Wall clock time and date at job start Sat Apr 11 2020 05:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46719 * 2 1 4 4 C 1.52993 * 109.47222 * 120.00344 * 2 1 3 5 5 N 1.46494 * 109.47189 * 175.00544 * 4 2 1 6 6 C 1.36939 * 119.99932 * 180.02562 * 5 4 2 7 7 H 1.08003 * 120.00460 * 359.97438 * 6 5 4 8 8 C 1.38819 * 119.99997 * 179.97438 * 6 5 4 9 9 N 1.31619 * 119.99689 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99902 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47206 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.46824 * 119.99930 * 10 8 6 13 13 H 1.48499 * 109.46717 * 239.99783 * 10 8 6 14 14 N 1.46502 * 109.47279 * 240.00593 * 2 1 3 15 15 C 1.46496 * 119.99922 * 299.99849 * 14 2 1 16 16 C 1.34778 * 119.99871 * 119.99871 * 14 2 1 17 17 O 1.21630 * 120.00123 * 2.82470 * 16 14 2 18 18 C 1.47263 * 119.99545 * 182.82278 * 16 14 2 19 19 C 1.35216 * 123.14045 * 173.20754 * 18 16 14 20 20 S 1.70946 * 108.82521 * 179.97438 * 19 18 16 21 21 C 1.70762 * 91.13136 * 0.02562 * 20 19 18 22 22 C 1.50702 * 124.72023 * 180.02562 * 21 20 19 23 23 H 1.08998 * 109.87362 * 164.29533 * 22 21 20 24 24 C 1.54104 * 109.87619 * 285.30003 * 22 21 20 25 25 C 1.54811 * 104.18347 * 121.45244 * 24 22 21 26 26 C 1.54989 * 102.09622 * 20.88385 * 25 24 22 27 27 O 1.43740 * 109.88030 * 43.28728 * 22 21 20 28 28 N 1.28651 * 110.56084 * 359.97438 * 21 20 19 29 29 H 1.09004 * 109.47038 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47615 * 300.00103 * 1 2 3 31 31 H 1.09002 * 109.47347 * 59.99761 * 1 2 3 32 32 H 1.09002 * 109.46983 * 295.00503 * 4 2 1 33 33 H 1.09000 * 109.46986 * 54.99887 * 4 2 1 34 34 H 0.96999 * 120.00239 * 359.97438 * 5 4 2 35 35 H 0.97002 * 119.99704 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.47097 * 264.01721 * 15 14 2 37 37 H 1.09001 * 109.47228 * 24.01322 * 15 14 2 38 38 H 1.08995 * 109.47535 * 144.01773 * 15 14 2 39 39 H 1.07997 * 125.58210 * 359.72997 * 19 18 16 40 40 H 1.08994 * 110.48871 * 240.12904 * 24 22 21 41 41 H 1.08995 * 110.48732 * 2.78169 * 24 22 21 42 42 H 1.09008 * 110.90434 * 139.07959 * 25 24 22 43 43 H 1.09003 * 110.90851 * 262.64262 * 25 24 22 44 44 H 1.09006 * 110.62146 * 81.47328 * 26 25 24 45 45 H 1.08999 * 110.62089 * 204.47747 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5000 -0.8263 1.1905 6 6 4.1837 -1.4388 2.2067 7 1 3.6467 -1.8441 3.0515 8 6 5.5672 -1.5388 2.1509 9 7 6.2216 -1.0453 1.1210 10 14 6.4998 -2.3750 3.5367 11 1 5.5395 -2.8414 4.5688 12 1 7.2507 -3.5370 2.9973 13 1 7.4507 -1.4106 4.1457 14 7 2.0184 -0.6905 -1.1962 15 6 1.6645 -2.0930 -1.4282 16 6 2.7932 -0.0353 -2.0833 17 8 3.1295 1.1131 -1.8655 18 6 3.2327 -0.7101 -3.3163 19 6 3.8964 -0.0764 -4.3094 20 16 4.2260 -1.1985 -5.5562 21 6 3.4587 -2.4479 -4.6808 22 6 3.3233 -3.8713 -5.1567 23 1 3.0534 -4.5173 -4.3213 24 6 2.2451 -3.9565 -6.2544 25 6 2.9953 -4.5347 -7.4790 26 6 4.2240 -5.2097 -6.8181 27 8 4.5626 -4.3131 -5.7356 28 7 3.0132 -2.0051 -3.5581 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 1.7515 -0.1584 2.1369 33 1 1.6053 -1.7198 1.2950 34 1 3.9823 -0.4626 0.4316 35 1 7.1883 -1.1148 1.0822 36 1 2.4674 -2.7350 -1.0659 37 1 0.7430 -2.3281 -0.8956 38 1 1.5198 -2.2596 -2.4956 39 1 4.1696 0.9684 -4.3157 40 1 1.4412 -4.6260 -5.9485 41 1 1.8521 -2.9654 -6.4809 42 1 2.3812 -5.2695 -7.9999 43 1 3.3053 -3.7391 -8.1565 44 1 3.9593 -6.1935 -6.4304 45 1 5.0485 -5.2845 -7.5271 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482282749.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:56 Heat of formation + Delta-G solvation = -2.358777 kcal Electronic energy + Delta-G solvation = -27885.954999 eV Core-core repulsion = 24031.695800 eV Total energy + Delta-G solvation = -3854.259199 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.61370 -39.70496 -38.45909 -36.25383 -33.86590 -32.61880 -31.94423 -31.44651 -29.97039 -28.84598 -26.43349 -25.81704 -25.39218 -23.67739 -22.51171 -22.18795 -21.10740 -20.01661 -19.16747 -18.19007 -16.97211 -16.95269 -16.50592 -15.95225 -15.71934 -15.47385 -15.32413 -14.67575 -14.22621 -14.10209 -14.00389 -13.54443 -13.37719 -13.17844 -13.08150 -12.59591 -12.33891 -12.30550 -12.18257 -12.15161 -11.92231 -11.76130 -11.66762 -11.59266 -11.35878 -11.17440 -10.79074 -10.69670 -10.36627 -10.23080 -9.94055 -9.71461 -9.62214 -9.60441 -9.34312 -8.84953 -8.78735 -8.06954 -6.79759 -5.63755 -2.92949 0.55352 1.24269 1.66966 2.08884 3.24530 3.49206 3.51527 3.54169 3.57139 3.71682 3.96717 4.14393 4.48471 4.53696 4.67186 4.77204 4.87255 5.05888 5.15509 5.30148 5.31312 5.35460 5.38962 5.44535 5.50333 5.54982 5.61534 5.64567 5.69184 5.72326 5.76108 6.09510 6.14790 6.25077 6.31006 6.44953 6.47566 6.52884 6.60132 6.83631 7.11416 7.45673 7.78695 7.84510 8.53391 8.58314 9.64742 10.24728 10.59906 11.58464 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010893 B = 0.003601 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.904307 B = 7773.778269 C = 8898.428448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.124 3.876 3 H 0.100 0.900 4 C 0.145 3.855 5 N -0.728 5.728 6 C -0.238 4.238 7 H 0.069 0.931 8 C -0.014 4.014 9 N -0.928 5.928 10 Si 0.905 3.095 11 H -0.281 1.281 12 H -0.293 1.293 13 H -0.292 1.292 14 N -0.577 5.577 15 C 0.079 3.921 16 C 0.593 3.407 17 O -0.536 6.536 18 C 0.025 3.975 19 C -0.228 4.228 20 S 0.229 5.771 21 C 0.010 3.990 22 C 0.156 3.844 23 H 0.104 0.896 24 C -0.146 4.146 25 C -0.156 4.156 26 C 0.044 3.956 27 O -0.364 6.364 28 N -0.420 5.420 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.028 0.972 33 H 0.020 0.980 34 H 0.386 0.614 35 H 0.253 0.747 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.095 0.905 39 H 0.189 0.811 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.067 0.933 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.613 -6.191 -21.464 25.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.021 3.979 3 H 0.118 0.882 4 C 0.017 3.983 5 N -0.372 5.372 6 C -0.370 4.370 7 H 0.087 0.913 8 C -0.210 4.210 9 N -0.576 5.576 10 Si 0.736 3.264 11 H -0.206 1.206 12 H -0.220 1.220 13 H -0.219 1.219 14 N -0.308 5.308 15 C -0.063 4.063 16 C 0.378 3.622 17 O -0.413 6.413 18 C -0.110 4.110 19 C -0.370 4.370 20 S 0.486 5.514 21 C -0.268 4.268 22 C 0.095 3.905 23 H 0.121 0.879 24 C -0.185 4.185 25 C -0.194 4.194 26 C -0.032 4.032 27 O -0.282 6.282 28 N -0.137 5.137 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.045 0.955 33 H 0.038 0.962 34 H 0.221 0.779 35 H 0.063 0.937 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.113 0.887 39 H 0.207 0.793 40 H 0.107 0.893 41 H 0.100 0.900 42 H 0.104 0.896 43 H 0.098 0.902 44 H 0.085 0.915 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.976 -5.931 -21.690 25.022 hybrid contribution 0.418 -0.079 1.516 1.575 sum -10.557 -6.010 -20.174 23.550 Atomic orbital electron populations 1.22062 0.95104 1.02118 1.01995 1.21447 0.93273 0.98500 0.84694 0.88213 1.20986 0.87173 0.96732 0.93430 1.42308 0.99685 1.70056 1.25153 1.19250 0.89425 1.29268 0.99039 0.91269 1.24752 0.96462 1.01764 0.98005 1.69713 1.06967 1.50855 1.30114 0.86145 0.79966 0.78769 0.81495 1.20612 1.21984 1.21938 1.47459 1.49230 1.12746 1.21383 1.22169 1.00138 0.80939 1.03104 1.16994 0.78380 0.85212 0.81588 1.90799 1.56486 1.17425 1.76602 1.20417 1.03795 0.88841 0.97897 1.26670 1.04492 1.07186 0.98657 1.82677 1.51110 0.98232 1.19336 1.27010 1.03310 1.01174 0.95329 1.21006 0.84966 0.87694 0.96818 0.87875 1.23045 0.98142 1.03240 0.94103 1.23176 0.97259 1.01084 0.97850 1.23672 0.97665 0.93322 0.88537 1.89033 1.26622 1.63717 1.48873 1.67209 1.19349 1.11751 1.15364 0.92268 0.91329 0.92694 0.95478 0.96197 0.77927 0.93706 0.92041 0.92446 0.88713 0.79335 0.89303 0.89981 0.89645 0.90156 0.91486 0.88412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.18 37.16 0.34 -1.79 16 2 C 0.12 2.31 2.79 -67.93 -0.19 2.12 16 3 H 0.10 2.07 6.90 -51.93 -0.36 1.71 16 4 C 0.15 3.15 5.55 -4.05 -0.02 3.13 16 5 N -0.73 -20.06 5.43 -59.91 -0.33 -20.38 16 6 C -0.24 -7.09 9.99 -15.06 -0.15 -7.24 16 7 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 8 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 9 N -0.93 -30.13 13.06 55.49 0.72 -29.41 16 10 Si 0.90 23.56 29.55 -169.99 -5.02 18.53 16 11 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 13 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 14 N -0.58 -10.93 2.24 -175.27 -0.39 -11.32 16 15 C 0.08 1.31 8.59 59.84 0.51 1.83 16 16 C 0.59 12.18 7.35 -12.59 -0.09 12.09 16 17 O -0.54 -12.45 16.06 5.25 0.08 -12.37 16 18 C 0.03 0.45 6.49 -84.52 -0.55 -0.10 16 19 C -0.23 -3.43 10.62 29.66 0.31 -3.12 16 20 S 0.23 2.69 22.72 -107.50 -2.44 0.25 16 21 C 0.01 0.14 6.10 -13.61 -0.08 0.05 16 22 C 0.16 1.64 3.94 -27.31 -0.11 1.54 16 23 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 24 C -0.15 -1.02 6.63 -25.20 -0.17 -1.19 16 25 C -0.16 -0.84 7.16 -24.73 -0.18 -1.02 16 26 C 0.04 0.30 7.72 38.21 0.29 0.60 16 27 O -0.36 -4.06 11.01 -35.23 -0.39 -4.45 16 28 N -0.42 -6.69 6.76 -8.51 -0.06 -6.75 16 29 H 0.06 0.75 6.67 -51.93 -0.35 0.40 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.02 0.43 7.84 -51.93 -0.41 0.02 16 34 H 0.39 11.64 7.06 -40.82 -0.29 11.35 16 35 H 0.25 7.92 8.31 -40.82 -0.34 7.58 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.06 0.81 6.44 -51.93 -0.33 0.48 16 38 H 0.09 1.43 5.27 -51.93 -0.27 1.15 16 39 H 0.19 2.64 8.04 -52.49 -0.42 2.22 16 40 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.58 7.69 -51.93 -0.40 0.18 16 42 H 0.08 0.31 8.14 -51.92 -0.42 -0.12 16 43 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 379.25 15.07 5.72 5.72 Total: -1.00 -36.95 379.25 -8.88 -45.83 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -6.60 Total: 7.95 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: -0.17 Total: 6.39 kcal Atomic # 7 Polarization: -67.81 SS G_CDS: -0.05 Total: -67.86 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.30 Total: -16.81 kcal Atomic # 14 Polarization: 23.56 SS G_CDS: -5.02 Total: 18.53 kcal Atomic # 16 Polarization: 2.69 SS G_CDS: -2.44 Total: 0.25 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.95 -8.88 -45.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482282749.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.474 kcal (2) G-P(sol) polarization free energy of solvation -36.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds