Wall clock time and date at job start Sat Apr 11 2020 05:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47384 * 2 1 4 4 N 1.46504 * 109.46865 * 239.99866 * 2 1 3 5 5 C 1.34780 * 119.99333 * 85.00552 * 4 2 1 6 6 O 1.21550 * 120.00442 * 359.97438 * 5 4 2 7 7 C 1.47852 * 119.99666 * 179.97438 * 5 4 2 8 8 C 1.39578 * 120.14046 * 359.72243 * 7 5 4 9 9 C 1.37962 * 119.84948 * 179.79145 * 8 7 5 10 10 C 1.38363 * 120.14296 * 0.48293 * 9 8 7 11 11 C 1.38359 * 120.29156 * 359.75036 * 10 9 8 12 12 C 1.37956 * 120.14759 * 0.02562 * 11 10 9 13 13 C 1.50709 * 109.47009 * 120.00658 * 2 1 3 14 14 O 1.21265 * 120.00142 * 119.99799 * 13 2 1 15 15 N 1.34772 * 119.99565 * 299.99508 * 13 2 1 16 16 C 1.39266 * 119.99755 * 183.70798 * 15 13 2 17 17 C 1.39672 * 119.57754 * 339.10832 * 16 15 13 18 18 C 1.38650 * 119.49953 * 180.02562 * 17 16 15 19 19 C 1.38343 * 118.67135 * 0.02562 * 18 17 16 20 20 C 1.40586 * 119.12855 * 359.97438 * 19 18 17 21 21 C 1.41330 * 119.78775 * 180.02562 * 20 19 18 22 22 H 1.07997 * 120.00239 * 5.12744 * 21 20 19 23 23 C 1.40030 * 120.00125 * 185.13244 * 21 20 19 24 24 N 1.30737 * 120.00377 * 184.82330 * 23 21 20 25 25 Si 1.86801 * 119.99899 * 4.81946 * 23 21 20 26 26 H 1.48493 * 109.47218 * 180.02562 * 25 23 21 27 27 H 1.48504 * 109.47124 * 300.00190 * 25 23 21 28 28 H 1.48494 * 109.47195 * 59.99763 * 25 23 21 29 29 N 1.31914 * 119.57443 * 159.41263 * 16 15 13 30 30 H 1.09002 * 109.47033 * 59.99549 * 1 2 3 31 31 H 1.08995 * 109.47384 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46501 * 299.99686 * 1 2 3 33 33 H 0.96997 * 120.00028 * 264.99879 * 4 2 1 34 34 H 1.07995 * 120.07828 * 359.97438 * 8 7 5 35 35 H 1.07994 * 119.92802 * 180.22999 * 9 8 7 36 36 H 1.08002 * 119.85481 * 179.72251 * 10 9 8 37 37 H 1.08004 * 119.92608 * 180.02562 * 11 10 9 38 38 H 1.08000 * 120.07554 * 179.97438 * 12 11 10 39 39 H 0.97001 * 120.00497 * 3.70377 * 15 13 2 40 40 H 1.08000 * 120.24611 * 0.02562 * 17 16 15 41 41 H 1.07999 * 120.66575 * 179.97438 * 18 17 16 42 42 H 1.07991 * 120.43876 * 180.02562 * 19 18 17 43 43 H 0.97002 * 120.00443 * 354.98587 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1470 -0.0182 -2.3571 6 8 1.8576 1.1611 -2.4118 7 6 2.6403 -0.7150 -3.5642 8 6 2.9790 -2.0677 -3.5034 9 6 3.4346 -2.7130 -4.6345 10 6 3.5656 -2.0198 -5.8247 11 6 3.2362 -0.6776 -5.8905 12 6 2.7750 -0.0215 -4.7680 13 6 2.0323 -0.7106 1.2305 14 8 2.7295 -1.6966 1.1191 15 7 1.7068 -0.2502 2.4545 16 6 2.2333 -0.8599 3.5905 17 6 2.7199 -2.1665 3.5089 18 6 3.2433 -2.7722 4.6410 19 6 3.2667 -2.0576 5.8253 20 6 2.7618 -0.7456 5.8431 21 6 2.7793 -0.0028 7.0453 22 1 3.2539 -0.4109 7.9254 23 6 2.1812 1.2623 7.0954 24 7 2.2787 1.9892 8.1778 25 14 1.2439 1.9116 5.6158 26 1 0.7111 3.2635 5.9216 27 1 2.1574 1.9926 4.4477 28 1 0.1187 0.9950 5.3014 29 7 2.2605 -0.1980 4.7313 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3632 0.5138 0.8901 33 1 2.2490 -1.6318 -1.1526 34 1 2.8819 -2.6087 -2.5738 35 1 3.6935 -3.7605 -4.5898 36 1 3.9269 -2.5285 -6.7063 37 1 3.3402 -0.1423 -6.8228 38 1 2.5186 1.0263 -4.8205 39 1 1.1058 0.5059 2.5444 40 1 2.6888 -2.7010 2.5709 41 1 3.6243 -3.7818 4.5993 42 1 3.6683 -2.5014 6.7242 43 1 2.7020 1.6243 8.9706 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363752944.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:22 Heat of formation + Delta-G solvation = -12.588340 kcal Electronic energy + Delta-G solvation = -27935.520237 eV Core-core repulsion = 23945.373500 eV Total energy + Delta-G solvation = -3990.146737 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.90114 -40.07727 -38.69081 -38.11614 -35.29810 -34.77951 -33.61194 -32.27627 -31.30211 -31.19276 -30.46453 -29.24490 -25.66841 -25.11222 -23.98433 -22.89538 -22.06041 -21.76820 -20.59728 -20.00561 -18.91758 -18.27728 -17.49555 -16.89844 -16.22318 -16.12187 -15.59221 -15.39850 -15.11853 -14.99328 -14.79460 -14.39024 -14.16844 -13.95262 -13.71805 -13.66983 -13.23500 -13.00870 -12.86571 -12.59715 -12.54503 -12.29646 -12.04437 -11.96993 -11.81800 -11.46620 -11.19655 -10.90580 -10.38644 -10.23730 -10.11819 -9.73478 -9.59010 -9.37823 -9.33827 -9.24432 -9.16985 -8.62968 -7.80965 -7.57741 -7.28064 -4.84044 0.50049 0.99153 2.03983 2.52047 2.57409 2.63838 2.89330 3.25363 3.49067 3.54715 3.59495 3.92771 4.31007 4.34233 4.44068 4.50860 4.56241 4.57442 4.75077 4.81912 4.93634 4.99880 5.10586 5.35603 5.41062 5.45543 5.54574 5.60222 5.78280 5.88574 5.93591 5.97061 6.01532 6.05593 6.06949 6.36123 6.44337 6.46599 6.49452 7.02231 7.08540 7.22533 7.36996 7.45051 7.52615 7.67471 7.91753 8.03191 8.14146 8.30310 8.58104 9.32152 9.94505 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020652 B = 0.002501 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.449333 B =11192.413832 C =12152.129954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.127 3.873 3 H 0.121 0.879 4 N -0.707 5.707 5 C 0.563 3.437 6 O -0.536 6.536 7 C -0.133 4.133 8 C -0.083 4.083 9 C -0.128 4.128 10 C -0.095 4.095 11 C -0.130 4.130 12 C -0.059 4.059 13 C 0.515 3.485 14 O -0.511 6.511 15 N -0.645 5.645 16 C 0.383 3.617 17 C -0.313 4.313 18 C -0.036 4.036 19 C -0.274 4.274 20 C 0.272 3.728 21 C -0.474 4.474 22 H 0.084 0.916 23 C 0.042 3.958 24 N -0.803 5.803 25 Si 1.153 2.847 26 H -0.331 1.331 27 H -0.280 1.280 28 H -0.294 1.294 29 N -0.597 5.597 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.410 0.590 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.137 0.863 39 H 0.409 0.591 40 H 0.145 0.855 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.754 -6.456 -23.970 24.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.019 3.981 3 H 0.139 0.861 4 N -0.361 5.361 5 C 0.351 3.649 6 O -0.414 6.414 7 C -0.136 4.136 8 C -0.102 4.102 9 C -0.146 4.146 10 C -0.113 4.113 11 C -0.148 4.148 12 C -0.078 4.078 13 C 0.300 3.700 14 O -0.387 6.387 15 N -0.290 5.290 16 C 0.152 3.848 17 C -0.338 4.338 18 C -0.060 4.060 19 C -0.296 4.296 20 C 0.148 3.852 21 C -0.506 4.506 22 H 0.102 0.898 23 C -0.179 4.179 24 N -0.424 5.424 25 Si 0.988 3.012 26 H -0.265 1.265 27 H -0.207 1.207 28 H -0.222 1.222 29 N -0.323 5.323 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.248 0.752 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.145 0.855 37 H 0.147 0.853 38 H 0.155 0.845 39 H 0.245 0.755 40 H 0.162 0.838 41 H 0.124 0.876 42 H 0.124 0.876 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.509 -4.191 -24.461 24.944 hybrid contribution 1.227 -2.374 1.058 2.874 sum -1.282 -6.566 -23.403 24.341 Atomic orbital electron populations 1.22177 0.92303 1.03542 1.04057 1.20776 0.96023 0.98287 0.83044 0.86123 1.45645 1.67221 1.14920 1.08298 1.18260 0.77370 0.86386 0.82904 1.90781 1.50211 1.15367 1.85003 1.19897 1.04956 0.94555 0.94229 1.21419 0.96367 0.93391 0.99037 1.21147 1.00275 1.00457 0.92674 1.21410 0.97394 0.94530 0.97994 1.21179 1.00131 0.94903 0.98588 1.21306 0.94994 1.00498 0.91026 1.20466 0.80367 0.84892 0.84250 1.90583 1.37108 1.25149 1.85815 1.43143 1.46979 1.34532 1.04334 1.18098 0.92786 0.88717 0.85158 1.21694 1.15643 0.95382 1.01078 1.20952 0.94843 0.97754 0.92469 1.21629 1.12990 0.97108 0.97922 1.18267 0.87415 0.89876 0.89635 1.20741 1.31408 1.02391 0.96026 0.89810 1.27800 0.93886 0.92937 1.03310 1.70642 1.31487 1.37395 1.02923 0.81872 0.75319 0.71680 0.72298 1.26454 1.20742 1.22199 1.65999 1.30682 1.36123 0.99457 0.90416 0.91396 0.90471 0.75161 0.85279 0.85246 0.85546 0.85263 0.84543 0.75502 0.83811 0.87551 0.87626 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.38 37.16 0.35 -1.27 16 2 C 0.13 1.55 2.99 -69.08 -0.21 1.35 16 3 H 0.12 1.51 7.58 -51.93 -0.39 1.11 16 4 N -0.71 -8.13 4.90 -55.87 -0.27 -8.41 16 5 C 0.56 6.94 7.74 -12.32 -0.10 6.85 16 6 O -0.54 -8.05 16.01 5.32 0.09 -7.96 16 7 C -0.13 -1.37 5.87 -104.97 -0.62 -1.99 16 8 C -0.08 -0.71 9.54 -39.18 -0.37 -1.08 16 9 C -0.13 -0.90 10.03 -39.64 -0.40 -1.29 16 10 C -0.10 -0.62 10.04 -39.49 -0.40 -1.01 16 11 C -0.13 -0.93 10.03 -39.64 -0.40 -1.33 16 12 C -0.06 -0.55 9.60 -39.19 -0.38 -0.93 16 13 C 0.51 7.99 7.12 -10.98 -0.08 7.91 16 14 O -0.51 -8.98 12.50 5.57 0.07 -8.91 16 15 N -0.65 -11.37 5.33 -11.40 -0.06 -11.43 16 16 C 0.38 8.48 7.51 -154.97 -1.16 7.32 16 17 C -0.31 -6.76 8.90 -38.89 -0.35 -7.11 16 18 C -0.04 -0.77 10.15 -39.39 -0.40 -1.17 16 19 C -0.27 -6.41 9.83 -38.66 -0.38 -6.79 16 20 C 0.27 7.03 6.40 -85.00 -0.54 6.49 16 21 C -0.47 -12.74 9.57 -37.74 -0.36 -13.10 16 22 H 0.08 2.25 8.05 -52.49 -0.42 1.82 16 23 C 0.04 1.13 5.52 -17.35 -0.10 1.03 16 24 N -0.80 -21.62 13.65 55.55 0.76 -20.87 16 25 Si 1.15 27.33 25.61 -169.99 -4.35 22.98 16 26 H -0.33 -7.80 7.11 56.52 0.40 -7.40 16 27 H -0.28 -6.52 6.61 56.52 0.37 -6.14 16 28 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 29 N -0.60 -14.79 4.54 -10.25 -0.05 -14.83 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.69 7.49 -51.93 -0.39 0.30 16 33 H 0.41 4.30 5.82 -40.82 -0.24 4.06 16 34 H 0.13 0.93 6.41 -52.49 -0.34 0.60 16 35 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 36 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 37 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 38 H 0.14 1.27 7.65 -52.49 -0.40 0.86 16 39 H 0.41 6.33 8.14 -40.82 -0.33 6.00 16 40 H 0.14 2.97 5.17 -52.92 -0.27 2.69 16 41 H 0.11 1.91 8.06 -52.49 -0.42 1.49 16 42 H 0.11 2.30 8.06 -52.49 -0.42 1.88 16 43 H 0.28 7.30 8.72 -40.82 -0.36 6.95 16 LS Contribution 365.17 15.07 5.50 5.50 Total: -1.00 -32.04 365.17 -9.12 -41.17 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -4.93 Total: 8.91 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -5.88 Total: -6.14 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: 0.38 Total: -55.54 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: 0.15 Total: -16.88 kcal Atomic # 14 Polarization: 27.33 SS G_CDS: -4.35 Total: 22.98 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.04 -9.12 -41.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363752944.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.578 kcal (2) G-P(sol) polarization free energy of solvation -32.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds