Wall clock time and date at job start Sat Apr 11 2020 05:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46506 * 109.47051 * 189.20015 * 3 2 1 5 5 C 1.34770 * 119.99955 * 180.02562 * 4 3 2 6 6 O 1.21277 * 120.00452 * 0.02562 * 5 4 3 7 7 C 1.50707 * 119.99645 * 179.97438 * 5 4 3 8 8 H 1.08994 * 109.47201 * 299.99901 * 7 5 4 9 9 C 1.52999 * 109.46899 * 60.00445 * 7 5 4 10 10 N 1.46903 * 109.46632 * 180.02562 * 7 5 4 11 11 C 1.47947 * 111.00474 * 70.45978 * 10 7 5 12 12 C 1.53939 * 86.30652 * 137.63406 * 11 10 7 13 13 C 1.52993 * 113.73738 * 221.86948 * 12 11 10 14 14 N 1.46501 * 109.47167 * 185.00317 * 13 12 11 15 15 C 1.34776 * 120.00064 * 180.02562 * 14 13 12 16 16 O 1.21283 * 119.99725 * 359.97438 * 15 14 13 17 17 C 1.50703 * 120.00216 * 179.97438 * 15 14 13 18 18 S 1.81001 * 109.47172 * 179.97438 * 17 15 14 19 19 C 1.76197 * 99.99571 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00621 * 359.97438 * 19 18 17 21 21 C 1.38800 * 119.99736 * 179.97438 * 19 18 17 22 22 N 1.31638 * 120.00117 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00289 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47081 * 89.99746 * 23 21 19 25 25 H 1.48495 * 109.47683 * 210.00085 * 23 21 19 26 26 H 1.48500 * 109.46977 * 330.00528 * 23 21 19 27 27 C 1.48309 * 111.10297 * 169.71386 * 10 7 5 28 28 H 4.40639 * 5.51478 * 180.02562 * 4 1 2 29 29 H 1.09002 * 109.46872 * 69.20531 * 3 2 1 30 30 H 1.08994 * 109.47182 * 309.19823 * 3 2 1 31 31 H 0.97008 * 119.99589 * 0.02562 * 4 3 2 32 32 H 1.09002 * 109.46936 * 184.08800 * 9 7 5 33 33 H 1.08997 * 109.47295 * 304.08851 * 9 7 5 34 34 H 1.08995 * 109.47240 * 64.09287 * 9 7 5 35 35 H 1.09007 * 113.76101 * 23.26148 * 11 10 7 36 36 H 1.09001 * 113.76261 * 252.01121 * 11 10 7 37 37 H 1.09000 * 113.72909 * 90.58407 * 12 11 10 38 38 H 1.09007 * 109.46734 * 304.99484 * 13 12 11 39 39 H 1.08996 * 109.47595 * 64.99191 * 13 12 11 40 40 H 0.96995 * 119.99710 * 359.97438 * 14 13 12 41 41 H 1.09000 * 109.46661 * 299.99672 * 17 15 14 42 42 H 1.08995 * 109.46769 * 59.99390 * 17 15 14 43 43 H 0.96998 * 119.99632 * 180.02562 * 22 21 19 44 44 H 1.09003 * 113.75972 * 108.13608 * 27 10 7 45 45 H 1.08995 * 113.85951 * 336.78100 * 27 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3644 0.2208 5 6 4.4586 1.6082 0.2597 6 8 5.2472 0.6988 0.1114 7 6 4.9603 3.0111 0.4863 8 1 4.5964 3.6602 -0.3101 9 6 4.4505 3.5234 1.8349 10 7 6.4293 3.0119 0.4852 11 6 6.9587 2.7641 -0.8739 12 6 7.9824 3.8727 -0.5693 13 6 8.2220 4.8282 -1.7399 14 7 9.2921 5.7668 -1.3930 15 6 9.6764 6.7076 -2.2782 16 8 9.1367 6.7769 -3.3621 17 6 10.7768 7.6735 -1.9211 18 16 11.0604 8.8038 -3.3061 19 6 12.3565 9.7908 -2.6349 20 1 12.7260 9.5929 -1.6396 21 6 12.9027 10.8227 -3.3855 22 7 12.4528 11.0637 -4.5989 23 14 14.2764 11.8696 -2.6738 24 1 15.5882 11.2617 -3.0125 25 1 14.2027 13.2382 -3.2453 26 1 14.1303 11.9410 -1.1977 27 6 6.9625 4.3956 0.4584 28 1 -1.0502 -0.0004 0.0001 29 1 3.0095 -0.3640 -0.9607 30 1 3.0096 -0.6486 0.7964 31 1 2.5030 2.0918 0.3391 32 1 4.7522 4.5625 1.9664 33 1 3.3630 3.4545 1.8622 34 1 4.8731 2.9181 2.6368 35 1 6.2598 3.0187 -1.6707 36 1 7.4042 1.7771 -0.9985 37 1 8.9065 3.5058 -0.1227 38 1 8.5118 4.2568 -2.6218 39 1 7.3070 5.3819 -1.9503 40 1 9.7234 5.7115 -0.5260 41 1 10.4868 8.2446 -1.0392 42 1 11.6919 7.1200 -1.7110 43 1 12.8348 11.7846 -5.1235 44 1 7.4109 4.7118 1.4003 45 1 6.2659 5.1287 0.0518 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481613319.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:49 Heat of formation + Delta-G solvation = -9.722601 kcal Electronic energy + Delta-G solvation = -25396.025481 eV Core-core repulsion = 21541.446962 eV Total energy + Delta-G solvation = -3854.578518 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.78477 -40.62057 -39.89133 -36.52806 -35.93560 -34.56952 -34.28667 -33.20822 -31.40143 -29.14330 -28.26057 -27.64760 -27.14280 -25.65566 -23.61853 -21.85670 -21.25079 -20.69693 -19.81617 -19.53832 -18.08152 -17.83523 -17.55596 -17.19454 -16.88599 -16.85923 -16.60566 -16.32512 -15.91188 -15.63015 -15.45811 -15.06783 -14.64682 -14.52065 -14.36779 -14.30377 -14.16525 -13.62679 -13.45440 -13.27041 -13.14884 -13.11078 -12.88030 -12.72027 -12.60925 -12.17489 -11.94968 -11.81257 -11.69700 -11.58381 -11.49418 -11.12846 -10.93004 -10.75616 -10.25634 -10.19274 -10.10425 -9.79086 -8.64944 -8.33261 -6.11157 1.28880 1.35958 1.43745 1.48834 1.53501 1.59172 1.64096 1.79910 2.26998 2.31553 2.37983 2.88588 3.01068 3.31512 3.32151 3.43928 3.57575 3.75823 3.95309 3.98643 4.07221 4.21248 4.25290 4.33231 4.39182 4.45942 4.50560 4.54490 4.55557 4.72038 4.73648 4.82668 4.86373 4.90485 4.97363 5.12693 5.23021 5.25097 5.31969 5.43499 5.47943 5.92362 6.21376 6.43731 6.54113 6.54227 7.08264 7.14229 7.27536 8.75964 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.033885 B = 0.001501 C = 0.001486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.136365 B =18650.391223 C =18835.444566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.249 4.249 3 C 0.233 3.767 4 N -0.719 5.719 5 C 0.519 3.481 6 O -0.561 6.561 7 C 0.029 3.971 8 H 0.091 0.909 9 C -0.136 4.136 10 N -0.472 5.472 11 C 0.021 3.979 12 C -0.114 4.114 13 C 0.133 3.867 14 N -0.709 5.709 15 C 0.533 3.467 16 O -0.568 6.568 17 C -0.130 4.130 18 S -0.154 6.154 19 C -0.546 4.546 20 H 0.083 0.917 21 C 0.014 3.986 22 N -0.912 5.912 23 Si 0.998 3.002 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.257 1.257 27 C 0.015 3.985 28 H 0.253 0.747 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.415 0.585 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.116 0.884 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.418 0.582 41 H 0.112 0.888 42 H 0.109 0.891 43 H 0.271 0.729 44 H 0.106 0.894 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.589 -20.055 16.863 34.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.249 4.249 3 C 0.110 3.890 4 N -0.373 5.373 5 C 0.306 3.694 6 O -0.438 6.438 7 C -0.083 4.083 8 H 0.108 0.892 9 C -0.193 4.193 10 N -0.195 5.195 11 C -0.108 4.108 12 C -0.133 4.133 13 C 0.009 3.991 14 N -0.363 5.363 15 C 0.319 3.681 16 O -0.447 6.447 17 C -0.281 4.281 18 S 0.074 5.926 19 C -0.694 4.694 20 H 0.101 0.899 21 C -0.191 4.191 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.194 1.194 25 H -0.203 1.203 26 H -0.181 1.181 27 C -0.113 4.113 28 H 0.269 0.731 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.252 0.748 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.134 0.866 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.255 0.745 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.080 0.920 44 H 0.125 0.875 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -22.774 -20.982 15.379 34.574 hybrid contribution 0.766 1.174 0.781 1.604 sum -22.008 -19.808 16.160 33.732 Atomic orbital electron populations 1.25871 0.96733 0.95224 0.98658 1.22980 0.94479 1.04646 1.02796 1.17947 0.83847 0.84448 1.02713 1.45911 1.06903 1.10495 1.73988 1.20816 0.81917 0.91298 0.75372 1.90714 1.56088 1.47262 1.49735 1.22317 0.91578 0.92694 1.01708 0.89188 1.21747 1.01808 1.02333 0.93441 1.68638 1.06470 1.18742 1.25662 1.23800 0.96465 0.99547 0.90995 1.23149 0.99859 0.95189 0.95139 1.21371 0.90036 0.90073 0.97645 1.45715 1.39003 1.32504 1.19105 1.20073 0.82917 0.81116 0.84025 1.90693 1.56825 1.72579 1.24594 1.23376 1.00594 0.99983 1.04123 1.85579 1.48468 1.36812 1.21784 1.23215 1.22226 1.19299 1.04671 0.89862 1.26116 0.99973 0.98023 0.94954 1.70188 1.42690 1.31019 1.10936 0.84960 0.77340 0.76866 0.78855 1.19396 1.20332 1.18123 1.24208 0.96257 0.90346 1.00534 0.73105 0.89732 0.89542 0.74832 0.90110 0.89813 0.92253 0.90970 0.89913 0.86574 0.92399 0.91888 0.74520 0.87006 0.87249 0.92027 0.87525 0.89849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 19.25 74.32 1.43 0.41 16 2 C -0.25 -2.64 13.46 31.13 0.42 -2.22 16 3 C 0.23 2.85 6.15 84.57 0.52 3.37 16 4 N -0.72 -8.16 5.41 -472.12 -2.55 -10.71 16 5 C 0.52 8.67 6.96 87.66 0.61 9.28 16 6 O -0.56 -14.17 15.53 -3.02 -0.05 -14.22 16 7 C 0.03 0.37 2.07 44.17 0.09 0.46 16 8 H 0.09 0.88 7.70 -2.39 -0.02 0.86 16 9 C -0.14 -1.13 9.13 71.98 0.66 -0.47 16 10 N -0.47 -7.53 5.67 -883.52 -5.01 -12.54 16 11 C 0.02 0.36 6.30 86.41 0.54 0.91 16 12 C -0.11 -1.70 3.94 -10.15 -0.04 -1.74 16 13 C 0.13 2.75 5.53 86.38 0.48 3.23 16 14 N -0.71 -16.72 5.56 -463.06 -2.57 -19.29 16 15 C 0.53 19.13 7.85 87.66 0.69 19.82 16 16 O -0.57 -26.05 15.86 -3.04 -0.05 -26.10 16 17 C -0.13 -5.02 6.16 71.24 0.44 -4.58 16 18 S -0.15 -8.49 20.57 -56.49 -1.16 -9.65 16 19 C -0.55 -31.04 9.50 67.95 0.65 -30.39 16 20 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 21 C 0.01 0.80 5.49 84.86 0.47 1.26 16 22 N -0.91 -55.94 13.22 21.65 0.29 -55.65 16 23 Si 1.00 43.36 29.55 68.60 2.03 45.38 16 24 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 25 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 26 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 27 C 0.01 0.18 6.73 86.34 0.58 0.76 16 28 H 0.25 -0.21 7.80 -4.41 -0.03 -0.25 16 29 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.41 2.60 7.82 -92.70 -0.72 1.87 16 32 H 0.08 0.54 7.66 -2.39 -0.02 0.52 16 33 H 0.08 0.35 7.45 -2.39 -0.02 0.34 16 34 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.07 1.18 7.74 -2.38 -0.02 1.16 16 36 H 0.08 1.70 8.08 -2.39 -0.02 1.68 16 37 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.06 1.39 7.84 -2.39 -0.02 1.37 16 40 H 0.42 6.90 8.47 -92.71 -0.79 6.12 16 41 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 42 H 0.11 3.82 8.14 -2.40 -0.02 3.80 16 43 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 44 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.08 0.92 7.55 -2.39 -0.02 0.90 16 Total: -1.00 -83.85 400.58 -2.05 -85.90 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -0.50 Total: 16.76 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: 7.53 Total: 0.11 kcal Atomic # 7 Polarization: -88.35 SS G_CDS: -9.85 Total: -98.19 kcal Atomic # 8 Polarization: -40.22 SS G_CDS: -0.10 Total: -40.32 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 16 Polarization: -8.49 SS G_CDS: -1.16 Total: -9.65 kcal Total: -83.85 -2.05 -85.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481613319.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.176 kcal (2) G-P(sol) polarization free energy of solvation -83.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds