Wall clock time and date at job start Sat Apr 11 2020 05:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.46974 * 2 1 4 4 N 1.46498 * 109.47180 * 120.00703 * 2 1 3 5 5 C 1.34775 * 119.99685 * 274.99474 * 4 2 1 6 6 O 1.21283 * 120.00424 * 0.02562 * 5 4 2 7 7 C 1.50702 * 119.99786 * 180.02562 * 5 4 2 8 8 C 1.53003 * 109.46878 * 180.02562 * 7 5 4 9 9 N 1.46507 * 109.46969 * 180.02562 * 8 7 5 10 10 C 1.34770 * 120.00245 * 180.02562 * 9 8 7 11 11 O 1.21643 * 119.99815 * 359.97438 * 10 9 8 12 12 C 1.47183 * 120.00246 * 179.97438 * 10 9 8 13 13 C 1.44427 * 123.45971 * 179.72697 * 12 10 9 14 14 C 1.32777 * 113.07961 * 179.81157 * 13 12 10 15 15 S 1.75494 * 110.57845 * 0.43727 * 14 13 12 16 16 C 1.36004 * 123.46406 * 0.02562 * 12 10 9 17 17 C 1.53004 * 109.46769 * 240.00654 * 2 1 3 18 18 H 1.08995 * 109.47216 * 299.99814 * 17 2 1 19 19 C 1.52999 * 109.47083 * 179.97438 * 17 2 1 20 20 N 1.46498 * 109.47065 * 59.99703 * 17 2 1 21 21 C 1.36943 * 119.99752 * 204.72207 * 20 17 2 22 22 H 1.08002 * 119.99793 * 0.27665 * 21 20 17 23 23 C 1.38811 * 120.00012 * 180.27737 * 21 20 17 24 24 N 1.31624 * 119.99698 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00072 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47159 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.47290 * 120.00044 * 25 23 21 28 28 H 1.48503 * 109.47163 * 240.00049 * 25 23 21 29 29 H 1.09003 * 109.46657 * 299.99141 * 1 2 3 30 30 H 1.08994 * 109.47387 * 59.99348 * 1 2 3 31 31 H 1.08994 * 109.46974 * 180.02562 * 1 2 3 32 32 H 0.97000 * 119.99792 * 95.00136 * 4 2 1 33 33 H 1.09004 * 109.46965 * 300.00190 * 7 5 4 34 34 H 1.08994 * 109.47464 * 60.00281 * 7 5 4 35 35 H 1.08998 * 109.46943 * 299.99345 * 8 7 5 36 36 H 1.08994 * 109.47547 * 60.00052 * 8 7 5 37 37 H 0.97000 * 119.99602 * 359.97438 * 9 8 7 38 38 H 1.07995 * 123.46209 * 359.97438 * 13 12 10 39 39 H 1.08005 * 124.70865 * 180.18304 * 14 13 12 40 40 H 1.08007 * 124.58593 * 0.02562 * 16 12 10 41 41 H 1.08996 * 109.47245 * 179.97438 * 19 17 2 42 42 H 1.08995 * 109.47098 * 300.00077 * 19 17 2 43 43 H 1.09003 * 109.47054 * 59.99725 * 19 17 2 44 44 H 0.97001 * 120.00384 * 25.00562 * 20 17 2 45 45 H 0.96999 * 119.99739 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1472 -0.0185 2.3570 6 8 1.8584 1.1582 2.4118 7 6 2.6501 -0.7289 3.5873 8 6 2.7009 0.2540 4.7587 9 7 3.1904 -0.4364 5.9546 10 6 3.3183 0.2356 7.1158 11 8 3.0278 1.4155 7.1709 12 6 3.8095 -0.4582 8.3173 13 6 3.9806 0.1895 9.5969 14 6 4.4315 -0.6302 10.5390 15 16 4.6790 -2.2412 9.8883 16 6 4.1545 -1.7737 8.3354 17 6 2.0399 -0.7211 -1.2494 18 1 1.6766 -1.7488 -1.2495 19 6 3.5699 -0.7206 -1.2498 20 7 1.5515 -0.0304 -2.4454 21 6 1.4261 -0.7121 -3.6265 22 1 1.6830 -1.7600 -3.6750 23 6 0.9687 -0.0563 -4.7612 24 7 0.6561 1.2210 -4.7020 25 14 0.7969 -0.9863 -6.3720 26 1 1.2091 -2.3991 -6.1743 27 1 -0.6181 -0.9421 -6.8207 28 1 1.6625 -0.3571 -7.4017 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 2.2491 -1.6319 1.1523 33 1 1.9778 -1.5512 3.8323 34 1 3.6493 -1.1206 3.3977 35 1 3.3730 1.0765 4.5140 36 1 1.7015 0.6455 4.9483 37 1 3.4217 -1.3774 5.9108 38 1 3.7616 1.2327 9.7702 39 1 4.6235 -0.3442 11.5627 40 1 4.1038 -2.4326 7.4811 41 1 3.9332 -1.2347 -2.1396 42 1 3.9329 0.3071 -1.2499 43 1 3.9337 -1.2343 -0.3598 44 1 1.3209 0.9108 -2.4018 45 1 0.3362 1.6792 -5.4948 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485159735.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:45 Heat of formation + Delta-G solvation = -37.505283 kcal Electronic energy + Delta-G solvation = -25770.138479 eV Core-core repulsion = 21914.355213 eV Total energy + Delta-G solvation = -3855.783266 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.31829 -39.70169 -37.30577 -36.84546 -35.40248 -33.96645 -32.10664 -31.45850 -30.08409 -29.17530 -28.40827 -25.76733 -24.21956 -24.00233 -22.49332 -21.66516 -20.38962 -20.08469 -19.47313 -18.56886 -17.59331 -17.36655 -17.05237 -16.22546 -15.64639 -15.52388 -15.09129 -14.93215 -14.61249 -14.01823 -13.76496 -13.65964 -13.56148 -13.47303 -13.30808 -13.12379 -12.96419 -12.88642 -12.45805 -12.17881 -11.91862 -11.77882 -11.64159 -11.61654 -11.20268 -10.98527 -10.86923 -10.72034 -10.29362 -10.21353 -9.93529 -9.84955 -9.64411 -9.59137 -9.42082 -9.05389 -8.92177 -8.79626 -7.01945 -5.80474 -3.10323 0.26631 1.03093 1.40513 1.57727 2.66187 2.68638 3.02516 3.38473 3.40803 3.46761 3.48424 4.20410 4.37674 4.55892 4.59699 4.74619 4.76645 4.79921 4.88831 5.13296 5.30197 5.31485 5.46460 5.58441 5.60375 5.65054 5.73074 5.73687 5.80572 5.86950 6.04954 6.07313 6.19052 6.35800 6.39210 6.48756 6.58924 6.78344 6.91779 6.99348 7.10810 7.62421 7.65789 7.88011 8.31255 8.37271 9.48512 10.03821 10.38638 11.41875 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.035636 B = 0.001542 C = 0.001504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.526853 B =18149.876782 C =18606.832810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.135 3.865 3 H 0.085 0.915 4 N -0.716 5.716 5 C 0.515 3.485 6 O -0.537 6.537 7 C -0.154 4.154 8 C 0.135 3.865 9 N -0.727 5.727 10 C 0.575 3.425 11 O -0.529 6.529 12 C -0.151 4.151 13 C -0.086 4.086 14 C -0.236 4.236 15 S 0.186 5.814 16 C -0.214 4.214 17 C 0.169 3.831 18 H 0.050 0.950 19 C -0.164 4.164 20 N -0.718 5.718 21 C -0.240 4.240 22 H 0.071 0.929 23 C -0.012 4.012 24 N -0.930 5.930 25 Si 0.907 3.093 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.046 0.954 30 H 0.080 0.920 31 H 0.050 0.950 32 H 0.397 0.603 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.397 0.603 38 H 0.155 0.845 39 H 0.171 0.829 40 H 0.170 0.830 41 H 0.054 0.946 42 H 0.047 0.953 43 H 0.035 0.965 44 H 0.385 0.615 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.630 -11.151 30.685 33.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.030 3.970 3 H 0.103 0.897 4 N -0.367 5.367 5 C 0.299 3.701 6 O -0.414 6.414 7 C -0.195 4.195 8 C 0.012 3.988 9 N -0.379 5.379 10 C 0.361 3.639 11 O -0.406 6.406 12 C -0.170 4.170 13 C -0.114 4.114 14 C -0.370 4.370 15 S 0.451 5.549 16 C -0.353 4.353 17 C 0.058 3.942 18 H 0.068 0.932 19 C -0.224 4.224 20 N -0.360 5.360 21 C -0.371 4.371 22 H 0.089 0.911 23 C -0.208 4.208 24 N -0.578 5.578 25 Si 0.738 3.262 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.066 0.934 30 H 0.099 0.901 31 H 0.069 0.931 32 H 0.231 0.769 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.232 0.768 38 H 0.173 0.827 39 H 0.188 0.812 40 H 0.188 0.812 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.054 0.946 44 H 0.220 0.780 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.689 -10.898 31.206 34.177 hybrid contribution -0.401 0.137 -1.767 1.817 sum 8.288 -10.761 29.440 32.422 Atomic orbital electron populations 1.22046 0.94903 1.01710 1.02397 1.21355 0.94462 0.97631 0.83530 0.89658 1.46066 1.66891 1.13896 1.09843 1.20186 0.78159 0.87374 0.84344 1.90759 1.49845 1.15881 1.84883 1.21817 1.03899 0.99962 0.93813 1.21078 1.01605 0.94393 0.81768 1.45829 1.68106 1.14013 1.09950 1.17574 0.77782 0.86310 0.82277 1.90842 1.49507 1.15344 1.84923 1.20343 1.07881 0.93201 0.95569 1.21183 0.98916 1.01359 0.89983 1.25553 1.10201 0.96950 1.04336 1.83131 1.61596 1.10802 0.99342 1.25688 1.05904 0.99415 1.04258 1.20389 0.92067 0.95543 0.86187 0.93212 1.22450 0.99100 1.01114 0.99769 1.42302 1.78192 1.10780 1.04748 1.19232 1.36997 0.93886 0.86976 0.91103 1.24747 1.02035 0.95956 0.98049 1.69675 1.50697 1.08585 1.28803 0.86128 0.77309 0.78718 0.84052 1.20605 1.21873 1.21881 0.93444 0.90093 0.93125 0.76881 0.88297 0.88254 0.90152 0.90176 0.76834 0.82712 0.81193 0.81236 0.92664 0.93406 0.94647 0.78030 0.93472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.33 37.16 0.35 -2.23 16 2 C 0.13 2.22 2.21 -67.93 -0.15 2.07 16 3 H 0.09 1.62 7.58 -51.93 -0.39 1.22 16 4 N -0.72 -8.81 4.38 -53.81 -0.24 -9.05 16 5 C 0.51 6.53 7.79 -10.99 -0.09 6.45 16 6 O -0.54 -9.35 15.65 5.55 0.09 -9.26 16 7 C -0.15 -1.19 5.81 -27.88 -0.16 -1.35 16 8 C 0.13 1.36 4.96 -4.04 -0.02 1.34 16 9 N -0.73 -5.84 5.52 -61.46 -0.34 -6.18 16 10 C 0.58 6.23 7.79 -12.63 -0.10 6.13 16 11 O -0.53 -8.04 16.80 5.24 0.09 -7.95 16 12 C -0.15 -1.25 5.98 -104.63 -0.63 -1.88 16 13 C -0.09 -0.66 10.10 -39.02 -0.39 -1.06 16 14 C -0.24 -1.28 11.12 28.86 0.32 -0.96 16 15 S 0.19 0.82 23.02 -107.50 -2.48 -1.66 16 16 C -0.21 -1.15 10.38 29.93 0.31 -0.84 16 17 C 0.17 3.11 2.52 -67.93 -0.17 2.94 16 18 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 19 C -0.16 -2.79 9.33 37.16 0.35 -2.44 16 20 N -0.72 -17.15 4.43 -53.43 -0.24 -17.39 16 21 C -0.24 -6.39 9.93 -15.06 -0.15 -6.54 16 22 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 23 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 24 N -0.93 -27.61 13.06 55.49 0.72 -26.88 16 25 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.08 1.58 7.44 -51.93 -0.39 1.19 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.40 3.68 8.39 -40.82 -0.34 3.34 16 33 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 36 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 37 H 0.40 1.76 6.97 -40.82 -0.28 1.48 16 38 H 0.16 1.22 8.06 -52.49 -0.42 0.79 16 39 H 0.17 0.53 8.06 -52.48 -0.42 0.11 16 40 H 0.17 0.43 7.01 -52.48 -0.37 0.06 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.03 0.47 7.45 -51.93 -0.39 0.09 16 44 H 0.39 9.99 7.58 -40.82 -0.31 9.68 16 45 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 394.30 15.07 5.94 5.94 Total: -1.00 -35.17 394.30 -8.76 -43.93 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -6.66 Total: 10.39 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -0.63 Total: 1.19 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: -0.09 Total: -59.50 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: 0.17 Total: -17.21 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.48 Total: -1.66 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.17 -8.76 -43.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485159735.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.426 kcal (2) G-P(sol) polarization free energy of solvation -35.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds