Wall clock time and date at job start Sat Apr 11 2020 05:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46961 * 2 1 4 4 N 1.46498 * 109.47043 * 120.00009 * 2 1 3 5 5 C 1.34773 * 120.00074 * 274.99638 * 4 2 1 6 6 O 1.21550 * 120.00277 * 0.02562 * 5 4 2 7 7 C 1.47849 * 120.00142 * 180.02562 * 5 4 2 8 8 C 1.39575 * 120.14483 * 359.72424 * 7 5 4 9 9 C 1.37953 * 119.85397 * 179.79310 * 8 7 5 10 10 C 1.38360 * 120.14575 * 0.48553 * 9 8 7 11 11 C 1.38362 * 120.28897 * 359.74812 * 10 9 8 12 12 C 1.37952 * 120.14833 * 0.02562 * 11 10 9 13 13 C 1.50707 * 109.47375 * 240.00017 * 2 1 3 14 14 O 1.21267 * 120.00003 * 240.00283 * 13 2 1 15 15 N 1.34774 * 119.99811 * 59.99618 * 13 2 1 16 16 C 1.39260 * 119.99923 * 185.58392 * 15 13 2 17 17 C 1.39670 * 119.57787 * 18.83541 * 16 15 13 18 18 C 1.38658 * 119.50057 * 180.02562 * 17 16 15 19 19 C 1.38346 * 118.66468 * 359.97438 * 18 17 16 20 20 C 1.40570 * 119.13295 * 0.02562 * 19 18 17 21 21 C 1.41344 * 119.79081 * 179.97438 * 20 19 18 22 22 H 1.08001 * 119.99765 * 8.92929 * 21 20 19 23 23 C 1.40027 * 120.00299 * 188.93332 * 21 20 19 24 24 N 1.30738 * 119.99887 * 196.06764 * 23 21 20 25 25 Si 1.86804 * 119.99942 * 16.07189 * 23 21 20 26 26 H 1.48500 * 109.46803 * 270.00144 * 25 23 21 27 27 H 1.48493 * 109.47173 * 29.99762 * 25 23 21 28 28 H 1.48498 * 109.46809 * 149.99998 * 25 23 21 29 29 N 1.31906 * 119.57496 * 199.12757 * 16 15 13 30 30 H 1.09000 * 109.47339 * 300.00146 * 1 2 3 31 31 H 1.09001 * 109.46918 * 59.99990 * 1 2 3 32 32 H 1.09002 * 109.46961 * 180.02562 * 1 2 3 33 33 H 0.97005 * 120.00079 * 95.00072 * 4 2 1 34 34 H 1.08006 * 120.07095 * 0.02562 * 8 7 5 35 35 H 1.08003 * 119.92787 * 180.23263 * 9 8 7 36 36 H 1.08001 * 119.85409 * 179.72127 * 10 9 8 37 37 H 1.07999 * 119.92554 * 179.97438 * 11 10 9 38 38 H 1.08001 * 120.07830 * 179.97438 * 12 11 10 39 39 H 0.96996 * 119.99948 * 5.58649 * 15 13 2 40 40 H 1.08002 * 120.24653 * 0.03972 * 17 16 15 41 41 H 1.07996 * 120.66667 * 179.97438 * 18 17 16 42 42 H 1.08001 * 120.43032 * 180.02562 * 19 18 17 43 43 H 0.97003 * 119.99811 * 354.93238 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0183 2.3571 6 8 1.8576 1.1610 2.4118 7 6 2.6404 -0.7151 3.5641 8 6 2.9682 -2.0706 3.5062 9 6 3.4320 -2.7138 4.6350 10 6 3.5631 -2.0206 5.8253 11 6 3.2352 -0.6780 5.8907 12 6 2.7747 -0.0217 4.7681 13 6 2.0324 -0.7104 -1.2305 14 8 2.7296 -1.6964 -1.1192 15 7 1.7068 -0.2500 -2.4546 16 6 2.0722 -0.9699 -3.5892 17 6 2.4093 -2.3201 -3.4701 18 6 2.7735 -3.0353 -4.6008 19 6 2.7909 -2.3837 -5.8211 20 6 2.4410 -1.0233 -5.8756 21 6 2.4546 -0.3438 -7.1149 22 1 2.5911 -0.8969 -8.0325 23 6 2.2913 1.0464 -7.1531 24 7 1.9902 1.6385 -8.2791 25 14 2.5038 2.0549 -5.5950 26 1 1.1976 2.1697 -4.8979 27 1 3.4841 1.3862 -4.7024 28 1 2.9983 3.4102 -5.9464 29 7 2.1011 -0.3666 -4.7618 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.2490 -1.6318 1.1526 34 1 2.8625 -2.6138 2.5787 35 1 3.6896 -3.7617 4.5906 36 1 3.9224 -2.5299 6.7073 37 1 3.3394 -0.1428 6.8230 38 1 2.5187 1.0262 4.8205 39 1 1.2179 0.5829 -2.5452 40 1 2.3864 -2.8034 -2.5045 41 1 3.0381 -4.0799 -4.5303 42 1 3.0697 -2.9134 -6.7201 43 1 1.9521 1.1257 -9.1016 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363752940.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:18 Heat of formation + Delta-G solvation = -34.178281 kcal Electronic energy + Delta-G solvation = -27921.172048 eV Core-core repulsion = 23930.089101 eV Total energy + Delta-G solvation = -3991.082947 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.09980 -41.15221 -39.99955 -39.16604 -36.48729 -36.19366 -35.42996 -33.13516 -32.95909 -31.89360 -31.58803 -30.60355 -27.39120 -26.22129 -24.96478 -23.70944 -23.54430 -23.11234 -21.53195 -21.39557 -20.37601 -19.70402 -18.78063 -17.91859 -17.38289 -17.11612 -16.88352 -16.72197 -16.34463 -16.06754 -15.98277 -15.54471 -15.48953 -15.14225 -14.93233 -14.70548 -14.39936 -14.29991 -14.24178 -13.93668 -13.72033 -13.56174 -13.37400 -12.99282 -12.83545 -12.63079 -12.52308 -12.19959 -12.01907 -11.87745 -11.61094 -11.18366 -11.06176 -10.88273 -10.43962 -10.37564 -9.95253 -9.91928 -9.86199 -9.32982 -9.25050 -6.80210 -0.16428 0.41806 0.44061 0.75804 1.37552 1.44509 1.52807 1.69532 1.79458 1.96456 2.15126 2.38366 2.62208 2.89398 3.21796 3.56223 3.60908 3.88328 3.91452 3.99685 4.02701 4.07490 4.25092 4.38247 4.47064 4.51678 4.57973 4.63589 4.69273 4.70947 4.76644 4.86010 5.06255 5.10917 5.13185 5.32524 5.34614 5.38577 5.40726 5.45073 5.51406 5.71691 5.78820 5.92932 5.94853 6.20822 6.32904 6.40313 6.63125 6.85629 7.00517 7.51363 7.92859 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020573 B = 0.002491 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.652846 B =11238.092215 C =12123.866926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.136 3.864 3 H 0.121 0.879 4 N -0.703 5.703 5 C 0.563 3.437 6 O -0.570 6.570 7 C -0.157 4.157 8 C -0.089 4.089 9 C -0.130 4.130 10 C -0.089 4.089 11 C -0.131 4.131 12 C -0.076 4.076 13 C 0.521 3.479 14 O -0.530 6.530 15 N -0.644 5.644 16 C 0.372 3.628 17 C -0.304 4.304 18 C -0.030 4.030 19 C -0.293 4.293 20 C 0.258 3.742 21 C -0.512 4.512 22 H 0.069 0.931 23 C 0.021 3.979 24 N -0.824 5.824 25 Si 1.172 2.828 26 H -0.269 1.269 27 H -0.292 1.292 28 H -0.323 1.323 29 N -0.607 5.607 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.415 0.585 34 H 0.137 0.863 35 H 0.154 0.846 36 H 0.157 0.843 37 H 0.152 0.848 38 H 0.127 0.873 39 H 0.420 0.580 40 H 0.153 0.847 41 H 0.144 0.856 42 H 0.114 0.886 43 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.676 -6.916 27.439 28.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.027 3.973 3 H 0.139 0.861 4 N -0.357 5.357 5 C 0.352 3.648 6 O -0.450 6.450 7 C -0.160 4.160 8 C -0.108 4.108 9 C -0.148 4.148 10 C -0.107 4.107 11 C -0.149 4.149 12 C -0.095 4.095 13 C 0.308 3.692 14 O -0.406 6.406 15 N -0.291 5.291 16 C 0.140 3.860 17 C -0.328 4.328 18 C -0.054 4.054 19 C -0.315 4.315 20 C 0.133 3.867 21 C -0.544 4.544 22 H 0.087 0.913 23 C -0.196 4.196 24 N -0.447 5.447 25 Si 1.002 2.998 26 H -0.195 1.195 27 H -0.220 1.220 28 H -0.255 1.255 29 N -0.332 5.332 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.091 0.909 33 H 0.255 0.745 34 H 0.155 0.845 35 H 0.171 0.829 36 H 0.175 0.825 37 H 0.170 0.830 38 H 0.145 0.855 39 H 0.258 0.742 40 H 0.170 0.830 41 H 0.162 0.838 42 H 0.132 0.868 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.770 -4.457 27.959 28.322 hybrid contribution 0.237 -2.339 -1.856 2.995 sum -0.534 -6.796 26.103 26.978 Atomic orbital electron populations 1.22143 0.90345 1.04136 1.04703 1.20730 0.97290 0.97697 0.81557 0.86093 1.45636 1.67016 1.15101 1.07918 1.18617 0.76622 0.86044 0.83482 1.90752 1.51923 1.16804 1.85561 1.19864 1.07010 0.95464 0.93678 1.21574 0.96402 0.92683 1.00153 1.21500 0.99308 1.01683 0.92305 1.21823 0.95839 0.94206 0.98848 1.21475 0.99201 0.95490 0.98685 1.21401 0.95964 1.00426 0.91676 1.20996 0.79189 0.84691 0.84306 1.90593 1.36904 1.26901 1.86201 1.43190 1.55727 1.26448 1.03689 1.18413 0.93225 0.88845 0.85518 1.21860 1.16540 0.93347 1.01071 1.21337 0.93107 0.99598 0.91335 1.21792 1.14913 0.96136 0.98626 1.18361 0.87766 0.90804 0.89791 1.20655 1.46027 0.94953 0.92796 0.91308 1.28406 0.87883 0.97644 1.05701 1.70636 1.30776 1.42205 1.01107 0.81755 0.78636 0.69665 0.69729 1.19524 1.21967 1.25537 1.66150 1.29658 1.38467 0.98911 0.90258 0.89294 0.90879 0.74525 0.84533 0.82861 0.82537 0.82982 0.85467 0.74177 0.83020 0.83803 0.86830 0.90687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.39 71.98 0.68 -2.16 16 2 C 0.14 3.09 2.98 44.25 0.13 3.22 16 3 H 0.12 2.80 7.58 -2.39 -0.02 2.78 16 4 N -0.70 -15.32 4.90 -448.98 -2.20 -17.52 16 5 C 0.56 13.56 7.74 86.79 0.67 14.23 16 6 O -0.57 -17.05 16.01 -3.87 -0.06 -17.12 16 7 C -0.16 -3.11 5.87 -20.09 -0.12 -3.23 16 8 C -0.09 -1.36 9.54 22.53 0.21 -1.14 16 9 C -0.13 -1.45 10.03 22.23 0.22 -1.23 16 10 C -0.09 -0.86 10.04 22.33 0.22 -0.64 16 11 C -0.13 -1.57 10.03 22.23 0.22 -1.35 16 12 C -0.08 -1.35 9.60 22.53 0.22 -1.13 16 13 C 0.52 15.16 7.06 87.66 0.62 15.78 16 14 O -0.53 -17.66 12.64 -2.99 -0.04 -17.70 16 15 N -0.64 -21.40 5.26 -308.38 -1.62 -23.02 16 16 C 0.37 15.83 7.51 133.25 1.00 16.83 16 17 C -0.30 -12.39 8.83 22.72 0.20 -12.19 16 18 C -0.03 -1.19 10.15 22.40 0.23 -0.96 16 19 C -0.29 -13.47 9.83 22.86 0.22 -13.25 16 20 C 0.26 13.37 6.27 40.19 0.25 13.62 16 21 C -0.51 -28.22 9.51 23.47 0.22 -28.00 16 22 H 0.07 3.86 8.06 -2.91 -0.02 3.83 16 23 C 0.02 1.17 5.51 85.29 0.47 1.64 16 24 N -0.82 -45.28 13.65 21.84 0.30 -44.99 16 25 Si 1.17 55.40 25.93 68.60 1.78 57.18 16 26 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 27 H -0.29 -14.17 6.55 99.48 0.65 -13.52 16 28 H -0.32 -14.96 7.11 99.48 0.71 -14.26 16 29 N -0.61 -29.61 5.06 -186.36 -0.94 -30.56 16 30 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.09 1.44 7.70 -2.39 -0.02 1.42 16 32 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.42 8.13 5.83 -92.70 -0.54 7.59 16 34 H 0.14 1.74 6.41 -2.91 -0.02 1.72 16 35 H 0.15 0.93 8.06 -2.91 -0.02 0.91 16 36 H 0.16 0.56 8.06 -2.91 -0.02 0.54 16 37 H 0.15 1.05 8.06 -2.91 -0.02 1.02 16 38 H 0.13 2.40 7.65 -2.91 -0.02 2.38 16 39 H 0.42 12.10 8.42 -92.71 -0.78 11.32 16 40 H 0.15 5.78 5.33 -3.17 -0.02 5.76 16 41 H 0.14 4.63 8.06 -2.91 -0.02 4.60 16 42 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 43 H 0.28 15.03 8.73 -92.71 -0.81 14.22 16 Total: -1.00 -69.35 366.38 2.55 -66.79 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: -0.34 Total: 26.88 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 5.68 Total: 0.04 kcal Atomic # 7 Polarization: -111.61 SS G_CDS: -4.47 Total: -116.08 kcal Atomic # 8 Polarization: -34.71 SS G_CDS: -0.10 Total: -34.81 kcal Atomic # 14 Polarization: 55.40 SS G_CDS: 1.78 Total: 57.18 kcal Total: -69.35 2.55 -66.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363752940.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.616 kcal (2) G-P(sol) polarization free energy of solvation -69.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds