Wall clock time and date at job start Sat Apr 11 2020 05:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34774 * 119.99497 * 2 1 4 4 O 1.21277 * 120.00495 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99646 * 180.02562 * 3 2 1 6 6 C 1.52996 * 109.47231 * 180.02562 * 5 3 2 7 7 H 1.08994 * 109.47392 * 55.00131 * 6 5 3 8 8 C 1.53001 * 109.47397 * 175.00262 * 6 5 3 9 9 N 1.46504 * 109.47077 * 295.00158 * 6 5 3 10 10 C 1.34778 * 120.00326 * 154.99888 * 9 6 5 11 11 O 1.21601 * 119.99616 * 0.02562 * 10 9 6 12 12 N 1.34774 * 120.00269 * 179.97438 * 10 9 6 13 13 C 1.40137 * 119.99814 * 174.32949 * 12 10 9 14 14 C 1.38690 * 120.07664 * 335.23292 * 13 12 10 15 15 C 1.38203 * 120.01863 * 179.76735 * 14 13 12 16 16 C 1.38541 * 120.17212 * 0.51089 * 15 14 13 17 17 F 1.35104 * 119.92113 * 179.76612 * 16 15 14 18 18 C 1.38339 * 120.15342 * 359.74340 * 16 15 14 19 19 C 1.38739 * 119.98071 * 0.02562 * 18 16 15 20 20 O 1.35777 * 120.08910 * 179.97438 * 19 18 16 21 21 C 1.34801 * 117.00131 * 5.19811 * 20 19 18 22 22 H 1.08006 * 119.99842 * 354.98020 * 21 20 19 23 23 C 1.38631 * 119.99906 * 174.97858 * 21 20 19 24 24 N 1.31570 * 120.00481 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99935 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47218 * 89.99956 * 25 23 21 27 27 H 1.48496 * 109.47243 * 209.99695 * 25 23 21 28 28 H 1.48502 * 109.47335 * 330.00267 * 25 23 21 29 29 H 1.08999 * 109.47508 * 59.72086 * 1 2 3 30 30 H 1.09001 * 109.46952 * 179.71946 * 1 2 3 31 31 H 1.09000 * 109.47030 * 299.72113 * 1 2 3 32 32 H 0.96999 * 119.99898 * 180.28061 * 2 1 3 33 33 H 1.08997 * 109.47106 * 300.00223 * 5 3 2 34 34 H 1.08996 * 109.46914 * 60.00110 * 5 3 2 35 35 H 1.09005 * 109.46868 * 299.99961 * 8 6 5 36 36 H 1.08994 * 109.46956 * 59.99602 * 8 6 5 37 37 H 1.08999 * 109.47218 * 179.97438 * 8 6 5 38 38 H 0.97000 * 119.99726 * 334.99676 * 9 6 5 39 39 H 0.96998 * 119.99919 * 354.33985 * 12 10 9 40 40 H 1.08002 * 119.99040 * 0.02805 * 14 13 12 41 41 H 1.08002 * 119.90924 * 180.23164 * 15 14 13 42 42 H 1.08005 * 120.00911 * 180.02562 * 18 16 15 43 43 H 0.96996 * 120.00276 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5324 2.2175 0.0005 5 6 3.6458 1.1673 -0.0006 6 6 4.1558 2.6097 0.0002 7 1 3.7216 3.1482 0.8425 8 6 5.6807 2.6116 0.1253 9 7 3.7677 3.2656 -1.2510 10 6 3.6408 4.6066 -1.2979 11 8 3.8489 5.2721 -0.3017 12 7 3.2843 5.2099 -2.4491 13 6 3.0366 6.5891 -2.4698 14 6 2.6512 7.2435 -1.3094 15 6 2.4119 8.6045 -1.3301 16 6 2.5456 9.3171 -2.5107 17 9 2.3058 10.6466 -2.5262 18 6 2.9245 8.6706 -3.6735 19 6 3.1710 7.3053 -3.6589 20 8 3.5425 6.6685 -4.7990 21 6 3.7585 7.4358 -5.8861 22 1 3.5564 8.4961 -5.8475 23 6 4.2402 6.8640 -7.0535 24 7 4.4870 5.5725 -7.1004 25 14 4.5389 7.9272 -8.5602 26 1 5.9307 8.4443 -8.5331 27 1 4.3363 7.1153 -9.7869 28 1 3.5873 9.0672 -8.5582 29 1 -0.3634 0.5181 -0.8874 30 1 -0.3633 -1.0277 -0.0050 31 1 -0.3633 0.5095 0.8925 32 1 1.9500 -0.8400 -0.0041 33 1 4.0095 0.6532 0.8891 34 1 4.0088 0.6537 -0.8908 35 1 5.9695 2.1236 1.0562 36 1 6.1149 2.0731 -0.7170 37 1 6.0440 3.6392 0.1253 38 1 3.6021 2.7347 -2.0458 39 1 3.1990 4.6895 -3.2632 40 1 2.5422 6.6902 -0.3883 41 1 2.1155 9.1131 -0.4246 42 1 3.0284 9.2285 -4.5925 43 1 4.8244 5.1725 -7.9171 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001425407490.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:24 Heat of formation + Delta-G solvation = -133.822746 kcal Electronic energy + Delta-G solvation = -29341.451318 eV Core-core repulsion = 24915.278237 eV Total energy + Delta-G solvation = -4426.173080 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.81356 -41.81645 -40.85849 -40.20781 -38.18687 -36.83609 -35.53278 -35.50391 -34.29860 -32.64999 -31.04070 -29.87816 -29.37209 -27.38725 -26.86317 -24.42308 -23.54690 -22.56542 -21.78263 -21.31498 -20.14612 -19.77545 -19.22676 -18.36358 -18.14456 -17.13664 -17.06881 -16.90223 -16.71749 -16.53566 -16.24091 -15.96373 -15.91876 -15.49936 -15.27912 -15.24215 -14.95643 -14.84555 -14.08216 -13.99350 -13.91375 -13.82164 -13.49738 -13.42254 -13.10276 -13.01832 -12.84184 -12.77443 -12.61139 -12.34284 -12.13134 -11.95446 -11.65623 -11.32792 -10.99656 -10.90252 -10.81231 -10.11900 -10.02991 -9.54062 -8.65737 -8.50316 -6.15763 0.23007 0.45963 1.37241 1.44442 1.52488 1.65378 1.72233 2.10202 2.15192 2.33307 2.72028 3.03058 3.16656 3.23136 3.46226 3.68005 3.88443 3.94259 4.15116 4.26758 4.36568 4.40641 4.52010 4.59258 4.61631 4.67656 4.72916 4.84020 4.95238 4.96400 5.00275 5.07833 5.22193 5.30231 5.34713 5.37837 5.49675 5.56932 5.64299 5.93391 5.96605 6.09308 6.62434 6.94267 6.98116 7.36649 7.51610 7.64644 8.70709 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010182 B = 0.003191 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.165224 B = 8773.778504 C =10213.200094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.724 5.724 3 C 0.496 3.504 4 O -0.580 6.580 5 C -0.137 4.137 6 C 0.171 3.829 7 H 0.064 0.936 8 C -0.158 4.158 9 N -0.717 5.717 10 C 0.706 3.294 11 O -0.612 6.612 12 N -0.669 5.669 13 C 0.089 3.911 14 C -0.068 4.068 15 C -0.199 4.199 16 C 0.116 3.884 17 F -0.144 7.144 18 C -0.259 4.259 19 C 0.127 3.873 20 O -0.204 6.204 21 C -0.416 4.416 22 H 0.099 0.901 23 C -0.009 4.009 24 N -0.906 5.906 25 Si 1.012 2.988 26 H -0.266 1.266 27 H -0.268 1.268 28 H -0.257 1.257 29 H 0.039 0.961 30 H 0.111 0.889 31 H 0.044 0.956 32 H 0.421 0.579 33 H 0.149 0.851 34 H 0.131 0.869 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.031 0.969 38 H 0.403 0.597 39 H 0.412 0.588 40 H 0.152 0.848 41 H 0.156 0.844 42 H 0.139 0.861 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.830 -15.638 12.346 20.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.378 5.378 3 C 0.284 3.716 4 O -0.460 6.460 5 C -0.177 4.177 6 C 0.066 3.934 7 H 0.082 0.918 8 C -0.216 4.216 9 N -0.371 5.371 10 C 0.407 3.593 11 O -0.493 6.493 12 N -0.314 5.314 13 C -0.008 4.008 14 C -0.089 4.089 15 C -0.219 4.219 16 C 0.096 3.904 17 F -0.123 7.123 18 C -0.280 4.280 19 C 0.073 3.927 20 O -0.110 6.110 21 C -0.492 4.492 22 H 0.116 0.884 23 C -0.208 4.208 24 N -0.543 5.543 25 Si 0.832 3.168 26 H -0.191 1.191 27 H -0.193 1.193 28 H -0.181 1.181 29 H 0.058 0.942 30 H 0.129 0.871 31 H 0.063 0.937 32 H 0.258 0.742 33 H 0.167 0.833 34 H 0.149 0.851 35 H 0.114 0.886 36 H 0.092 0.908 37 H 0.051 0.949 38 H 0.238 0.762 39 H 0.248 0.752 40 H 0.169 0.831 41 H 0.173 0.827 42 H 0.156 0.844 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.992 -14.769 13.072 19.824 hybrid contribution 0.007 0.127 -1.655 1.660 sum -1.985 -14.642 11.417 18.673 Atomic orbital electron populations 1.21581 0.79753 1.03895 1.00811 1.45743 1.07907 1.08883 1.75245 1.21313 0.91580 0.83521 0.75206 1.90801 1.71512 1.33226 1.50415 1.22074 0.90028 0.96783 1.08812 1.20673 0.95233 0.92002 0.85488 0.91779 1.22171 0.93624 1.01756 1.04067 1.44981 1.73647 1.03695 1.14813 1.15948 0.77458 0.83208 0.82652 1.90784 1.58935 1.64335 1.35276 1.42288 1.70909 1.06626 1.11613 1.16970 1.07942 0.83450 0.92389 1.20963 0.96657 0.93994 0.97267 1.20857 1.09556 0.94029 0.97436 1.17395 1.01423 0.77149 0.94425 1.91422 1.92193 1.31348 1.97339 1.20898 1.13117 0.94625 0.99343 1.18987 0.95865 0.90626 0.87229 1.83878 1.76101 1.35347 1.15661 1.21753 1.46062 0.93156 0.88234 0.88398 1.26381 0.95344 0.97876 1.01240 1.70119 1.42763 1.11836 1.29539 0.84667 0.79297 0.77445 0.75379 1.19116 1.19284 1.18128 0.94218 0.87100 0.93706 0.74218 0.83288 0.85062 0.88568 0.90777 0.94940 0.76187 0.75237 0.83069 0.82659 0.84391 0.91629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.08 10.70 127.77 1.37 2.45 16 2 N -0.72 -8.48 5.71 -484.52 -2.77 -11.25 16 3 C 0.50 9.47 7.69 87.66 0.67 10.14 16 4 O -0.58 -18.38 15.35 -3.02 -0.05 -18.43 16 5 C -0.14 -1.59 5.24 29.85 0.16 -1.44 16 6 C 0.17 3.75 2.13 44.99 0.10 3.85 16 7 H 0.06 1.86 7.39 -2.39 -0.02 1.84 16 8 C -0.16 -2.94 9.48 71.98 0.68 -2.25 16 9 N -0.72 -20.41 4.22 -457.80 -1.93 -22.35 16 10 C 0.71 27.32 8.33 179.05 1.49 28.81 16 11 O -0.61 -26.77 13.18 -4.03 -0.05 -26.82 16 12 N -0.67 -27.86 5.30 -316.69 -1.68 -29.53 16 13 C 0.09 4.06 6.45 38.22 0.25 4.30 16 14 C -0.07 -2.87 8.71 22.37 0.19 -2.67 16 15 C -0.20 -7.69 10.02 22.33 0.22 -7.47 16 16 C 0.12 4.82 7.29 22.37 0.16 4.99 16 17 F -0.14 -5.59 17.26 44.97 0.78 -4.81 16 18 C -0.26 -12.03 9.14 22.41 0.20 -11.83 16 19 C 0.13 6.31 6.66 22.69 0.15 6.46 16 20 O -0.20 -11.47 9.17 -22.74 -0.21 -11.68 16 21 C -0.42 -23.23 9.49 67.91 0.64 -22.58 16 22 H 0.10 5.15 5.20 -2.91 -0.02 5.13 16 23 C -0.01 -0.48 5.49 84.83 0.47 -0.02 16 24 N -0.91 -51.52 13.67 21.61 0.30 -51.23 16 25 Si 1.01 41.45 29.55 68.60 2.03 43.48 16 26 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 27 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 28 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 29 H 0.04 0.68 8.14 -2.39 -0.02 0.67 16 30 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.42 1.40 8.83 -92.71 -0.82 0.58 16 33 H 0.15 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 36 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.40 9.81 8.62 -92.71 -0.80 9.01 16 39 H 0.41 16.78 8.36 -92.71 -0.78 16.01 16 40 H 0.15 6.43 5.78 -2.91 -0.02 6.41 16 41 H 0.16 4.95 8.06 -2.91 -0.02 4.93 16 42 H 0.14 6.41 5.63 -2.91 -0.02 6.39 16 43 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -80.43 372.92 1.89 -78.54 By element: Atomic # 1 Polarization: 42.63 SS G_CDS: -1.29 Total: 41.34 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: 6.76 Total: 12.74 kcal Atomic # 7 Polarization: -108.28 SS G_CDS: -6.08 Total: -114.36 kcal Atomic # 8 Polarization: -56.62 SS G_CDS: -0.31 Total: -56.93 kcal Atomic # 9 Polarization: -5.59 SS G_CDS: 0.78 Total: -4.81 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -80.43 1.89 -78.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001425407490.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.284 kcal (2) G-P(sol) polarization free energy of solvation -80.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds