0.770 41 H 0.248 0.752 42 H 0.172 0.828 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.355 6.224 -42.456 42.931 hybrid contribution -0.791 1.045 1.386 1.907 sum 0.564 7.269 -41.070 41.712 Atomic orbital electron populations 1.22060 0.94489 1.01705 1.01765 1.19279 0.95337 0.97812 0.90110 0.90401 1.21037 1.31888 1.12993 0.90119 0.94895 1.26018 0.97388 1.00747 0.94793 1.70064 1.47477 1.42689 0.98727 0.85722 0.78676 0.79065 0.78238 1.18880 1.22516 1.15160 1.21370 0.78341 0.83752 0.84664 1.90571 1.37897 1.27960 1.86771 1.43586 1.57295 1.27194 1.03388 1.17820 0.93662 0.97772 0.87215 1.21584 0.94898 0.97922 0.99085 1.21305 1.01110 0.98704 0.91648 1.21428 0.92357 0.96717 0.98845 1.20201 0.97111 1.01916 0.94923 1.19674 0.84961 0.72531 0.89017 1.90720 1.25641 1.42204 1.87267 1.68242 1.41228 1.33489 1.00903 1.19358 0.85072 0.90811 0.89851 1.21705 1.14431 0.96071 1.01164 1.22282 0.88108 0.99480 0.85158 1.41481 1.51305 1.08238 1.14854 0.70727 1.22657 0.90900 0.82847 0.99488 1.20871 1.10847 1.02661 0.91625 1.20999 0.98648 1.00439 0.91938 0.89753 0.93703 0.93106 0.92317 0.73723 0.85932 0.82545 0.83445 0.86717 0.77039 0.75218 0.82751 0.84798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.78 8.57 71.98 0.62 -5.16 16 2 C 0.00 -0.18 2.23 -12.28 -0.03 -0.21 16 3 H 0.08 3.35 7.20 -2.39 -0.02 3.33 16 4 C -0.52 -31.78 8.96 25.60 0.23 -31.55 16 5 H 0.03 2.35 7.00 -2.91 -0.02 2.33 16 6 C 0.01 0.44 5.45 84.65 0.46 0.90 16 7 N -0.95 -61.83 13.96 21.45 0.30 -61.54 16 8 Si 0.96 43.90 24.37 68.60 1.67 45.57 16 9 H -0.26 -11.40 6.87 99.48 0.68 -10.72 16 10 H -0.30 -13.67 7.11 99.48 0.71 -12.97 16 11 H -0.23 -9.02 6.53 99.48 0.65 -8.37 16 12 C 0.53 24.46 6.99 87.66 0.61 25.07 16 13 O -0.56 -30.59 12.91 -3.06 -0.04 -30.63 16 14 N -0.67 -24.25 5.19 -303.59 -1.58 -25.83 16 15 C 0.13 4.77 6.29 38.11 0.24 5.01 16 16 C -0.11 -4.22 8.69 22.44 0.19 -4.03 16 17 C -0.11 -3.31 10.03 22.21 0.22 -3.09 16 18 C -0.07 -2.25 9.58 22.52 0.22 -2.03 16 19 C -0.14 -4.76 5.87 -20.07 -0.12 -4.88 16 20 C 0.55 19.83 6.15 87.15 0.54 20.37 16 21 O -0.58 -23.69 15.81 -5.26 -0.08 -23.77 16 22 N -0.70 -21.86 9.60 -307.63 -2.95 -24.81 16 23 C 0.30 6.33 6.60 40.25 0.27 6.60 16 24 C -0.31 -5.09 9.05 22.34 0.20 -4.88 16 25 C 0.18 0.33 11.17 83.45 0.93 1.27 16 26 N -0.56 3.20 5.24 -195.18 -1.02 2.18 16 27 H 0.45 -6.89 8.90 -92.71 -0.82 -7.72 16 28 C 0.17 -0.53 11.17 83.45 0.93 0.41 16 29 C -0.23 -2.28 10.00 22.34 0.22 -2.05 16 30 C -0.10 -3.47 9.51 22.63 0.22 -3.26 16 31 H 0.08 2.58 7.67 -2.39 -0.02 2.56 16 32 H 0.04 1.92 8.14 -2.38 -0.02 1.91 16 33 H 0.05 2.06 3.27 -2.39 -0.01 2.05 16 34 H 0.27 16.14 8.31 -92.72 -0.77 15.37 16 35 H 0.42 12.01 8.39 -92.71 -0.78 11.23 16 36 H 0.12 5.09 6.24 -2.91 -0.02 5.07 16 37 H 0.16 3.71 8.06 -2.91 -0.02 3.69 16 38 H 0.15 3.89 7.54 -2.91 -0.02 3.87 16 39 H 0.11 2.74 6.35 -2.91 -0.02 2.72 16 40 H 0.21 -1.39 8.06 -2.91 -0.02 -1.41 16 41 H 0.23 -3.20 8.06 -2.91 -0.02 -3.22 16 42 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 43 H 0.13 4.54 7.65 -2.91 -0.02 4.52 16 Total: -1.00 -106.36 362.77 1.66 -104.69 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -0.59 Total: 15.66 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: 5.95 Total: -1.53 kcal Atomic # 7 Polarization: -104.74 SS G_CDS: -5.25 Total: -109.99 kcal Atomic # 8 Polarization: -54.28 SS G_CDS: -0.12 Total: -54.40 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.67 Total: 45.57 kcal Total: -106.36 1.66 -104.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361477914.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.282 kcal (2) G-P(sol) polarization free energy of solvation -106.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -104.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds