Wall clock time and date at job start Sat Apr 11 2020 05:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35675 * 117.00248 * 2 1 4 4 C 1.38915 * 119.68314 * 179.72716 * 3 2 1 5 5 C 1.38384 * 119.11112 * 179.75573 * 4 3 2 6 6 C 1.38826 * 118.48284 * 0.51069 * 5 4 3 7 7 C 1.38048 * 119.28948 * 359.72773 * 6 5 4 8 8 C 1.50704 * 119.58253 * 179.97438 * 7 6 5 9 9 N 1.46906 * 109.46705 * 95.02470 * 8 7 6 10 10 C 1.46893 * 110.99909 * 180.02562 * 9 8 7 11 11 H 1.09000 * 109.47197 * 325.00194 * 10 9 8 12 12 C 1.52995 * 109.47248 * 85.00177 * 10 9 8 13 13 C 1.53001 * 109.47247 * 205.00202 * 10 9 8 14 14 N 1.46499 * 109.47009 * 55.00147 * 13 10 9 15 15 C 1.34780 * 120.00015 * 180.02562 * 14 13 10 16 16 O 1.21275 * 119.99908 * 359.97438 * 15 14 13 17 17 C 1.50697 * 119.99988 * 180.02562 * 15 14 13 18 18 S 1.81001 * 109.47121 * 179.97438 * 17 15 14 19 19 C 1.76201 * 99.99974 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00040 * 359.97438 * 19 18 17 21 21 C 1.38796 * 119.99857 * 180.02562 * 19 18 17 22 22 N 1.31639 * 120.00232 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00041 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.47319 * 89.99753 * 23 21 19 25 25 H 1.48499 * 109.47334 * 209.99484 * 23 21 19 26 26 H 1.48501 * 109.47055 * 329.99833 * 23 21 19 27 27 N 1.31963 * 120.83448 * 0.02569 * 7 6 5 28 28 H 1.08999 * 109.46969 * 59.99622 * 1 2 3 29 29 H 1.08996 * 109.47087 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46864 * 300.00240 * 1 2 3 31 31 H 1.08003 * 120.45041 * 0.02562 * 4 3 2 32 32 H 1.07999 * 120.75530 * 180.24165 * 5 4 3 33 33 H 1.08003 * 120.35720 * 179.75404 * 6 5 4 34 34 H 1.08998 * 109.47460 * 215.02436 * 8 7 6 35 35 H 1.08997 * 109.47373 * 335.03060 * 8 7 6 36 36 H 1.00896 * 111.00145 * 303.95508 * 9 8 7 37 37 H 1.09000 * 109.47693 * 179.97438 * 12 10 9 38 38 H 1.09002 * 109.47247 * 300.00183 * 12 10 9 39 39 H 1.09000 * 109.47007 * 59.99901 * 12 10 9 40 40 H 1.09003 * 109.47493 * 174.99723 * 13 10 9 41 41 H 1.08999 * 109.47264 * 294.99802 * 13 10 9 42 42 H 0.97007 * 120.00287 * 359.97438 * 14 13 10 43 43 H 1.08997 * 109.47273 * 299.99504 * 17 15 14 44 44 H 1.09004 * 109.47416 * 59.99619 * 17 15 14 45 45 H 0.96998 * 120.00383 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2088 0.0000 4 6 3.4327 1.2738 0.0057 5 6 4.0487 2.5130 0.0005 6 6 3.2507 3.6490 0.0006 7 6 1.8773 3.5096 0.0000 8 6 1.0048 4.7384 0.0007 9 7 0.6228 5.0683 -1.3790 10 6 -0.2297 6.2639 -1.4175 11 1 -0.8725 6.2804 -0.5374 12 6 0.6489 7.5165 -1.4309 13 6 -1.0938 6.2337 -2.6797 14 7 -1.8467 4.9778 -2.7261 15 6 -2.6798 4.7292 -3.7560 16 8 -2.8066 5.5453 -4.6440 17 6 -3.4547 3.4375 -3.8033 18 16 -4.4770 3.4016 -5.2966 19 6 -5.2491 1.8299 -5.1011 20 1 -5.0213 1.2198 -4.2396 21 6 -6.1492 1.3755 -6.0549 22 7 -6.4265 2.1190 -7.1053 23 14 -6.9672 -0.2910 -5.8481 24 1 -8.2338 -0.1301 -5.0895 25 1 -7.2607 -0.8677 -7.1847 26 1 -6.0577 -1.2001 -5.1055 27 7 1.3188 2.3140 0.0000 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 4.0230 0.3694 0.0098 32 1 5.1256 2.5944 0.0009 33 1 3.6996 4.6313 0.0006 34 1 0.1080 4.5470 0.5900 35 1 1.5538 5.5737 0.4352 36 1 1.4381 5.1870 -1.9613 37 1 0.0164 8.4037 -1.4600 38 1 1.2646 7.5380 -0.5317 39 1 1.2917 7.5000 -2.3110 40 1 -1.7887 7.0734 -2.6647 41 1 -0.4546 6.3069 -3.5596 42 1 -1.7451 4.3248 -2.0159 43 1 -2.7603 2.5975 -3.8178 44 1 -4.0944 3.3650 -2.9237 45 1 -7.0559 1.8016 -7.7716 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480427494.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:34 Heat of formation + Delta-G solvation = -68.433144 kcal Electronic energy + Delta-G solvation = -26202.064097 eV Core-core repulsion = 22344.939699 eV Total energy + Delta-G solvation = -3857.124398 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.59324 -40.58785 -39.17243 -38.18832 -35.25919 -34.58207 -33.66222 -32.74217 -31.17895 -30.36029 -28.27963 -27.73131 -26.82954 -26.14646 -23.89717 -22.87955 -22.02767 -21.56976 -19.79884 -19.13018 -18.02613 -17.68149 -17.28521 -17.10239 -16.88384 -16.87915 -16.81714 -16.18310 -16.00900 -15.62631 -15.35823 -14.92648 -14.67261 -14.55165 -14.45952 -14.16459 -13.97759 -13.60819 -13.49087 -13.20684 -13.16253 -13.14228 -12.89745 -12.87450 -12.65472 -12.58825 -12.40590 -12.09217 -11.87380 -11.71620 -11.14143 -10.91387 -10.82244 -10.52692 -10.27812 -9.98939 -9.50189 -9.31069 -8.66264 -8.34454 -6.12475 0.14359 0.37653 1.27754 1.42244 1.47341 1.58448 1.67601 2.19019 2.27173 2.39528 2.69080 2.99306 3.13656 3.32594 3.39056 3.82319 3.90468 4.03183 4.11840 4.15909 4.21514 4.29764 4.34539 4.35259 4.41617 4.43547 4.51136 4.53614 4.56918 4.67993 4.78304 4.81634 4.88914 4.93952 5.00324 5.06777 5.26051 5.30227 5.41622 5.54639 5.55329 5.99564 6.20035 6.26986 6.40227 6.61881 6.96162 7.06502 7.32801 8.74936 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009642 B = 0.002740 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2903.387704 B =10216.309093 C =12755.300110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.325 6.325 3 C 0.291 3.709 4 C -0.203 4.203 5 C -0.037 4.037 6 C -0.201 4.201 7 C 0.153 3.847 8 C 0.115 3.885 9 N -0.687 5.687 10 C 0.087 3.913 11 H 0.096 0.904 12 C -0.174 4.174 13 C 0.130 3.870 14 N -0.698 5.698 15 C 0.530 3.470 16 O -0.571 6.571 17 C -0.127 4.127 18 S -0.149 6.149 19 C -0.546 4.546 20 H 0.081 0.919 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 0.999 3.001 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.259 1.259 27 N -0.543 5.543 28 H 0.048 0.952 29 H 0.114 0.886 30 H 0.058 0.942 31 H 0.151 0.849 32 H 0.174 0.826 33 H 0.164 0.836 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.348 0.652 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.052 0.948 42 H 0.415 0.585 43 H 0.101 0.899 44 H 0.106 0.894 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.117 4.320 22.281 33.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.233 6.233 3 C 0.112 3.888 4 C -0.223 4.223 5 C -0.063 4.063 6 C -0.221 4.221 7 C 0.016 3.984 8 C -0.013 4.013 9 N -0.320 5.320 10 C -0.023 4.023 11 H 0.114 0.886 12 C -0.233 4.233 13 C 0.006 3.994 14 N -0.351 5.351 15 C 0.315 3.685 16 O -0.451 6.451 17 C -0.278 4.278 18 S 0.078 5.922 19 C -0.694 4.694 20 H 0.099 0.901 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.192 1.192 25 H -0.202 1.202 26 H -0.183 1.183 27 N -0.267 5.267 28 H 0.067 0.933 29 H 0.133 0.867 30 H 0.077 0.923 31 H 0.169 0.831 32 H 0.192 0.808 33 H 0.182 0.818 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.168 0.832 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.252 0.748 43 H 0.119 0.881 44 H 0.124 0.876 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 22.493 4.916 20.680 30.948 hybrid contribution 0.631 -1.387 1.025 1.837 sum 23.124 3.529 21.705 31.910 Atomic orbital electron populations 1.22923 0.76295 1.04123 1.01978 1.86205 1.23875 1.25175 1.88022 1.20240 0.90391 0.84761 0.93360 1.21397 0.91450 1.01205 1.08273 1.21814 1.02215 0.90272 0.91959 1.22168 0.93410 1.01414 1.05115 1.21119 0.92598 0.91394 0.93284 1.20836 0.98256 0.91774 0.90475 1.60341 1.24204 1.37600 1.09822 1.21696 0.94537 0.89094 0.96957 0.88568 1.22364 1.00267 0.97510 1.03142 1.21468 0.93805 0.85489 0.98681 1.45602 1.43129 1.21917 1.24440 1.20015 0.79528 0.87114 0.81804 1.90669 1.66341 1.48879 1.39181 1.23339 1.01895 0.98731 1.03879 1.85512 1.52651 1.26545 1.27477 1.23197 1.30205 1.04053 1.11973 0.90131 1.26139 0.96433 1.02761 0.93832 1.70187 1.34008 1.39344 1.11254 0.84948 0.78475 0.76533 0.77984 1.19173 1.20183 1.18275 1.67053 1.41801 0.98995 1.18870 0.93326 0.86747 0.92310 0.83103 0.80813 0.81797 0.89854 0.90311 0.83240 0.91225 0.90311 0.91972 0.91745 0.92969 0.74837 0.88108 0.87597 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.82 10.38 113.37 1.18 2.00 16 2 O -0.33 -7.51 10.48 -89.92 -0.94 -8.46 16 3 C 0.29 6.39 7.49 84.79 0.63 7.03 16 4 C -0.20 -3.26 10.04 22.47 0.23 -3.03 16 5 C -0.04 -0.40 10.17 22.45 0.23 -0.17 16 6 C -0.20 -2.17 9.71 22.37 0.22 -1.95 16 7 C 0.15 2.41 6.29 42.49 0.27 2.68 16 8 C 0.12 1.33 5.79 85.56 0.50 1.83 16 9 N -0.69 -9.46 5.68 -495.58 -2.81 -12.28 16 10 C 0.09 1.14 2.75 44.92 0.12 1.26 16 11 H 0.10 1.13 7.80 -2.39 -0.02 1.11 16 12 C -0.17 -1.51 9.16 71.98 0.66 -0.85 16 13 C 0.13 2.90 5.37 86.38 0.46 3.36 16 14 N -0.70 -19.46 5.39 -463.06 -2.50 -21.96 16 15 C 0.53 20.99 7.85 87.66 0.69 21.67 16 16 O -0.57 -27.72 15.86 -3.01 -0.05 -27.77 16 17 C -0.13 -5.43 6.16 71.23 0.44 -4.99 16 18 S -0.15 -8.59 20.57 -56.49 -1.16 -9.76 16 19 C -0.55 -32.19 9.50 67.95 0.65 -31.54 16 20 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 21 C 0.01 0.76 5.49 84.86 0.47 1.22 16 22 N -0.91 -57.09 13.22 21.65 0.29 -56.81 16 23 Si 1.00 44.57 29.55 68.60 2.03 46.59 16 24 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 25 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 26 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 27 N -0.54 -11.77 9.13 -297.00 -2.71 -14.48 16 28 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 29 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.06 1.11 8.10 -2.39 -0.02 1.09 16 31 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 32 H 0.17 0.61 8.06 -2.91 -0.02 0.59 16 33 H 0.16 0.71 8.06 -2.91 -0.02 0.69 16 34 H 0.08 1.11 8.06 -2.39 -0.02 1.09 16 35 H 0.08 0.47 7.33 -2.39 -0.02 0.45 16 36 H 0.35 4.53 8.46 -89.70 -0.76 3.77 16 37 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.08 0.41 7.45 -2.39 -0.02 0.40 16 39 H 0.06 0.58 8.13 -2.39 -0.02 0.56 16 40 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.41 9.97 8.14 -92.70 -0.75 9.21 16 43 H 0.10 4.03 8.14 -2.40 -0.02 4.01 16 44 H 0.11 4.10 8.14 -2.39 -0.02 4.08 16 45 H 0.27 15.73 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -82.33 398.07 -1.63 -83.97 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: -0.50 Total: 22.43 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: 6.73 Total: -1.49 kcal Atomic # 7 Polarization: -97.78 SS G_CDS: -7.73 Total: -105.52 kcal Atomic # 8 Polarization: -35.23 SS G_CDS: -0.99 Total: -36.22 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.76 kcal Total: -82.33 -1.63 -83.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480427494.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.532 kcal (2) G-P(sol) polarization free energy of solvation -82.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds