Wall clock time and date at job start Sat Apr 11 2020 05:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34774 * 119.99497 * 2 1 4 4 O 1.21277 * 120.00495 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99646 * 180.02562 * 3 2 1 6 6 C 1.52996 * 109.47231 * 180.02562 * 5 3 2 7 7 H 1.08994 * 109.47392 * 55.00131 * 6 5 3 8 8 C 1.53001 * 109.47397 * 175.00262 * 6 5 3 9 9 N 1.46504 * 109.47077 * 295.00158 * 6 5 3 10 10 C 1.34778 * 120.00326 * 154.99888 * 9 6 5 11 11 O 1.21601 * 119.99616 * 0.02562 * 10 9 6 12 12 N 1.34774 * 120.00269 * 179.97438 * 10 9 6 13 13 C 1.40137 * 119.99814 * 174.32949 * 12 10 9 14 14 C 1.38690 * 120.07664 * 335.23292 * 13 12 10 15 15 C 1.38203 * 120.01863 * 179.76735 * 14 13 12 16 16 C 1.38541 * 120.17212 * 0.51089 * 15 14 13 17 17 F 1.35104 * 119.92113 * 179.76612 * 16 15 14 18 18 C 1.38339 * 120.15342 * 359.74340 * 16 15 14 19 19 C 1.38739 * 119.98071 * 0.02562 * 18 16 15 20 20 O 1.35777 * 120.08910 * 179.97438 * 19 18 16 21 21 C 1.34801 * 117.00131 * 5.19811 * 20 19 18 22 22 H 1.08006 * 119.99842 * 354.98020 * 21 20 19 23 23 C 1.38631 * 119.99906 * 174.97858 * 21 20 19 24 24 N 1.31570 * 120.00481 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99935 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47218 * 89.99956 * 25 23 21 27 27 H 1.48496 * 109.47243 * 209.99695 * 25 23 21 28 28 H 1.48502 * 109.47335 * 330.00267 * 25 23 21 29 29 H 1.08999 * 109.47508 * 59.72086 * 1 2 3 30 30 H 1.09001 * 109.46952 * 179.71946 * 1 2 3 31 31 H 1.09000 * 109.47030 * 299.72113 * 1 2 3 32 32 H 0.96999 * 119.99898 * 180.28061 * 2 1 3 33 33 H 1.08997 * 109.47106 * 300.00223 * 5 3 2 34 34 H 1.08996 * 109.46914 * 60.00110 * 5 3 2 35 35 H 1.09005 * 109.46868 * 299.99961 * 8 6 5 36 36 H 1.08994 * 109.46956 * 59.99602 * 8 6 5 37 37 H 1.08999 * 109.47218 * 179.97438 * 8 6 5 38 38 H 0.97000 * 119.99726 * 334.99676 * 9 6 5 39 39 H 0.96998 * 119.99919 * 354.33985 * 12 10 9 40 40 H 1.08002 * 119.99040 * 0.02805 * 14 13 12 41 41 H 1.08002 * 119.90924 * 180.23164 * 15 14 13 42 42 H 1.08005 * 120.00911 * 180.02562 * 18 16 15 43 43 H 0.96996 * 120.00276 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5324 2.2175 0.0005 5 6 3.6458 1.1673 -0.0006 6 6 4.1558 2.6097 0.0002 7 1 3.7216 3.1482 0.8425 8 6 5.6807 2.6116 0.1253 9 7 3.7677 3.2656 -1.2510 10 6 3.6408 4.6066 -1.2979 11 8 3.8489 5.2721 -0.3017 12 7 3.2843 5.2099 -2.4491 13 6 3.0366 6.5891 -2.4698 14 6 2.6512 7.2435 -1.3094 15 6 2.4119 8.6045 -1.3301 16 6 2.5456 9.3171 -2.5107 17 9 2.3058 10.6466 -2.5262 18 6 2.9245 8.6706 -3.6735 19 6 3.1710 7.3053 -3.6589 20 8 3.5425 6.6685 -4.7990 21 6 3.7585 7.4358 -5.8861 22 1 3.5564 8.4961 -5.8475 23 6 4.2402 6.8640 -7.0535 24 7 4.4870 5.5725 -7.1004 25 14 4.5389 7.9272 -8.5602 26 1 5.9307 8.4443 -8.5331 27 1 4.3363 7.1153 -9.7869 28 1 3.5873 9.0672 -8.5582 29 1 -0.3634 0.5181 -0.8874 30 1 -0.3633 -1.0277 -0.0050 31 1 -0.3633 0.5095 0.8925 32 1 1.9500 -0.8400 -0.0041 33 1 4.0095 0.6532 0.8891 34 1 4.0088 0.6537 -0.8908 35 1 5.9695 2.1236 1.0562 36 1 6.1149 2.0731 -0.7170 37 1 6.0440 3.6392 0.1253 38 1 3.6021 2.7347 -2.0458 39 1 3.1990 4.6895 -3.2632 40 1 2.5422 6.6902 -0.3883 41 1 2.1155 9.1131 -0.4246 42 1 3.0284 9.2285 -4.5925 43 1 4.8244 5.1725 -7.9171 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001425407490.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:25 Heat of formation + Delta-G solvation = -107.377450 kcal Electronic energy + Delta-G solvation = -29340.304564 eV Core-core repulsion = 24915.278237 eV Total energy + Delta-G solvation = -4425.026326 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.13998 -40.40015 -39.73512 -38.64907 -36.54384 -35.60097 -34.72334 -33.90144 -32.33854 -31.50430 -29.28077 -28.95657 -27.85420 -26.21475 -25.43126 -22.88641 -21.93571 -21.28278 -20.53451 -20.33735 -18.29926 -18.21005 -17.68156 -17.34090 -16.77189 -16.03165 -15.91089 -15.37632 -15.16757 -15.04310 -14.88259 -14.60660 -14.24186 -14.19834 -13.82824 -13.59020 -13.50896 -13.36057 -13.14650 -12.97349 -12.60400 -12.53134 -12.21099 -12.15366 -12.05279 -11.89523 -11.60534 -11.33686 -11.09443 -10.91636 -10.65109 -10.48321 -10.03372 -9.73955 -9.69229 -9.38744 -9.34773 -8.90065 -8.82574 -7.75643 -6.91515 -6.54261 -4.11230 1.97973 2.23043 2.46899 2.94808 3.01879 3.10061 3.11743 3.15695 3.63071 3.90113 4.42743 4.48129 4.50435 4.59423 4.91589 4.93098 4.97329 5.05294 5.18435 5.22850 5.24611 5.35118 5.42488 5.54432 5.63206 5.69634 5.83926 5.98246 6.11431 6.13972 6.22569 6.33360 6.66340 6.76652 6.79530 7.01067 7.06728 7.17824 7.18816 7.27154 7.43074 7.78434 7.90745 8.03420 8.41570 8.92058 9.01238 9.55145 10.63354 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010182 B = 0.003191 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.165224 B = 8773.778504 C =10213.200094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.742 5.742 3 C 0.504 3.496 4 O -0.516 6.516 5 C -0.151 4.151 6 C 0.178 3.822 7 H 0.096 0.904 8 C -0.166 4.166 9 N -0.733 5.733 10 C 0.712 3.288 11 O -0.584 6.584 12 N -0.665 5.665 13 C 0.090 3.910 14 C -0.064 4.064 15 C -0.222 4.222 16 C 0.120 3.880 17 F -0.153 7.153 18 C -0.256 4.256 19 C 0.152 3.848 20 O -0.173 6.173 21 C -0.390 4.390 22 H 0.094 0.906 23 C 0.042 3.958 24 N -0.863 5.863 25 Si 0.941 3.059 26 H -0.273 1.273 27 H -0.277 1.277 28 H -0.266 1.266 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.400 0.600 33 H 0.108 0.892 34 H 0.100 0.900 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.393 0.607 39 H 0.412 0.588 40 H 0.150 0.850 41 H 0.122 0.878 42 H 0.142 0.858 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.245 -14.282 11.678 18.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.395 5.395 3 C 0.289 3.711 4 O -0.390 6.390 5 C -0.192 4.192 6 C 0.072 3.928 7 H 0.114 0.886 8 C -0.224 4.224 9 N -0.387 5.387 10 C 0.413 3.587 11 O -0.463 6.463 12 N -0.310 5.310 13 C -0.005 4.005 14 C -0.085 4.085 15 C -0.242 4.242 16 C 0.100 3.900 17 F -0.132 7.132 18 C -0.277 4.277 19 C 0.097 3.903 20 O -0.077 6.077 21 C -0.466 4.466 22 H 0.111 0.889 23 C -0.162 4.162 24 N -0.498 5.498 25 Si 0.766 3.234 26 H -0.198 1.198 27 H -0.202 1.202 28 H -0.191 1.191 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.233 0.767 33 H 0.126 0.874 34 H 0.118 0.882 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.226 0.774 39 H 0.247 0.753 40 H 0.168 0.832 41 H 0.140 0.860 42 H 0.160 0.840 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.410 -13.320 12.363 18.333 hybrid contribution 0.213 -0.239 -1.692 1.722 sum -2.197 -13.560 10.670 17.394 Atomic orbital electron populations 1.21516 0.79709 1.01988 1.02486 1.45849 1.07782 1.08724 1.77113 1.20748 0.90316 0.83713 0.76275 1.90816 1.70139 1.30897 1.47175 1.22079 0.92289 0.99415 1.05388 1.20441 0.94262 0.90037 0.88037 0.88581 1.22239 0.95057 1.03498 1.01634 1.44931 1.75219 1.05336 1.13247 1.15731 0.77591 0.81808 0.83548 1.90824 1.57618 1.63266 1.34606 1.42228 1.70587 1.07215 1.11008 1.16710 1.08901 0.82336 0.92586 1.20845 0.96502 0.93401 0.97704 1.20503 1.12442 0.94581 0.96693 1.17445 1.01171 0.76706 0.94676 1.91401 1.92292 1.32119 1.97392 1.20808 1.13303 0.94897 0.98655 1.18690 0.94740 0.89811 0.87107 1.83897 1.74214 1.34628 1.14952 1.21326 1.45110 0.92584 0.87539 0.88909 1.25250 0.96032 0.96475 0.98475 1.70009 1.41299 1.10065 1.28400 0.85695 0.79184 0.79059 0.79463 1.19828 1.20246 1.19084 0.92148 0.90861 0.92304 0.76684 0.87351 0.88213 0.91781 0.92375 0.91215 0.77352 0.75293 0.83232 0.86041 0.84049 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.61 10.70 59.85 0.64 1.25 16 2 N -0.74 -5.16 5.71 -67.07 -0.38 -5.54 16 3 C 0.50 5.14 7.69 -10.98 -0.08 5.06 16 4 O -0.52 -8.01 15.35 5.56 0.09 -7.92 16 5 C -0.15 -1.10 5.24 -27.88 -0.15 -1.25 16 6 C 0.18 2.04 2.13 -67.93 -0.15 1.90 16 7 H 0.10 1.37 7.39 -51.93 -0.38 0.98 16 8 C -0.17 -1.68 9.48 37.16 0.35 -1.32 16 9 N -0.73 -10.36 4.22 -58.67 -0.25 -10.61 16 10 C 0.71 13.36 8.33 -86.92 -0.72 12.63 16 11 O -0.58 -12.40 13.18 5.28 0.07 -12.34 16 12 N -0.66 -13.32 5.30 -14.07 -0.07 -13.39 16 13 C 0.09 2.00 6.45 -83.44 -0.54 1.47 16 14 C -0.06 -1.34 8.71 -39.43 -0.34 -1.69 16 15 C -0.22 -4.44 10.02 -39.48 -0.40 -4.84 16 16 C 0.12 2.54 7.29 -39.43 -0.29 2.25 16 17 F -0.15 -3.09 17.26 2.25 0.04 -3.05 16 18 C -0.26 -5.85 9.14 -39.36 -0.36 -6.21 16 19 C 0.15 3.67 6.66 -38.94 -0.26 3.41 16 20 O -0.17 -4.66 9.17 0.05 0.00 -4.66 16 21 C -0.39 -10.54 9.49 30.88 0.29 -10.24 16 22 H 0.09 2.37 5.20 -52.48 -0.27 2.10 16 23 C 0.04 1.11 5.49 -17.52 -0.10 1.02 16 24 N -0.86 -23.91 13.67 55.48 0.76 -23.15 16 25 Si 0.94 20.12 29.55 -169.99 -5.02 15.09 16 26 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 27 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 28 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.40 1.39 8.83 -40.82 -0.36 1.03 16 33 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.39 4.83 8.62 -40.82 -0.35 4.48 16 39 H 0.41 7.96 8.36 -40.82 -0.34 7.62 16 40 H 0.15 3.16 5.78 -52.49 -0.30 2.86 16 41 H 0.12 2.12 8.06 -52.49 -0.42 1.70 16 42 H 0.14 3.21 5.63 -52.48 -0.30 2.92 16 43 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 372.92 15.07 5.62 5.62 Total: -1.00 -34.80 372.92 -6.50 -41.30 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: -5.25 Total: 15.23 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -2.09 Total: 3.43 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: 0.05 Total: -52.70 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: 0.16 Total: -24.92 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.04 Total: -3.05 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.80 -6.50 -41.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001425407490.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.082 kcal (2) G-P(sol) polarization free energy of solvation -34.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds