Wall clock time and date at job start Sat Apr 11 2020 05:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46506 * 109.47051 * 189.20015 * 3 2 1 5 5 C 1.34770 * 119.99955 * 180.02562 * 4 3 2 6 6 O 1.21277 * 120.00452 * 0.02562 * 5 4 3 7 7 C 1.50707 * 119.99645 * 179.97438 * 5 4 3 8 8 H 1.08994 * 109.47201 * 299.99901 * 7 5 4 9 9 C 1.52999 * 109.46899 * 60.00445 * 7 5 4 10 10 N 1.46903 * 109.46632 * 180.02562 * 7 5 4 11 11 C 1.47947 * 111.00474 * 70.45978 * 10 7 5 12 12 C 1.53939 * 86.30652 * 137.63406 * 11 10 7 13 13 C 1.52993 * 113.73738 * 221.86948 * 12 11 10 14 14 N 1.46501 * 109.47167 * 185.00317 * 13 12 11 15 15 C 1.34776 * 120.00064 * 180.02562 * 14 13 12 16 16 O 1.21283 * 119.99725 * 359.97438 * 15 14 13 17 17 C 1.50703 * 120.00216 * 179.97438 * 15 14 13 18 18 S 1.81001 * 109.47172 * 179.97438 * 17 15 14 19 19 C 1.76197 * 99.99571 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00621 * 359.97438 * 19 18 17 21 21 C 1.38800 * 119.99736 * 179.97438 * 19 18 17 22 22 N 1.31638 * 120.00117 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00289 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47081 * 89.99746 * 23 21 19 25 25 H 1.48495 * 109.47683 * 210.00085 * 23 21 19 26 26 H 1.48500 * 109.46977 * 330.00528 * 23 21 19 27 27 C 1.48309 * 111.10297 * 169.71386 * 10 7 5 28 28 H 4.40639 * 5.51478 * 180.02562 * 4 1 2 29 29 H 1.09002 * 109.46872 * 69.20531 * 3 2 1 30 30 H 1.08994 * 109.47182 * 309.19823 * 3 2 1 31 31 H 0.97008 * 119.99589 * 0.02562 * 4 3 2 32 32 H 1.09002 * 109.46936 * 184.08800 * 9 7 5 33 33 H 1.08997 * 109.47295 * 304.08851 * 9 7 5 34 34 H 1.08995 * 109.47240 * 64.09287 * 9 7 5 35 35 H 1.09007 * 113.76101 * 23.26148 * 11 10 7 36 36 H 1.09001 * 113.76261 * 252.01121 * 11 10 7 37 37 H 1.09000 * 113.72909 * 90.58407 * 12 11 10 38 38 H 1.09007 * 109.46734 * 304.99484 * 13 12 11 39 39 H 1.08996 * 109.47595 * 64.99191 * 13 12 11 40 40 H 0.96995 * 119.99710 * 359.97438 * 14 13 12 41 41 H 1.09000 * 109.46661 * 299.99672 * 17 15 14 42 42 H 1.08995 * 109.46769 * 59.99390 * 17 15 14 43 43 H 0.96998 * 119.99632 * 180.02562 * 22 21 19 44 44 H 1.09003 * 113.75972 * 108.13608 * 27 10 7 45 45 H 1.08995 * 113.85951 * 336.78100 * 27 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3644 0.2208 5 6 4.4586 1.6082 0.2597 6 8 5.2472 0.6988 0.1114 7 6 4.9603 3.0111 0.4863 8 1 4.5964 3.6602 -0.3101 9 6 4.4505 3.5234 1.8349 10 7 6.4293 3.0119 0.4852 11 6 6.9587 2.7641 -0.8739 12 6 7.9824 3.8727 -0.5693 13 6 8.2220 4.8282 -1.7399 14 7 9.2921 5.7668 -1.3930 15 6 9.6764 6.7076 -2.2782 16 8 9.1367 6.7769 -3.3621 17 6 10.7768 7.6735 -1.9211 18 16 11.0604 8.8038 -3.3061 19 6 12.3565 9.7908 -2.6349 20 1 12.7260 9.5929 -1.6396 21 6 12.9027 10.8227 -3.3855 22 7 12.4528 11.0637 -4.5989 23 14 14.2764 11.8696 -2.6738 24 1 15.5882 11.2617 -3.0125 25 1 14.2027 13.2382 -3.2453 26 1 14.1303 11.9410 -1.1977 27 6 6.9625 4.3956 0.4584 28 1 -1.0502 -0.0004 0.0001 29 1 3.0095 -0.3640 -0.9607 30 1 3.0096 -0.6486 0.7964 31 1 2.5030 2.0918 0.3391 32 1 4.7522 4.5625 1.9664 33 1 3.3630 3.4545 1.8622 34 1 4.8731 2.9181 2.6368 35 1 6.2598 3.0187 -1.6707 36 1 7.4042 1.7771 -0.9985 37 1 8.9065 3.5058 -0.1227 38 1 8.5118 4.2568 -2.6218 39 1 7.3070 5.3819 -1.9503 40 1 9.7234 5.7115 -0.5260 41 1 10.4868 8.2446 -1.0392 42 1 11.6919 7.1200 -1.7110 43 1 12.8348 11.7846 -5.1235 44 1 7.4109 4.7118 1.4003 45 1 6.2659 5.1287 0.0518 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481613319.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:50 Heat of formation + Delta-G solvation = 20.188230 kcal Electronic energy + Delta-G solvation = -25394.728450 eV Core-core repulsion = 21541.446962 eV Total energy + Delta-G solvation = -3853.281487 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.11585 -39.60642 -38.81428 -35.95266 -34.85458 -33.59023 -32.65829 -32.42204 -30.08628 -28.15649 -27.73312 -26.51815 -25.51939 -24.86368 -22.92918 -20.65159 -20.61166 -19.79997 -19.16931 -17.85158 -17.49572 -16.94885 -16.36276 -16.23302 -16.15951 -15.73831 -15.26974 -14.89915 -14.79831 -14.72827 -14.53267 -13.94058 -13.84964 -13.57628 -13.42533 -13.10503 -13.03520 -12.77985 -12.56810 -12.52619 -12.22389 -11.76226 -11.48319 -11.40453 -11.23346 -11.07499 -11.05919 -11.01921 -10.86821 -10.75067 -10.10585 -9.81185 -9.62463 -9.42805 -9.16927 -9.06457 -8.86684 -8.23032 -6.49487 -6.21243 -3.91752 1.78819 2.13248 2.22151 2.87614 3.03330 3.10886 3.22841 3.28358 3.32342 3.49387 3.65542 3.68925 4.11162 4.16764 4.21033 4.42383 4.48345 4.56577 4.78517 4.95115 4.96954 4.99475 5.02859 5.11867 5.14006 5.20165 5.24540 5.25821 5.33291 5.46424 5.53492 5.60977 5.62705 5.76379 5.79284 5.89772 5.91393 5.99074 6.15162 6.52009 6.62798 6.89011 6.95132 7.60087 7.71994 7.73246 8.35721 8.62303 9.24162 10.86197 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.033885 B = 0.001501 C = 0.001486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.136365 B =18650.391223 C =18835.444566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.212 4.212 3 C 0.232 3.768 4 N -0.732 5.732 5 C 0.522 3.478 6 O -0.516 6.516 7 C 0.029 3.971 8 H 0.076 0.924 9 C -0.141 4.141 10 N -0.456 5.456 11 C 0.021 3.979 12 C -0.127 4.127 13 C 0.130 3.870 14 N -0.737 5.737 15 C 0.531 3.469 16 O -0.519 6.519 17 C -0.153 4.153 18 S -0.061 6.061 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.007 3.993 28 H 0.223 0.777 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.403 0.597 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.109 0.891 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.399 0.601 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.268 0.732 44 H 0.094 0.906 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.922 -20.283 14.325 33.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.213 4.213 3 C 0.109 3.891 4 N -0.387 5.387 5 C 0.308 3.692 6 O -0.389 6.389 7 C -0.083 4.083 8 H 0.093 0.907 9 C -0.199 4.199 10 N -0.179 5.179 11 C -0.108 4.108 12 C -0.147 4.147 13 C 0.006 3.994 14 N -0.392 5.392 15 C 0.317 3.683 16 O -0.393 6.393 17 C -0.304 4.304 18 S 0.165 5.835 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 C -0.121 4.121 28 H 0.239 0.761 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.238 0.762 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.117 0.883 37 H 0.127 0.873 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.233 0.767 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.113 0.887 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -22.068 -21.187 12.777 33.153 hybrid contribution 0.712 1.389 1.521 2.179 sum -21.356 -19.798 14.298 32.442 Atomic orbital electron populations 1.25080 0.95996 0.97028 1.00477 1.22911 0.94257 1.02962 1.01123 1.18050 0.83117 0.84608 1.03281 1.45999 1.07369 1.09993 1.75321 1.20467 0.81600 0.91040 0.76123 1.90734 1.54889 1.45894 1.47414 1.22231 0.92430 0.93489 1.00140 0.90670 1.21749 1.00634 1.02275 0.95194 1.68663 1.05212 1.17922 1.26118 1.23870 0.96173 1.00312 0.90417 1.23262 0.99324 0.96078 0.96001 1.21285 0.91065 0.90337 0.96752 1.45985 1.39475 1.34287 1.19457 1.20322 0.83432 0.80498 0.84044 1.90702 1.55205 1.71054 1.22386 1.23530 0.98885 1.00952 1.07032 1.85394 1.47773 1.33977 1.16318 1.22872 1.22218 1.19052 1.04238 0.90919 1.24990 0.97216 0.96632 0.94711 1.70022 1.40920 1.30152 1.09227 0.86170 0.81143 0.79097 0.79100 1.20263 1.20760 1.19697 1.24184 0.96742 0.90769 1.00427 0.76068 0.88977 0.88965 0.76233 0.91076 0.91784 0.90935 0.91179 0.88295 0.87312 0.91195 0.91676 0.76727 0.89226 0.89196 0.92196 0.88743 0.90649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.75 19.25 29.55 0.57 -0.18 16 2 C -0.21 -1.21 13.46 -37.12 -0.50 -1.71 16 3 C 0.23 1.39 6.15 -6.82 -0.04 1.35 16 4 N -0.73 -4.37 5.41 -63.16 -0.34 -4.71 16 5 C 0.52 4.45 6.96 -10.99 -0.08 4.37 16 6 O -0.52 -6.34 15.53 5.56 0.09 -6.25 16 7 C 0.03 0.21 2.07 -68.86 -0.14 0.06 16 8 H 0.08 0.45 7.70 -51.93 -0.40 0.05 16 9 C -0.14 -0.74 9.13 37.16 0.34 -0.40 16 10 N -0.46 -3.94 5.67 -230.61 -1.31 -5.25 16 11 C 0.02 0.19 6.30 -2.77 -0.02 0.17 16 12 C -0.13 -1.06 3.94 -89.68 -0.35 -1.41 16 13 C 0.13 1.44 5.53 -4.04 -0.02 1.41 16 14 N -0.74 -9.44 5.56 -60.29 -0.33 -9.77 16 15 C 0.53 9.77 7.85 -10.98 -0.09 9.68 16 16 O -0.52 -11.74 15.86 5.55 0.09 -11.65 16 17 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 18 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 19 C -0.54 -15.24 9.50 30.94 0.29 -14.94 16 20 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.16 13.22 55.49 0.73 -25.43 16 23 Si 0.92 21.36 29.55 -169.99 -5.02 16.34 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 C 0.01 0.05 6.73 -2.57 -0.02 0.04 16 28 H 0.22 0.25 7.80 -54.08 -0.42 -0.17 16 29 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.40 1.55 7.82 -40.82 -0.32 1.23 16 32 H 0.07 0.34 7.66 -51.93 -0.40 -0.06 16 33 H 0.06 0.22 7.45 -51.93 -0.39 -0.17 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.59 7.74 -51.93 -0.40 0.19 16 36 H 0.10 0.99 8.08 -51.93 -0.42 0.57 16 37 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 39 H 0.06 0.76 7.84 -51.93 -0.41 0.35 16 40 H 0.40 3.93 8.47 -40.82 -0.35 3.59 16 41 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 42 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 43 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.08 0.53 7.55 -51.93 -0.39 0.14 16 LS Contribution 400.58 15.07 6.04 6.04 Total: -1.00 -37.31 400.58 -9.02 -46.33 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -6.82 Total: 0.62 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: 0.07 Total: -2.39 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: -1.25 Total: -45.16 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: 0.17 Total: -17.91 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -37.31 -9.02 -46.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481613319.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.516 kcal (2) G-P(sol) polarization free energy of solvation -37.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds