Wall clock time and date at job start Sat Apr 11 2020 05:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46961 * 2 1 4 4 N 1.46498 * 109.47043 * 120.00009 * 2 1 3 5 5 C 1.34773 * 120.00074 * 274.99638 * 4 2 1 6 6 O 1.21550 * 120.00277 * 0.02562 * 5 4 2 7 7 C 1.47849 * 120.00142 * 180.02562 * 5 4 2 8 8 C 1.39575 * 120.14483 * 359.72424 * 7 5 4 9 9 C 1.37953 * 119.85397 * 179.79310 * 8 7 5 10 10 C 1.38360 * 120.14575 * 0.48553 * 9 8 7 11 11 C 1.38362 * 120.28897 * 359.74812 * 10 9 8 12 12 C 1.37952 * 120.14833 * 0.02562 * 11 10 9 13 13 C 1.50707 * 109.47375 * 240.00017 * 2 1 3 14 14 O 1.21267 * 120.00003 * 240.00283 * 13 2 1 15 15 N 1.34774 * 119.99811 * 59.99618 * 13 2 1 16 16 C 1.39260 * 119.99923 * 185.58392 * 15 13 2 17 17 C 1.39670 * 119.57787 * 18.83541 * 16 15 13 18 18 C 1.38658 * 119.50057 * 180.02562 * 17 16 15 19 19 C 1.38346 * 118.66468 * 359.97438 * 18 17 16 20 20 C 1.40570 * 119.13295 * 0.02562 * 19 18 17 21 21 C 1.41344 * 119.79081 * 179.97438 * 20 19 18 22 22 H 1.08001 * 119.99765 * 8.92929 * 21 20 19 23 23 C 1.40027 * 120.00299 * 188.93332 * 21 20 19 24 24 N 1.30738 * 119.99887 * 196.06764 * 23 21 20 25 25 Si 1.86804 * 119.99942 * 16.07189 * 23 21 20 26 26 H 1.48500 * 109.46803 * 270.00144 * 25 23 21 27 27 H 1.48493 * 109.47173 * 29.99762 * 25 23 21 28 28 H 1.48498 * 109.46809 * 149.99998 * 25 23 21 29 29 N 1.31906 * 119.57496 * 199.12757 * 16 15 13 30 30 H 1.09000 * 109.47339 * 300.00146 * 1 2 3 31 31 H 1.09001 * 109.46918 * 59.99990 * 1 2 3 32 32 H 1.09002 * 109.46961 * 180.02562 * 1 2 3 33 33 H 0.97005 * 120.00079 * 95.00072 * 4 2 1 34 34 H 1.08006 * 120.07095 * 0.02562 * 8 7 5 35 35 H 1.08003 * 119.92787 * 180.23263 * 9 8 7 36 36 H 1.08001 * 119.85409 * 179.72127 * 10 9 8 37 37 H 1.07999 * 119.92554 * 179.97438 * 11 10 9 38 38 H 1.08001 * 120.07830 * 179.97438 * 12 11 10 39 39 H 0.96996 * 119.99948 * 5.58649 * 15 13 2 40 40 H 1.08002 * 120.24653 * 0.03972 * 17 16 15 41 41 H 1.07996 * 120.66667 * 179.97438 * 18 17 16 42 42 H 1.08001 * 120.43032 * 180.02562 * 19 18 17 43 43 H 0.97003 * 119.99811 * 354.93238 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0183 2.3571 6 8 1.8576 1.1610 2.4118 7 6 2.6404 -0.7151 3.5641 8 6 2.9682 -2.0706 3.5062 9 6 3.4320 -2.7138 4.6350 10 6 3.5631 -2.0206 5.8253 11 6 3.2352 -0.6780 5.8907 12 6 2.7747 -0.0217 4.7681 13 6 2.0324 -0.7104 -1.2305 14 8 2.7296 -1.6964 -1.1192 15 7 1.7068 -0.2500 -2.4546 16 6 2.0722 -0.9699 -3.5892 17 6 2.4093 -2.3201 -3.4701 18 6 2.7735 -3.0353 -4.6008 19 6 2.7909 -2.3837 -5.8211 20 6 2.4410 -1.0233 -5.8756 21 6 2.4546 -0.3438 -7.1149 22 1 2.5911 -0.8969 -8.0325 23 6 2.2913 1.0464 -7.1531 24 7 1.9902 1.6385 -8.2791 25 14 2.5038 2.0549 -5.5950 26 1 1.1976 2.1697 -4.8979 27 1 3.4841 1.3862 -4.7024 28 1 2.9983 3.4102 -5.9464 29 7 2.1011 -0.3666 -4.7618 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.2490 -1.6318 1.1526 34 1 2.8625 -2.6138 2.5787 35 1 3.6896 -3.7617 4.5906 36 1 3.9224 -2.5299 6.7073 37 1 3.3394 -0.1428 6.8230 38 1 2.5187 1.0262 4.8205 39 1 1.2179 0.5829 -2.5452 40 1 2.3864 -2.8034 -2.5045 41 1 3.0381 -4.0799 -4.5303 42 1 3.0697 -2.9134 -6.7201 43 1 1.9521 1.1257 -9.1016 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363752940.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:19 Heat of formation + Delta-G solvation = -14.866580 kcal Electronic energy + Delta-G solvation = -27920.334630 eV Core-core repulsion = 23930.089101 eV Total energy + Delta-G solvation = -3990.245529 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.88781 -40.05966 -38.67571 -38.09257 -35.28578 -34.74999 -33.60635 -32.26887 -31.30082 -31.14825 -30.44661 -29.23263 -25.65283 -25.10470 -23.97907 -22.89107 -22.01371 -21.74760 -20.59001 -19.98044 -18.90164 -18.27017 -17.47558 -16.87489 -16.17621 -16.09624 -15.61950 -15.40171 -15.09505 -14.97023 -14.78805 -14.38059 -14.12762 -13.95624 -13.80859 -13.61050 -13.25097 -13.04877 -12.71664 -12.57647 -12.52191 -12.28145 -12.04288 -11.97421 -11.78967 -11.46457 -11.19505 -10.91101 -10.40475 -10.23617 -10.06441 -9.82543 -9.59396 -9.37968 -9.34512 -9.19975 -9.13400 -8.58024 -7.97426 -7.50549 -7.32468 -4.81221 0.50144 0.99301 2.04329 2.53260 2.60866 2.64542 2.91299 3.26823 3.44706 3.54828 3.57789 3.86927 4.28957 4.31677 4.44560 4.52907 4.54016 4.56448 4.75481 4.83086 4.93491 5.00008 5.10745 5.38319 5.41301 5.48409 5.55463 5.60380 5.79038 5.90803 5.93874 5.98562 6.01693 6.05898 6.07525 6.38540 6.45343 6.48102 6.49568 7.04254 7.10699 7.22793 7.38562 7.47027 7.52534 7.69872 7.91940 8.04000 8.16032 8.32157 8.59611 9.36895 9.92887 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020573 B = 0.002491 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.652846 B =11238.092215 C =12123.866926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.127 3.873 3 H 0.120 0.880 4 N -0.707 5.707 5 C 0.563 3.437 6 O -0.536 6.536 7 C -0.133 4.133 8 C -0.083 4.083 9 C -0.127 4.127 10 C -0.095 4.095 11 C -0.130 4.130 12 C -0.059 4.059 13 C 0.514 3.486 14 O -0.511 6.511 15 N -0.646 5.646 16 C 0.381 3.619 17 C -0.310 4.310 18 C -0.037 4.037 19 C -0.275 4.275 20 C 0.273 3.727 21 C -0.479 4.479 22 H 0.084 0.916 23 C 0.049 3.951 24 N -0.801 5.801 25 Si 1.142 2.858 26 H -0.287 1.287 27 H -0.280 1.280 28 H -0.325 1.325 29 N -0.593 5.593 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.410 0.590 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.137 0.863 39 H 0.410 0.590 40 H 0.137 0.863 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.769 -5.319 24.052 24.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.019 3.981 3 H 0.138 0.862 4 N -0.361 5.361 5 C 0.351 3.649 6 O -0.414 6.414 7 C -0.136 4.136 8 C -0.102 4.102 9 C -0.145 4.145 10 C -0.113 4.113 11 C -0.148 4.148 12 C -0.078 4.078 13 C 0.299 3.701 14 O -0.386 6.386 15 N -0.291 5.291 16 C 0.150 3.850 17 C -0.335 4.335 18 C -0.061 4.061 19 C -0.298 4.298 20 C 0.150 3.850 21 C -0.511 4.511 22 H 0.102 0.898 23 C -0.174 4.174 24 N -0.422 5.422 25 Si 0.975 3.025 26 H -0.214 1.214 27 H -0.208 1.208 28 H -0.258 1.258 29 N -0.318 5.318 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.248 0.752 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.145 0.855 37 H 0.147 0.853 38 H 0.155 0.845 39 H 0.246 0.754 40 H 0.155 0.845 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.844 -2.846 24.550 24.729 hybrid contribution 0.207 -2.629 -1.043 2.836 sum -0.637 -5.475 23.508 24.145 Atomic orbital electron populations 1.22157 0.92227 1.03520 1.04009 1.20762 0.96026 0.98268 0.83066 0.86246 1.45647 1.67190 1.14929 1.08307 1.18256 0.77359 0.86389 0.82911 1.90778 1.50243 1.15378 1.85011 1.19898 1.05002 0.94511 0.94230 1.21420 0.96363 0.93377 0.99055 1.21146 1.00209 1.00487 0.92703 1.21410 0.97413 0.94530 0.97975 1.21177 1.00138 0.94897 0.98592 1.21305 0.95001 1.00518 0.91005 1.20454 0.80218 0.85127 0.84264 1.90623 1.36150 1.25858 1.85976 1.43153 1.55536 1.26110 1.04326 1.18054 0.93805 0.88025 0.85089 1.21462 1.18330 0.93444 1.00273 1.20912 0.94859 0.97835 0.92501 1.21625 1.14263 0.96734 0.97146 1.18178 0.87588 0.89620 0.89661 1.20677 1.43239 0.94580 0.92595 0.89771 1.27670 0.88309 0.96956 1.04433 1.70614 1.28580 1.42148 1.00895 0.82150 0.78287 0.70550 0.71517 1.21381 1.20755 1.25767 1.66185 1.29414 1.37886 0.98312 0.90515 0.90412 0.91460 0.75157 0.85282 0.85242 0.85545 0.85265 0.84548 0.75436 0.84547 0.87629 0.87660 0.90388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.39 37.16 0.35 -1.29 16 2 C 0.13 1.55 2.98 -69.08 -0.21 1.35 16 3 H 0.12 1.46 7.58 -51.93 -0.39 1.07 16 4 N -0.71 -8.16 4.90 -55.88 -0.27 -8.44 16 5 C 0.56 6.94 7.74 -12.33 -0.10 6.84 16 6 O -0.54 -8.03 16.01 5.32 0.09 -7.94 16 7 C -0.13 -1.38 5.87 -104.97 -0.62 -1.99 16 8 C -0.08 -0.71 9.54 -39.19 -0.37 -1.08 16 9 C -0.13 -0.90 10.03 -39.64 -0.40 -1.30 16 10 C -0.10 -0.62 10.04 -39.49 -0.40 -1.02 16 11 C -0.13 -0.93 10.03 -39.64 -0.40 -1.33 16 12 C -0.06 -0.55 9.60 -39.19 -0.38 -0.93 16 13 C 0.51 8.00 7.06 -10.98 -0.08 7.93 16 14 O -0.51 -9.10 12.64 5.57 0.07 -9.03 16 15 N -0.65 -11.35 5.26 -11.40 -0.06 -11.41 16 16 C 0.38 8.44 7.51 -154.99 -1.16 7.28 16 17 C -0.31 -6.72 8.83 -38.89 -0.34 -7.06 16 18 C -0.04 -0.79 10.15 -39.39 -0.40 -1.19 16 19 C -0.28 -6.45 9.83 -38.66 -0.38 -6.83 16 20 C 0.27 7.06 6.27 -85.00 -0.53 6.53 16 21 C -0.48 -12.83 9.51 -37.73 -0.36 -13.19 16 22 H 0.08 2.25 8.06 -52.49 -0.42 1.82 16 23 C 0.05 1.30 5.51 -17.35 -0.10 1.20 16 24 N -0.80 -21.41 13.65 55.55 0.76 -20.65 16 25 Si 1.14 27.22 25.93 -169.99 -4.41 22.82 16 26 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 27 H -0.28 -6.86 6.55 56.52 0.37 -6.49 16 28 H -0.33 -7.66 7.11 56.52 0.40 -7.26 16 29 N -0.59 -14.68 5.06 -10.26 -0.05 -14.73 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.72 7.70 -51.93 -0.40 0.32 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.41 4.34 5.83 -40.82 -0.24 4.11 16 34 H 0.13 0.94 6.41 -52.48 -0.34 0.61 16 35 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 36 H 0.13 0.52 8.06 -52.49 -0.42 0.09 16 37 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.14 1.26 7.65 -52.49 -0.40 0.86 16 39 H 0.41 6.29 8.42 -40.82 -0.34 5.95 16 40 H 0.14 2.82 5.33 -52.50 -0.28 2.54 16 41 H 0.11 1.91 8.06 -52.49 -0.42 1.49 16 42 H 0.11 2.30 8.06 -52.49 -0.42 1.88 16 43 H 0.28 7.28 8.73 -40.82 -0.36 6.93 16 LS Contribution 366.38 15.07 5.52 5.52 Total: -1.00 -31.92 366.38 -9.18 -41.10 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -4.96 Total: 8.84 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -5.86 Total: -6.08 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: 0.37 Total: -55.23 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: 0.16 Total: -16.97 kcal Atomic # 14 Polarization: 27.22 SS G_CDS: -4.41 Total: 22.82 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.92 -9.18 -41.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363752940.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.236 kcal (2) G-P(sol) polarization free energy of solvation -31.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds