Wall clock time and date at job start Sat Apr 11 2020 05:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.46974 * 2 1 4 4 N 1.46498 * 109.47180 * 120.00703 * 2 1 3 5 5 C 1.34775 * 119.99685 * 274.99474 * 4 2 1 6 6 O 1.21283 * 120.00424 * 0.02562 * 5 4 2 7 7 C 1.50702 * 119.99786 * 180.02562 * 5 4 2 8 8 C 1.53003 * 109.46878 * 180.02562 * 7 5 4 9 9 N 1.46507 * 109.46969 * 180.02562 * 8 7 5 10 10 C 1.34770 * 120.00245 * 180.02562 * 9 8 7 11 11 O 1.21643 * 119.99815 * 359.97438 * 10 9 8 12 12 C 1.47183 * 120.00246 * 179.97438 * 10 9 8 13 13 C 1.44427 * 123.45971 * 179.72697 * 12 10 9 14 14 C 1.32777 * 113.07961 * 179.81157 * 13 12 10 15 15 S 1.75494 * 110.57845 * 0.43727 * 14 13 12 16 16 C 1.36004 * 123.46406 * 0.02562 * 12 10 9 17 17 C 1.53004 * 109.46769 * 240.00654 * 2 1 3 18 18 H 1.08995 * 109.47216 * 299.99814 * 17 2 1 19 19 C 1.52999 * 109.47083 * 179.97438 * 17 2 1 20 20 N 1.46498 * 109.47065 * 59.99703 * 17 2 1 21 21 C 1.36943 * 119.99752 * 204.72207 * 20 17 2 22 22 H 1.08002 * 119.99793 * 0.27665 * 21 20 17 23 23 C 1.38811 * 120.00012 * 180.27737 * 21 20 17 24 24 N 1.31624 * 119.99698 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00072 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47159 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.47290 * 120.00044 * 25 23 21 28 28 H 1.48503 * 109.47163 * 240.00049 * 25 23 21 29 29 H 1.09003 * 109.46657 * 299.99141 * 1 2 3 30 30 H 1.08994 * 109.47387 * 59.99348 * 1 2 3 31 31 H 1.08994 * 109.46974 * 180.02562 * 1 2 3 32 32 H 0.97000 * 119.99792 * 95.00136 * 4 2 1 33 33 H 1.09004 * 109.46965 * 300.00190 * 7 5 4 34 34 H 1.08994 * 109.47464 * 60.00281 * 7 5 4 35 35 H 1.08998 * 109.46943 * 299.99345 * 8 7 5 36 36 H 1.08994 * 109.47547 * 60.00052 * 8 7 5 37 37 H 0.97000 * 119.99602 * 359.97438 * 9 8 7 38 38 H 1.07995 * 123.46209 * 359.97438 * 13 12 10 39 39 H 1.08005 * 124.70865 * 180.18304 * 14 13 12 40 40 H 1.08007 * 124.58593 * 0.02562 * 16 12 10 41 41 H 1.08996 * 109.47245 * 179.97438 * 19 17 2 42 42 H 1.08995 * 109.47098 * 300.00077 * 19 17 2 43 43 H 1.09003 * 109.47054 * 59.99725 * 19 17 2 44 44 H 0.97001 * 120.00384 * 25.00562 * 20 17 2 45 45 H 0.96999 * 119.99739 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1472 -0.0185 2.3570 6 8 1.8584 1.1582 2.4118 7 6 2.6501 -0.7289 3.5873 8 6 2.7009 0.2540 4.7587 9 7 3.1904 -0.4364 5.9546 10 6 3.3183 0.2356 7.1158 11 8 3.0278 1.4155 7.1709 12 6 3.8095 -0.4582 8.3173 13 6 3.9806 0.1895 9.5969 14 6 4.4315 -0.6302 10.5390 15 16 4.6790 -2.2412 9.8883 16 6 4.1545 -1.7737 8.3354 17 6 2.0399 -0.7211 -1.2494 18 1 1.6766 -1.7488 -1.2495 19 6 3.5699 -0.7206 -1.2498 20 7 1.5515 -0.0304 -2.4454 21 6 1.4261 -0.7121 -3.6265 22 1 1.6830 -1.7600 -3.6750 23 6 0.9687 -0.0563 -4.7612 24 7 0.6561 1.2210 -4.7020 25 14 0.7969 -0.9863 -6.3720 26 1 1.2091 -2.3991 -6.1743 27 1 -0.6181 -0.9421 -6.8207 28 1 1.6625 -0.3571 -7.4017 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 2.2491 -1.6319 1.1523 33 1 1.9778 -1.5512 3.8323 34 1 3.6493 -1.1206 3.3977 35 1 3.3730 1.0765 4.5140 36 1 1.7015 0.6455 4.9483 37 1 3.4217 -1.3774 5.9108 38 1 3.7616 1.2327 9.7702 39 1 4.6235 -0.3442 11.5627 40 1 4.1038 -2.4326 7.4811 41 1 3.9332 -1.2347 -2.1396 42 1 3.9329 0.3071 -1.2499 43 1 3.9337 -1.2343 -0.3598 44 1 1.3209 0.9108 -2.4018 45 1 0.3362 1.6792 -5.4948 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485159735.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:44 Heat of formation + Delta-G solvation = -64.149907 kcal Electronic energy + Delta-G solvation = -25771.293876 eV Core-core repulsion = 21914.355213 eV Total energy + Delta-G solvation = -3856.938663 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.19380 -40.71517 -38.35945 -37.78875 -36.30912 -35.56750 -33.60615 -32.50532 -31.05976 -30.16007 -30.07086 -26.44518 -25.90692 -25.07090 -23.78065 -22.36573 -21.52578 -21.38798 -20.21434 -19.35228 -19.01495 -18.34229 -17.85604 -17.11676 -16.87511 -16.61672 -16.34421 -16.00651 -15.55087 -15.32225 -15.24213 -14.92934 -14.63504 -14.43306 -14.22313 -14.05257 -13.93200 -13.70094 -13.42505 -13.34544 -13.20381 -12.94884 -12.88200 -12.74049 -12.58872 -12.44392 -12.23613 -12.09614 -12.08489 -11.72268 -11.44224 -11.14266 -10.99043 -10.85310 -10.29491 -10.05722 -9.97531 -9.33473 -9.00195 -7.91405 -5.20309 -0.19979 0.64868 0.97016 0.99030 1.49580 1.49874 1.59687 1.68718 1.84847 2.31454 2.42380 2.62280 3.43234 3.60163 3.80030 3.87174 3.96307 4.01278 4.07846 4.10359 4.24041 4.31869 4.38002 4.47609 4.53700 4.61642 4.81719 4.83616 4.85151 4.90204 4.93942 4.98903 5.07317 5.15625 5.21926 5.26573 5.31682 5.33251 5.52886 5.54495 5.62922 6.29609 6.47869 6.64261 7.17064 7.34340 7.35851 8.10172 8.32494 9.32397 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.035636 B = 0.001542 C = 0.001504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.526853 B =18149.876782 C =18606.832810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.149 3.851 3 H 0.054 0.946 4 N -0.701 5.701 5 C 0.511 3.489 6 O -0.591 6.591 7 C -0.134 4.134 8 C 0.139 3.861 9 N -0.706 5.706 10 C 0.570 3.430 11 O -0.589 6.589 12 C -0.186 4.186 13 C -0.116 4.116 14 C -0.236 4.236 15 S 0.246 5.754 16 C -0.201 4.201 17 C 0.167 3.833 18 H 0.065 0.935 19 C -0.155 4.155 20 N -0.732 5.732 21 C -0.231 4.231 22 H 0.083 0.917 23 C -0.078 4.078 24 N -0.972 5.972 25 Si 0.971 3.029 26 H -0.261 1.261 27 H -0.298 1.298 28 H -0.299 1.299 29 H 0.045 0.955 30 H 0.047 0.953 31 H 0.067 0.933 32 H 0.419 0.581 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.419 0.581 38 H 0.137 0.863 39 H 0.190 0.810 40 H 0.203 0.797 41 H 0.042 0.958 42 H 0.028 0.972 43 H 0.079 0.921 44 H 0.370 0.630 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.191 -15.981 32.367 37.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.043 3.957 3 H 0.072 0.928 4 N -0.354 5.354 5 C 0.298 3.702 6 O -0.471 6.471 7 C -0.174 4.174 8 C 0.015 3.985 9 N -0.359 5.359 10 C 0.357 3.643 11 O -0.471 6.471 12 C -0.204 4.204 13 C -0.145 4.145 14 C -0.371 4.371 15 S 0.512 5.488 16 C -0.340 4.340 17 C 0.059 3.941 18 H 0.083 0.917 19 C -0.214 4.214 20 N -0.372 5.372 21 C -0.362 4.362 22 H 0.101 0.899 23 C -0.270 4.270 24 N -0.623 5.623 25 Si 0.801 3.199 26 H -0.185 1.185 27 H -0.225 1.225 28 H -0.226 1.226 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.256 0.744 33 H 0.157 0.843 34 H 0.156 0.844 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.258 0.742 38 H 0.155 0.845 39 H 0.208 0.792 40 H 0.220 0.780 41 H 0.061 0.939 42 H 0.047 0.953 43 H 0.098 0.902 44 H 0.202 0.798 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 10.299 -15.867 32.927 37.974 hybrid contribution -0.825 1.544 -2.116 2.747 sum 9.473 -14.323 30.811 35.273 Atomic orbital electron populations 1.21925 0.95364 1.02185 1.00701 1.20857 0.93941 0.96287 0.84607 0.92773 1.45789 1.66474 1.14705 1.08400 1.21066 0.76883 0.86826 0.85413 1.90758 1.52049 1.18638 1.85698 1.21751 1.06744 0.99265 0.89596 1.20833 0.99387 0.94824 0.83498 1.45561 1.66984 1.14812 1.08518 1.18088 0.76877 0.85794 0.83513 1.90805 1.52366 1.18009 1.85910 1.20151 1.11061 0.94533 0.94672 1.21193 1.00998 1.01310 0.90972 1.25852 1.08691 0.97696 1.04894 1.83004 1.59453 1.08711 0.97641 1.26102 1.03298 0.98412 1.06188 1.20593 0.92990 0.95680 0.84885 0.91723 1.22305 0.97435 1.00404 1.01295 1.42516 1.78465 1.10286 1.05971 1.19657 1.34526 0.94322 0.87731 0.89921 1.25545 1.03240 0.96788 1.01470 1.69844 1.52945 1.10324 1.29167 0.85102 0.76498 0.78382 0.79949 1.18546 1.22518 1.22645 0.93570 0.93371 0.91420 0.74367 0.84291 0.84360 0.93102 0.93007 0.74233 0.84500 0.79245 0.78043 0.93908 0.95265 0.90246 0.79818 0.94279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.86 9.33 71.98 0.67 -4.19 16 2 C 0.15 4.82 2.21 44.99 0.10 4.92 16 3 H 0.05 2.12 7.58 -2.39 -0.02 2.10 16 4 N -0.70 -15.34 4.38 -442.53 -1.94 -17.28 16 5 C 0.51 12.04 7.79 87.66 0.68 12.73 16 6 O -0.59 -21.02 15.65 -3.04 -0.05 -21.07 16 7 C -0.13 -1.57 5.81 29.85 0.17 -1.40 16 8 C 0.14 2.73 4.96 86.38 0.43 3.15 16 9 N -0.71 -10.22 5.52 -466.59 -2.58 -12.79 16 10 C 0.57 12.54 7.79 86.59 0.67 13.21 16 11 O -0.59 -19.41 16.80 -4.17 -0.07 -19.48 16 12 C -0.19 -2.94 5.98 -19.87 -0.12 -3.05 16 13 C -0.12 -1.83 10.10 22.67 0.23 -1.61 16 14 C -0.24 -2.19 11.12 66.64 0.74 -1.45 16 15 S 0.25 1.30 23.02 -56.49 -1.30 0.00 16 16 C -0.20 -1.51 10.38 67.30 0.70 -0.81 16 17 C 0.17 5.93 2.52 44.99 0.11 6.04 16 18 H 0.06 2.14 8.08 -2.39 -0.02 2.12 16 19 C -0.15 -4.92 9.33 71.98 0.67 -4.25 16 20 N -0.73 -35.23 4.43 -322.94 -1.43 -36.66 16 21 C -0.23 -12.20 9.93 84.03 0.83 -11.36 16 22 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 23 C -0.08 -4.41 5.50 84.86 0.47 -3.95 16 24 N -0.97 -59.44 13.06 21.65 0.28 -59.16 16 25 Si 0.97 45.32 29.55 68.60 2.03 47.35 16 26 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 27 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 28 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 29 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.05 1.94 7.44 -2.39 -0.02 1.93 16 31 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.42 5.74 8.39 -92.71 -0.78 4.96 16 33 H 0.14 0.66 8.14 -2.38 -0.02 0.64 16 34 H 0.14 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.05 1.31 8.10 -2.39 -0.02 1.29 16 36 H 0.05 1.32 8.10 -2.39 -0.02 1.30 16 37 H 0.42 2.08 6.97 -92.71 -0.65 1.43 16 38 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 39 H 0.19 0.83 8.06 -2.91 -0.02 0.80 16 40 H 0.20 -0.01 7.01 -2.91 -0.02 -0.03 16 41 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.08 1.81 7.45 -2.39 -0.02 1.79 16 44 H 0.37 19.94 7.58 -92.71 -0.70 19.23 16 45 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -83.80 394.30 0.22 -83.58 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: -1.10 Total: 27.53 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: 6.37 Total: 7.98 kcal Atomic # 7 Polarization: -120.23 SS G_CDS: -5.67 Total: -125.89 kcal Atomic # 8 Polarization: -40.43 SS G_CDS: -0.12 Total: -40.55 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -1.30 Total: 0.00 kcal Total: -83.80 0.22 -83.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485159735.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.431 kcal (2) G-P(sol) polarization free energy of solvation -83.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds