Wall clock time and date at job start Sat Apr 11 2020 05:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47184 * 2 1 4 4 C 1.53001 * 109.46990 * 119.99324 * 2 1 3 5 5 N 1.46501 * 109.46950 * 175.00171 * 4 2 1 6 6 C 1.34775 * 120.00120 * 180.02562 * 5 4 2 7 7 O 1.21637 * 119.99861 * 0.02562 * 6 5 4 8 8 C 1.47265 * 120.00601 * 179.97438 * 6 5 4 9 9 C 1.35198 * 123.14734 * 179.70418 * 8 6 5 10 10 S 1.70941 * 108.83109 * 179.87139 * 9 8 6 11 11 C 1.70771 * 91.12541 * 0.33351 * 10 9 8 12 12 C 1.50697 * 124.71716 * 179.83796 * 11 10 9 13 13 H 1.09006 * 110.33164 * 197.20856 * 12 11 10 14 14 C 1.54478 * 110.37170 * 74.96069 * 12 11 10 15 15 C 1.54510 * 104.06429 * 217.18889 * 14 12 11 16 16 C 1.54477 * 104.05976 * 359.97438 * 15 14 12 17 17 O 1.44418 * 104.80489 * 23.98325 * 16 15 14 18 18 N 1.28648 * 110.56088 * 359.80568 * 11 10 9 19 19 N 1.46498 * 109.47586 * 239.99850 * 2 1 3 20 20 C 1.46506 * 119.99743 * 300.00219 * 19 2 1 21 21 C 1.36932 * 120.00357 * 120.00022 * 19 2 1 22 22 H 1.07998 * 120.00116 * 23.09290 * 21 19 2 23 23 C 1.38818 * 120.00061 * 203.10299 * 21 19 2 24 24 N 1.31612 * 119.99850 * 12.98963 * 23 21 19 25 25 Si 1.86798 * 119.99556 * 192.98859 * 23 21 19 26 26 H 1.48504 * 109.47078 * 60.00198 * 25 23 21 27 27 H 1.48512 * 109.46763 * 179.97438 * 25 23 21 28 28 H 1.48490 * 109.47523 * 299.99784 * 25 23 21 29 29 H 1.08994 * 109.47329 * 299.99857 * 1 2 3 30 30 H 1.08996 * 109.47038 * 60.00563 * 1 2 3 31 31 H 1.09004 * 109.46670 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.47602 * 295.00582 * 4 2 1 33 33 H 1.09002 * 109.47020 * 55.00550 * 4 2 1 34 34 H 0.96999 * 120.00180 * 359.97438 * 5 4 2 35 35 H 1.08008 * 125.58305 * 0.02562 * 9 8 6 36 36 H 1.08996 * 110.51329 * 335.83425 * 14 12 11 37 37 H 1.09001 * 110.51353 * 98.40818 * 14 12 11 38 38 H 1.09000 * 110.51300 * 118.64466 * 15 14 12 39 39 H 1.09002 * 110.51019 * 241.21773 * 15 14 12 40 40 H 1.09009 * 110.37068 * 142.81437 * 16 15 14 41 41 H 1.09002 * 110.37465 * 265.03425 * 16 15 14 42 42 H 1.08999 * 109.47582 * 95.12586 * 20 19 2 43 43 H 1.09007 * 109.46939 * 215.12701 * 20 19 2 44 44 H 1.09003 * 109.46898 * 335.12069 * 20 19 2 45 45 H 0.97004 * 119.99955 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5000 -0.8262 1.1907 6 6 4.1730 -1.4289 2.1909 7 8 3.5681 -1.8859 3.1420 8 6 5.6407 -1.5351 2.1317 9 6 6.3791 -2.1206 3.1011 10 16 8.0288 -2.0445 2.6598 11 6 7.6387 -1.2271 1.2121 12 6 8.6441 -0.7697 0.1871 13 1 8.1992 -0.0262 -0.4744 14 6 9.1648 -1.9730 -0.6297 15 6 10.6589 -1.6528 -0.8591 16 6 10.8639 -0.2936 -0.1543 17 8 9.8153 -0.2299 0.8367 18 7 6.3670 -1.0567 1.1181 19 7 2.0185 -0.6906 -1.1961 20 6 1.6645 -2.0933 -1.4279 21 6 2.8057 -0.0252 -2.0975 22 1 3.3701 0.8411 -1.7854 23 6 2.8783 -0.4640 -3.4125 24 7 2.0111 -1.3469 -3.8604 25 14 4.2067 0.1988 -4.5462 26 1 5.5431 -0.1255 -3.9855 27 1 4.0688 -0.4238 -5.8874 28 1 4.0648 1.6720 -4.6669 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7516 -0.1582 2.1370 33 1 1.6054 -1.7197 1.2953 34 1 3.9824 -0.4627 0.4317 35 1 5.9902 -2.5660 4.0049 36 1 9.0551 -2.8966 -0.0614 37 1 8.6374 -2.0461 -1.5808 38 1 11.2878 -2.4181 -0.4040 39 1 10.8722 -1.5685 -1.9247 40 1 11.8421 -0.2586 0.3255 41 1 10.7632 0.5234 -0.8688 42 1 0.7892 -2.1450 -2.0754 43 1 2.5004 -2.6048 -1.9053 44 1 1.4408 -2.5737 -0.4754 45 1 2.0620 -1.6538 -4.7792 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485304164.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:53 Heat of formation + Delta-G solvation = -13.061447 kcal Electronic energy + Delta-G solvation = -27646.347602 eV Core-core repulsion = 23791.624301 eV Total energy + Delta-G solvation = -3854.723301 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.47480 -39.59755 -38.35707 -36.64108 -33.74673 -32.52012 -31.99338 -31.65751 -29.32579 -28.84351 -26.68350 -25.98695 -24.86213 -23.40693 -22.83701 -21.91718 -20.95779 -19.73001 -19.28427 -18.44447 -16.90482 -16.69833 -16.45060 -16.32183 -15.54080 -15.42807 -15.22740 -14.95041 -14.39491 -14.13656 -14.04965 -13.68527 -13.56513 -13.05488 -12.71987 -12.70632 -12.27205 -12.12664 -12.02140 -11.95694 -11.84126 -11.65700 -11.40527 -11.05699 -11.01045 -10.80023 -10.72576 -10.41190 -10.27484 -10.26604 -9.88466 -9.86609 -9.75562 -9.74219 -9.67858 -8.97692 -8.55770 -8.44773 -6.76504 -5.71584 -3.18718 0.46922 1.16115 1.59657 2.02484 3.24569 3.37303 3.42614 3.43295 3.59134 3.75283 4.09102 4.28379 4.48355 4.56472 4.63341 4.84224 4.96107 5.04103 5.19114 5.30978 5.37614 5.40209 5.44242 5.45100 5.54158 5.62282 5.69825 5.70789 5.83938 5.95870 6.12605 6.22055 6.33305 6.41345 6.46275 6.78468 6.86833 6.89807 7.05062 7.39428 7.41690 7.75042 7.80968 8.09328 8.39528 8.61498 9.23566 9.86550 10.36165 11.32723 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009368 B = 0.004296 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2988.216432 B = 6516.846170 C = 8959.540518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.157 3.843 3 H 0.069 0.931 4 C 0.104 3.896 5 N -0.684 5.684 6 C 0.586 3.414 7 O -0.553 6.553 8 C 0.020 3.980 9 C -0.234 4.234 10 S 0.231 5.769 11 C 0.025 3.975 12 C 0.153 3.847 13 H 0.107 0.893 14 C -0.147 4.147 15 C -0.154 4.154 16 C 0.045 3.955 17 O -0.367 6.367 18 N -0.423 5.423 19 N -0.593 5.593 20 C 0.165 3.835 21 C -0.256 4.256 22 H 0.067 0.933 23 C 0.006 3.994 24 N -0.905 5.905 25 Si 0.902 3.098 26 H -0.284 1.284 27 H -0.292 1.292 28 H -0.284 1.284 29 H 0.041 0.959 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.420 0.580 35 H 0.190 0.810 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.096 0.904 41 H 0.066 0.934 42 H 0.030 0.970 43 H 0.038 0.962 44 H -0.002 1.002 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.198 -1.062 9.801 18.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.049 3.951 3 H 0.087 0.913 4 C -0.022 4.022 5 N -0.333 5.333 6 C 0.368 3.632 7 O -0.433 6.433 8 C -0.115 4.115 9 C -0.376 4.376 10 S 0.488 5.512 11 C -0.255 4.255 12 C 0.092 3.908 13 H 0.124 0.876 14 C -0.186 4.186 15 C -0.192 4.192 16 C -0.031 4.031 17 O -0.286 6.286 18 N -0.139 5.139 19 N -0.316 5.316 20 C 0.021 3.979 21 C -0.386 4.386 22 H 0.085 0.915 23 C -0.193 4.193 24 N -0.549 5.549 25 Si 0.732 3.268 26 H -0.210 1.210 27 H -0.218 1.218 28 H -0.210 1.210 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.258 0.742 35 H 0.207 0.793 36 H 0.097 0.903 37 H 0.111 0.889 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.115 0.885 41 H 0.084 0.916 42 H 0.048 0.952 43 H 0.057 0.943 44 H 0.016 0.984 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 16.440 -1.423 10.447 19.530 hybrid contribution -0.230 0.412 -1.342 1.423 sum 16.209 -1.011 9.105 18.619 Atomic orbital electron populations 1.22181 0.97368 1.01380 1.00598 1.20619 0.92616 0.95566 0.86327 0.91305 1.22043 0.79150 1.01472 0.99487 1.45774 1.08312 1.56535 1.22709 1.17048 0.84161 0.78866 0.83117 1.90766 1.68516 1.49841 1.34169 1.20506 0.96349 1.03331 0.91350 1.26701 0.98186 1.06762 1.05937 1.82758 1.03672 1.49795 1.14993 1.26568 0.94208 1.04078 1.00624 1.21254 0.84427 0.95850 0.89294 0.87569 1.23034 0.95799 0.98084 1.01677 1.22956 0.96160 0.98031 1.02053 1.23457 0.91714 0.96762 0.91200 1.89140 1.19168 1.83874 1.36384 1.66854 1.03771 1.18016 1.25256 1.43957 1.58162 1.07999 1.21443 1.20717 0.99715 0.83376 0.94096 1.19138 1.18675 1.11579 0.89192 0.91475 1.24994 0.98254 0.99505 0.96548 1.70060 1.35118 1.34288 1.15451 0.86385 0.81989 0.78428 0.80035 1.21028 1.21790 1.21005 0.93953 0.92153 0.93152 0.92235 0.91877 0.74201 0.79324 0.90268 0.88944 0.90294 0.89916 0.88542 0.91575 0.95160 0.94327 0.98360 0.93784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 9.20 37.16 0.34 -2.47 16 2 C 0.16 3.15 2.87 -67.93 -0.19 2.95 16 3 H 0.07 1.37 7.87 -51.93 -0.41 0.96 16 4 C 0.10 1.95 4.93 -4.04 -0.02 1.93 16 5 N -0.68 -13.24 5.38 -61.43 -0.33 -13.58 16 6 C 0.59 11.21 7.80 -12.59 -0.10 11.11 16 7 O -0.55 -11.50 16.71 5.25 0.09 -11.41 16 8 C 0.02 0.34 6.70 -84.53 -0.57 -0.22 16 9 C -0.23 -3.20 10.62 29.65 0.31 -2.88 16 10 S 0.23 2.58 22.69 -107.50 -2.44 0.14 16 11 C 0.02 0.34 6.26 -13.61 -0.09 0.26 16 12 C 0.15 1.81 3.81 -27.11 -0.10 1.71 16 13 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 14 C -0.15 -1.43 6.62 -25.16 -0.17 -1.59 16 15 C -0.15 -1.10 7.09 -25.16 -0.18 -1.28 16 16 C 0.05 0.35 7.63 37.93 0.29 0.64 16 17 O -0.37 -4.07 11.13 -35.23 -0.39 -4.46 16 18 N -0.42 -7.06 10.12 -8.51 -0.09 -7.14 16 19 N -0.59 -14.24 2.28 -173.47 -0.40 -14.64 16 20 C 0.17 4.07 8.00 59.85 0.48 4.55 16 21 C -0.26 -6.74 9.31 -15.06 -0.14 -6.88 16 22 H 0.07 1.72 7.82 -52.49 -0.41 1.31 16 23 C 0.01 0.15 5.10 -17.43 -0.09 0.07 16 24 N -0.90 -25.95 10.71 55.49 0.59 -25.35 16 25 Si 0.90 21.38 29.57 -169.99 -5.03 16.35 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 28 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 31 H 0.05 0.92 7.67 -51.93 -0.40 0.52 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 1.24 6.86 -51.93 -0.36 0.89 16 34 H 0.42 8.58 7.41 -40.82 -0.30 8.28 16 35 H 0.19 2.28 8.03 -52.48 -0.42 1.86 16 36 H 0.08 0.75 7.86 -51.93 -0.41 0.34 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.10 0.56 8.14 -51.92 -0.42 0.14 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.03 0.80 7.34 -51.93 -0.38 0.42 16 43 H 0.04 1.03 7.35 -51.93 -0.38 0.65 16 44 H 0.00 -0.05 6.53 -51.93 -0.34 -0.39 16 45 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 382.22 15.07 5.76 5.76 Total: -1.00 -31.44 382.22 -9.19 -40.64 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -6.75 Total: 5.81 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: -0.22 Total: 7.88 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: -0.22 Total: -60.71 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -0.30 Total: -15.87 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Atomic # 16 Polarization: 2.58 SS G_CDS: -2.44 Total: 0.14 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.44 -9.19 -40.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485304164.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.574 kcal (2) G-P(sol) polarization free energy of solvation -31.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds