Wall clock time and date at job start Sat Apr 11 2020 05:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35675 * 117.00248 * 2 1 4 4 C 1.38915 * 119.68314 * 179.72716 * 3 2 1 5 5 C 1.38384 * 119.11112 * 179.75573 * 4 3 2 6 6 C 1.38826 * 118.48284 * 0.51069 * 5 4 3 7 7 C 1.38048 * 119.28948 * 359.72773 * 6 5 4 8 8 C 1.50704 * 119.58253 * 179.97438 * 7 6 5 9 9 N 1.46906 * 109.46705 * 95.02470 * 8 7 6 10 10 C 1.46893 * 110.99909 * 180.02562 * 9 8 7 11 11 H 1.09000 * 109.47197 * 325.00194 * 10 9 8 12 12 C 1.52995 * 109.47248 * 85.00177 * 10 9 8 13 13 C 1.53001 * 109.47247 * 205.00202 * 10 9 8 14 14 N 1.46499 * 109.47009 * 55.00147 * 13 10 9 15 15 C 1.34780 * 120.00015 * 180.02562 * 14 13 10 16 16 O 1.21275 * 119.99908 * 359.97438 * 15 14 13 17 17 C 1.50697 * 119.99988 * 180.02562 * 15 14 13 18 18 S 1.81001 * 109.47121 * 179.97438 * 17 15 14 19 19 C 1.76201 * 99.99974 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00040 * 359.97438 * 19 18 17 21 21 C 1.38796 * 119.99857 * 180.02562 * 19 18 17 22 22 N 1.31639 * 120.00232 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00041 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.47319 * 89.99753 * 23 21 19 25 25 H 1.48499 * 109.47334 * 209.99484 * 23 21 19 26 26 H 1.48501 * 109.47055 * 329.99833 * 23 21 19 27 27 N 1.31963 * 120.83448 * 0.02569 * 7 6 5 28 28 H 1.08999 * 109.46969 * 59.99622 * 1 2 3 29 29 H 1.08996 * 109.47087 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46864 * 300.00240 * 1 2 3 31 31 H 1.08003 * 120.45041 * 0.02562 * 4 3 2 32 32 H 1.07999 * 120.75530 * 180.24165 * 5 4 3 33 33 H 1.08003 * 120.35720 * 179.75404 * 6 5 4 34 34 H 1.08998 * 109.47460 * 215.02436 * 8 7 6 35 35 H 1.08997 * 109.47373 * 335.03060 * 8 7 6 36 36 H 1.00896 * 111.00145 * 303.95508 * 9 8 7 37 37 H 1.09000 * 109.47693 * 179.97438 * 12 10 9 38 38 H 1.09002 * 109.47247 * 300.00183 * 12 10 9 39 39 H 1.09000 * 109.47007 * 59.99901 * 12 10 9 40 40 H 1.09003 * 109.47493 * 174.99723 * 13 10 9 41 41 H 1.08999 * 109.47264 * 294.99802 * 13 10 9 42 42 H 0.97007 * 120.00287 * 359.97438 * 14 13 10 43 43 H 1.08997 * 109.47273 * 299.99504 * 17 15 14 44 44 H 1.09004 * 109.47416 * 59.99619 * 17 15 14 45 45 H 0.96998 * 120.00383 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2088 0.0000 4 6 3.4327 1.2738 0.0057 5 6 4.0487 2.5130 0.0005 6 6 3.2507 3.6490 0.0006 7 6 1.8773 3.5096 0.0000 8 6 1.0048 4.7384 0.0007 9 7 0.6228 5.0683 -1.3790 10 6 -0.2297 6.2639 -1.4175 11 1 -0.8725 6.2804 -0.5374 12 6 0.6489 7.5165 -1.4309 13 6 -1.0938 6.2337 -2.6797 14 7 -1.8467 4.9778 -2.7261 15 6 -2.6798 4.7292 -3.7560 16 8 -2.8066 5.5453 -4.6440 17 6 -3.4547 3.4375 -3.8033 18 16 -4.4770 3.4016 -5.2966 19 6 -5.2491 1.8299 -5.1011 20 1 -5.0213 1.2198 -4.2396 21 6 -6.1492 1.3755 -6.0549 22 7 -6.4265 2.1190 -7.1053 23 14 -6.9672 -0.2910 -5.8481 24 1 -8.2338 -0.1301 -5.0895 25 1 -7.2607 -0.8677 -7.1847 26 1 -6.0577 -1.2001 -5.1055 27 7 1.3188 2.3140 0.0000 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 4.0230 0.3694 0.0098 32 1 5.1256 2.5944 0.0009 33 1 3.6996 4.6313 0.0006 34 1 0.1080 4.5470 0.5900 35 1 1.5538 5.5737 0.4352 36 1 1.4381 5.1870 -1.9613 37 1 0.0164 8.4037 -1.4600 38 1 1.2646 7.5380 -0.5317 39 1 1.2917 7.5000 -2.3110 40 1 -1.7887 7.0734 -2.6647 41 1 -0.4546 6.3069 -3.5596 42 1 -1.7451 4.3248 -2.0159 43 1 -2.7603 2.5975 -3.8178 44 1 -4.0944 3.3650 -2.9237 45 1 -7.0559 1.8016 -7.7716 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480427494.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:35 Heat of formation + Delta-G solvation = -39.601034 kcal Electronic energy + Delta-G solvation = -26200.813843 eV Core-core repulsion = 22344.939699 eV Total energy + Delta-G solvation = -3855.874144 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.95372 -39.19483 -38.40531 -37.36388 -34.14297 -32.91701 -32.37114 -31.99493 -30.17195 -29.17550 -27.58052 -26.12813 -25.56397 -25.18568 -23.25363 -22.29057 -21.27389 -20.07020 -18.43848 -17.76652 -17.29771 -16.38639 -16.32993 -16.17851 -16.08064 -15.95740 -15.16574 -14.75942 -14.73430 -14.63914 -14.26189 -13.92955 -13.84438 -13.63749 -13.17302 -13.03631 -12.82724 -12.78693 -12.60129 -12.51601 -12.21886 -11.99812 -11.88025 -11.57495 -11.35429 -11.18689 -11.01940 -10.96535 -10.71151 -10.21175 -9.88458 -9.75169 -9.26335 -9.01417 -8.89368 -8.70670 -8.64409 -8.15372 -6.42485 -6.16108 -3.85599 0.75318 0.96647 2.85517 3.14663 3.25481 3.26658 3.31027 3.32493 3.39321 3.73511 3.84749 4.01843 4.26230 4.37254 4.57033 4.66071 4.72940 4.77605 4.87545 4.92343 5.00226 5.10148 5.14435 5.18813 5.21006 5.28954 5.33779 5.41026 5.44528 5.52535 5.60994 5.66899 5.70725 5.76876 5.81804 5.95766 6.02141 6.08156 6.26280 6.56272 6.81342 6.96486 7.01543 7.60273 7.65163 7.97022 8.41045 8.80568 9.29141 10.91371 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009642 B = 0.002740 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2903.387704 B =10216.309093 C =12755.300110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.309 6.309 3 C 0.325 3.675 4 C -0.193 4.193 5 C -0.041 4.041 6 C -0.209 4.209 7 C 0.173 3.827 8 C 0.108 3.892 9 N -0.673 5.673 10 C 0.073 3.927 11 H 0.087 0.913 12 C -0.180 4.180 13 C 0.135 3.865 14 N -0.724 5.724 15 C 0.530 3.470 16 O -0.526 6.526 17 C -0.151 4.151 18 S -0.062 6.062 19 C -0.533 4.533 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.869 5.869 23 Si 0.918 3.082 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 N -0.517 5.517 28 H 0.065 0.935 29 H 0.097 0.903 30 H 0.058 0.942 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.134 0.866 34 H 0.092 0.908 35 H 0.050 0.950 36 H 0.346 0.654 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.404 0.596 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.294 4.462 20.038 30.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.216 6.216 3 C 0.145 3.855 4 C -0.214 4.214 5 C -0.066 4.066 6 C -0.230 4.230 7 C 0.035 3.965 8 C -0.021 4.021 9 N -0.305 5.305 10 C -0.037 4.037 11 H 0.105 0.895 12 C -0.240 4.240 13 C 0.009 3.991 14 N -0.378 5.378 15 C 0.316 3.684 16 O -0.401 6.401 17 C -0.301 4.301 18 S 0.164 5.836 19 C -0.681 4.681 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.504 5.504 23 Si 0.744 3.256 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 N -0.241 5.241 28 H 0.084 0.916 29 H 0.115 0.885 30 H 0.077 0.923 31 H 0.158 0.842 32 H 0.158 0.842 33 H 0.152 0.848 34 H 0.110 0.890 35 H 0.069 0.931 36 H 0.165 0.835 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.239 0.761 43 H 0.106 0.894 44 H 0.105 0.895 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 20.630 5.048 18.379 28.087 hybrid contribution 1.065 -1.524 1.649 2.485 sum 21.695 3.524 20.028 29.736 Atomic orbital electron populations 1.22919 0.76539 1.03242 1.02903 1.86239 1.23456 1.24361 1.87513 1.19865 0.89349 0.84809 0.91432 1.21096 0.92201 0.99676 1.08463 1.21365 1.00507 0.91208 0.93525 1.21793 0.94149 0.99887 1.07154 1.20706 0.91279 0.91656 0.92821 1.20849 0.98400 0.91581 0.91252 1.60445 1.23773 1.37386 1.08881 1.21856 0.94680 0.88041 0.99135 0.89503 1.22425 1.00530 0.98852 1.02174 1.21215 0.93802 0.87321 0.96716 1.45786 1.45034 1.20853 1.26171 1.20263 0.78913 0.88135 0.81107 1.90684 1.64550 1.47744 1.37156 1.23499 1.02434 0.97044 1.07152 1.85362 1.50420 1.25549 1.22238 1.22875 1.29813 1.04043 1.11406 0.90989 1.24989 0.95965 0.98199 0.94487 1.70026 1.33186 1.37002 1.10189 0.86180 0.79452 0.82280 0.77654 1.20312 1.20798 1.19700 1.67105 1.40785 0.98177 1.18066 0.91611 0.88508 0.92278 0.84178 0.84164 0.84849 0.89014 0.93149 0.83544 0.91297 0.92328 0.91882 0.91394 0.91885 0.76123 0.89374 0.89456 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.38 101.05 1.05 1.43 16 2 O -0.31 -3.49 10.48 -18.73 -0.20 -3.69 16 3 C 0.32 3.58 7.49 -17.12 -0.13 3.45 16 4 C -0.19 -1.67 10.04 -39.28 -0.39 -2.06 16 5 C -0.04 -0.27 10.17 -39.31 -0.40 -0.67 16 6 C -0.21 -1.46 9.71 -39.43 -0.38 -1.84 16 7 C 0.17 1.53 6.29 -82.60 -0.52 1.01 16 8 C 0.11 0.77 5.79 -4.97 -0.03 0.74 16 9 N -0.67 -5.38 5.68 -107.99 -0.61 -5.99 16 10 C 0.07 0.56 2.75 -67.72 -0.19 0.37 16 11 H 0.09 0.63 7.80 -51.93 -0.41 0.23 16 12 C -0.18 -1.05 9.16 37.16 0.34 -0.71 16 13 C 0.13 1.57 5.37 -4.04 -0.02 1.55 16 14 N -0.72 -10.40 5.39 -60.29 -0.32 -10.72 16 15 C 0.53 10.44 7.85 -10.99 -0.09 10.35 16 16 O -0.53 -12.42 15.86 5.56 0.09 -12.33 16 17 C -0.15 -3.20 6.16 36.00 0.22 -2.98 16 18 S -0.06 -1.74 20.57 -107.50 -2.21 -3.96 16 19 C -0.53 -15.53 9.50 30.94 0.29 -15.24 16 20 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 22 N -0.87 -26.65 13.22 55.49 0.73 -25.92 16 23 Si 0.92 21.78 29.55 -169.99 -5.02 16.75 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 26 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 27 N -0.52 -5.73 9.13 -9.55 -0.09 -5.82 16 28 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 29 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 31 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 32 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 33 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 34 H 0.09 0.70 8.06 -51.93 -0.42 0.28 16 35 H 0.05 0.26 7.33 -51.93 -0.38 -0.13 16 36 H 0.35 2.66 8.46 -39.29 -0.33 2.33 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.28 7.45 -51.93 -0.39 -0.11 16 39 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.40 5.14 8.14 -40.82 -0.33 4.81 16 43 H 0.09 1.78 8.14 -51.92 -0.42 1.35 16 44 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 45 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 398.07 15.07 6.00 6.00 Total: -1.00 -36.31 398.07 -8.84 -45.16 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -6.87 Total: 3.12 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -0.34 Total: -2.60 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: -0.29 Total: -48.45 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -0.11 Total: -16.02 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: -1.74 SS G_CDS: -2.21 Total: -3.96 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.31 -8.84 -45.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480427494.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.555 kcal (2) G-P(sol) polarization free energy of solvation -36.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds