Wall clock time and date at job start Sat Apr 11 2020 05:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46719 * 2 1 4 4 C 1.52993 * 109.47222 * 120.00344 * 2 1 3 5 5 N 1.46494 * 109.47189 * 175.00544 * 4 2 1 6 6 C 1.36939 * 119.99932 * 180.02562 * 5 4 2 7 7 H 1.08003 * 120.00460 * 359.97438 * 6 5 4 8 8 C 1.38819 * 119.99997 * 179.97438 * 6 5 4 9 9 N 1.31619 * 119.99689 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99902 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47206 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.46824 * 119.99930 * 10 8 6 13 13 H 1.48499 * 109.46717 * 239.99783 * 10 8 6 14 14 N 1.46502 * 109.47279 * 240.00593 * 2 1 3 15 15 C 1.46496 * 119.99922 * 299.99849 * 14 2 1 16 16 C 1.34778 * 119.99871 * 119.99871 * 14 2 1 17 17 O 1.21630 * 120.00123 * 2.82470 * 16 14 2 18 18 C 1.47263 * 119.99545 * 182.82278 * 16 14 2 19 19 C 1.35216 * 123.14045 * 173.20754 * 18 16 14 20 20 S 1.70946 * 108.82521 * 179.97438 * 19 18 16 21 21 C 1.70762 * 91.13136 * 0.02562 * 20 19 18 22 22 C 1.50702 * 124.72023 * 180.02562 * 21 20 19 23 23 H 1.08998 * 109.87362 * 164.29533 * 22 21 20 24 24 C 1.54104 * 109.87619 * 285.30003 * 22 21 20 25 25 C 1.54811 * 104.18347 * 121.45244 * 24 22 21 26 26 C 1.54989 * 102.09622 * 20.88385 * 25 24 22 27 27 O 1.43740 * 109.88030 * 43.28728 * 22 21 20 28 28 N 1.28651 * 110.56084 * 359.97438 * 21 20 19 29 29 H 1.09004 * 109.47038 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47615 * 300.00103 * 1 2 3 31 31 H 1.09002 * 109.47347 * 59.99761 * 1 2 3 32 32 H 1.09002 * 109.46983 * 295.00503 * 4 2 1 33 33 H 1.09000 * 109.46986 * 54.99887 * 4 2 1 34 34 H 0.96999 * 120.00239 * 359.97438 * 5 4 2 35 35 H 0.97002 * 119.99704 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.47097 * 264.01721 * 15 14 2 37 37 H 1.09001 * 109.47228 * 24.01322 * 15 14 2 38 38 H 1.08995 * 109.47535 * 144.01773 * 15 14 2 39 39 H 1.07997 * 125.58210 * 359.72997 * 19 18 16 40 40 H 1.08994 * 110.48871 * 240.12904 * 24 22 21 41 41 H 1.08995 * 110.48732 * 2.78169 * 24 22 21 42 42 H 1.09008 * 110.90434 * 139.07959 * 25 24 22 43 43 H 1.09003 * 110.90851 * 262.64262 * 25 24 22 44 44 H 1.09006 * 110.62146 * 81.47328 * 26 25 24 45 45 H 1.08999 * 110.62089 * 204.47747 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5000 -0.8263 1.1905 6 6 4.1837 -1.4388 2.2067 7 1 3.6467 -1.8441 3.0515 8 6 5.5672 -1.5388 2.1509 9 7 6.2216 -1.0453 1.1210 10 14 6.4998 -2.3750 3.5367 11 1 5.5395 -2.8414 4.5688 12 1 7.2507 -3.5370 2.9973 13 1 7.4507 -1.4106 4.1457 14 7 2.0184 -0.6905 -1.1962 15 6 1.6645 -2.0930 -1.4282 16 6 2.7932 -0.0353 -2.0833 17 8 3.1295 1.1131 -1.8655 18 6 3.2327 -0.7101 -3.3163 19 6 3.8964 -0.0764 -4.3094 20 16 4.2260 -1.1985 -5.5562 21 6 3.4587 -2.4479 -4.6808 22 6 3.3233 -3.8713 -5.1567 23 1 3.0534 -4.5173 -4.3213 24 6 2.2451 -3.9565 -6.2544 25 6 2.9953 -4.5347 -7.4790 26 6 4.2240 -5.2097 -6.8181 27 8 4.5626 -4.3131 -5.7356 28 7 3.0132 -2.0051 -3.5581 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 1.7515 -0.1584 2.1369 33 1 1.6053 -1.7198 1.2950 34 1 3.9823 -0.4626 0.4316 35 1 7.1883 -1.1148 1.0822 36 1 2.4674 -2.7350 -1.0659 37 1 0.7430 -2.3281 -0.8956 38 1 1.5198 -2.2596 -2.4956 39 1 4.1696 0.9684 -4.3157 40 1 1.4412 -4.6260 -5.9485 41 1 1.8521 -2.9654 -6.4809 42 1 2.3812 -5.2695 -7.9999 43 1 3.3053 -3.7391 -8.1565 44 1 3.9593 -6.1935 -6.4304 45 1 5.0485 -5.2845 -7.5271 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482282749.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:55 Heat of formation + Delta-G solvation = -28.538059 kcal Electronic energy + Delta-G solvation = -27887.090218 eV Core-core repulsion = 24031.695800 eV Total energy + Delta-G solvation = -3855.394418 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.86416 -40.60258 -39.68081 -37.89120 -35.86897 -33.65127 -33.24885 -32.52010 -31.78709 -29.74678 -27.83528 -27.42426 -26.81340 -24.76987 -24.29391 -22.94742 -22.09099 -21.28148 -20.47020 -19.55995 -19.12032 -17.94454 -17.35039 -17.24488 -16.91164 -16.78592 -16.65394 -16.20760 -15.59950 -15.42888 -15.20798 -14.97462 -14.63741 -14.55111 -14.15102 -14.08778 -13.89454 -13.76266 -13.44962 -13.24168 -13.05614 -12.84328 -12.81269 -12.72448 -12.62855 -12.52421 -12.14131 -12.12338 -11.84185 -11.74723 -11.67288 -11.26827 -11.00047 -10.91379 -10.71092 -10.50758 -9.97678 -9.55830 -9.03624 -7.96305 -5.27023 -0.58684 0.19234 0.55916 0.82459 1.41490 1.44282 1.54362 1.97861 2.23910 2.52527 2.54950 3.18723 3.36490 3.49340 3.61447 3.79893 3.91970 4.00021 4.06392 4.08717 4.19016 4.28157 4.36015 4.39377 4.44260 4.48761 4.55114 4.77933 4.81267 4.84333 4.86088 4.87197 4.95902 4.97248 5.07457 5.10784 5.16566 5.20332 5.30353 5.43968 5.65934 5.80901 6.22681 6.25227 6.42394 7.07040 7.28598 8.05328 8.28721 9.27382 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010893 B = 0.003601 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.904307 B = 7773.778269 C = 8898.428448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.125 3.875 3 H 0.071 0.929 4 C 0.143 3.857 5 N -0.744 5.744 6 C -0.243 4.243 7 H 0.081 0.919 8 C -0.081 4.081 9 N -0.973 5.973 10 Si 0.979 3.021 11 H -0.260 1.260 12 H -0.294 1.294 13 H -0.294 1.294 14 N -0.578 5.578 15 C 0.087 3.913 16 C 0.580 3.420 17 O -0.580 6.580 18 C -0.007 4.007 19 C -0.244 4.244 20 S 0.316 5.684 21 C 0.000 4.000 22 C 0.152 3.848 23 H 0.096 0.904 24 C -0.141 4.141 25 C -0.147 4.147 26 C 0.036 3.964 27 O -0.394 6.394 28 N -0.441 5.441 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.036 0.964 33 H 0.034 0.966 34 H 0.369 0.631 35 H 0.248 0.752 36 H 0.026 0.974 37 H 0.085 0.915 38 H 0.111 0.889 39 H 0.191 0.809 40 H 0.105 0.895 41 H 0.082 0.918 42 H 0.110 0.890 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.173 -8.072 -22.653 27.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.022 3.978 3 H 0.089 0.911 4 C 0.016 3.984 5 N -0.386 5.386 6 C -0.375 4.375 7 H 0.098 0.902 8 C -0.273 4.273 9 N -0.623 5.623 10 Si 0.807 3.193 11 H -0.184 1.184 12 H -0.221 1.221 13 H -0.221 1.221 14 N -0.308 5.308 15 C -0.055 4.055 16 C 0.367 3.633 17 O -0.461 6.461 18 C -0.142 4.142 19 C -0.387 4.387 20 S 0.574 5.426 21 C -0.279 4.279 22 C 0.091 3.909 23 H 0.113 0.887 24 C -0.180 4.180 25 C -0.184 4.184 26 C -0.040 4.040 27 O -0.313 6.313 28 N -0.158 5.158 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.200 0.800 35 H 0.057 0.943 36 H 0.045 0.955 37 H 0.103 0.897 38 H 0.129 0.871 39 H 0.208 0.792 40 H 0.124 0.876 41 H 0.100 0.900 42 H 0.128 0.872 43 H 0.103 0.897 44 H 0.094 0.906 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -12.605 -7.855 -22.870 27.269 hybrid contribution 0.913 0.468 1.792 2.065 sum -11.692 -7.387 -21.078 25.210 Atomic orbital electron populations 1.21975 0.90741 1.03731 1.03426 1.21430 0.96453 0.96438 0.83480 0.91061 1.21211 0.84088 0.97771 0.95342 1.42553 1.02097 1.69819 1.24133 1.19725 0.90003 1.28267 0.99475 0.90154 1.25685 0.97595 1.03201 1.00778 1.69917 1.06782 1.53034 1.32617 0.84992 0.78445 0.77235 0.78597 1.18437 1.22091 1.22122 1.47616 1.48664 1.13500 1.20976 1.22191 0.99799 0.78969 1.04546 1.17539 0.78000 0.85057 0.82725 1.90746 1.58162 1.19273 1.77878 1.20207 1.06164 0.90052 0.97797 1.26944 1.03809 1.08300 0.99646 1.82303 1.48719 0.95337 1.16245 1.27628 1.02368 1.02999 0.94866 1.21161 0.86115 0.85688 0.97910 0.88674 1.23064 0.97526 1.03916 0.93479 1.23184 0.96530 1.01604 0.97122 1.23954 0.98993 0.93184 0.87862 1.88996 1.27316 1.64663 1.50310 1.67137 1.20948 1.10947 1.16804 0.90464 0.89508 0.91699 0.94647 0.94849 0.79960 0.94323 0.95479 0.89688 0.87104 0.79155 0.87604 0.89961 0.87173 0.89690 0.90558 0.87129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 9.18 71.98 0.66 -2.96 16 2 C 0.13 4.72 2.79 44.99 0.13 4.85 16 3 H 0.07 3.10 6.90 -2.39 -0.02 3.08 16 4 C 0.14 6.20 5.55 86.38 0.48 6.68 16 5 N -0.74 -42.10 5.43 -343.46 -1.87 -43.97 16 6 C -0.24 -14.60 9.99 84.03 0.84 -13.76 16 7 H 0.08 4.54 7.83 -2.91 -0.02 4.52 16 8 C -0.08 -5.01 5.50 84.86 0.47 -4.54 16 9 N -0.97 -65.31 13.06 21.65 0.28 -65.02 16 10 Si 0.98 49.14 29.55 68.60 2.03 51.17 16 11 H -0.26 -12.04 7.11 99.48 0.71 -11.34 16 12 H -0.29 -14.68 7.11 99.48 0.71 -13.97 16 13 H -0.29 -14.73 7.11 99.48 0.71 -14.03 16 14 N -0.58 -22.50 2.24 -826.67 -1.86 -24.35 16 15 C 0.09 2.89 8.59 127.77 1.10 3.99 16 16 C 0.58 25.13 7.35 86.62 0.64 25.77 16 17 O -0.58 -28.81 16.06 -4.13 -0.07 -28.87 16 18 C -0.01 -0.26 6.49 40.56 0.26 0.00 16 19 C -0.24 -7.55 10.62 67.12 0.71 -6.84 16 20 S 0.32 7.09 22.72 -56.49 -1.28 5.81 16 21 C 0.00 -0.01 6.10 88.57 0.54 0.53 16 22 C 0.15 3.04 3.94 30.22 0.12 3.16 16 23 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 24 C -0.14 -1.62 6.63 31.59 0.21 -1.41 16 25 C -0.15 -1.11 7.16 31.89 0.23 -0.88 16 26 C 0.04 0.40 7.72 72.66 0.56 0.97 16 27 O -0.39 -8.28 11.01 -148.98 -1.64 -9.92 16 28 N -0.44 -14.33 6.76 -180.83 -1.22 -15.56 16 29 H 0.08 1.72 6.67 -2.39 -0.02 1.70 16 30 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.03 1.38 7.84 -2.39 -0.02 1.36 16 34 H 0.37 23.30 7.06 -92.71 -0.65 22.65 16 35 H 0.25 16.08 8.31 -92.71 -0.77 15.31 16 36 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.08 2.28 6.44 -2.39 -0.02 2.27 16 38 H 0.11 3.34 5.27 -2.39 -0.01 3.33 16 39 H 0.19 5.61 8.04 -2.91 -0.02 5.59 16 40 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.08 0.96 7.69 -2.39 -0.02 0.94 16 42 H 0.11 0.34 8.14 -2.38 -0.02 0.32 16 43 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 45 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -84.07 379.25 1.67 -82.40 By element: Atomic # 1 Polarization: 32.41 SS G_CDS: 0.36 Total: 32.77 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: 6.94 Total: 15.55 kcal Atomic # 7 Polarization: -144.24 SS G_CDS: -4.66 Total: -148.90 kcal Atomic # 8 Polarization: -37.09 SS G_CDS: -1.71 Total: -38.79 kcal Atomic # 14 Polarization: 49.14 SS G_CDS: 2.03 Total: 51.17 kcal Atomic # 16 Polarization: 7.09 SS G_CDS: -1.28 Total: 5.81 kcal Total: -84.07 1.67 -82.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482282749.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.861 kcal (2) G-P(sol) polarization free energy of solvation -84.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds