Wall clock time and date at job start Sat Apr 11 2020 05:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47184 * 2 1 4 4 C 1.53001 * 109.46990 * 119.99324 * 2 1 3 5 5 N 1.46501 * 109.46950 * 175.00171 * 4 2 1 6 6 C 1.34775 * 120.00120 * 180.02562 * 5 4 2 7 7 O 1.21637 * 119.99861 * 0.02562 * 6 5 4 8 8 C 1.47265 * 120.00601 * 179.97438 * 6 5 4 9 9 C 1.35198 * 123.14734 * 179.70418 * 8 6 5 10 10 S 1.70941 * 108.83109 * 179.87139 * 9 8 6 11 11 C 1.70771 * 91.12541 * 0.33351 * 10 9 8 12 12 C 1.50697 * 124.71716 * 179.83796 * 11 10 9 13 13 H 1.09006 * 110.33164 * 197.20856 * 12 11 10 14 14 C 1.54478 * 110.37170 * 74.96069 * 12 11 10 15 15 C 1.54510 * 104.06429 * 217.18889 * 14 12 11 16 16 C 1.54477 * 104.05976 * 359.97438 * 15 14 12 17 17 O 1.44418 * 104.80489 * 23.98325 * 16 15 14 18 18 N 1.28648 * 110.56088 * 359.80568 * 11 10 9 19 19 N 1.46498 * 109.47586 * 239.99850 * 2 1 3 20 20 C 1.46506 * 119.99743 * 300.00219 * 19 2 1 21 21 C 1.36932 * 120.00357 * 120.00022 * 19 2 1 22 22 H 1.07998 * 120.00116 * 23.09290 * 21 19 2 23 23 C 1.38818 * 120.00061 * 203.10299 * 21 19 2 24 24 N 1.31612 * 119.99850 * 12.98963 * 23 21 19 25 25 Si 1.86798 * 119.99556 * 192.98859 * 23 21 19 26 26 H 1.48504 * 109.47078 * 60.00198 * 25 23 21 27 27 H 1.48512 * 109.46763 * 179.97438 * 25 23 21 28 28 H 1.48490 * 109.47523 * 299.99784 * 25 23 21 29 29 H 1.08994 * 109.47329 * 299.99857 * 1 2 3 30 30 H 1.08996 * 109.47038 * 60.00563 * 1 2 3 31 31 H 1.09004 * 109.46670 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.47602 * 295.00582 * 4 2 1 33 33 H 1.09002 * 109.47020 * 55.00550 * 4 2 1 34 34 H 0.96999 * 120.00180 * 359.97438 * 5 4 2 35 35 H 1.08008 * 125.58305 * 0.02562 * 9 8 6 36 36 H 1.08996 * 110.51329 * 335.83425 * 14 12 11 37 37 H 1.09001 * 110.51353 * 98.40818 * 14 12 11 38 38 H 1.09000 * 110.51300 * 118.64466 * 15 14 12 39 39 H 1.09002 * 110.51019 * 241.21773 * 15 14 12 40 40 H 1.09009 * 110.37068 * 142.81437 * 16 15 14 41 41 H 1.09002 * 110.37465 * 265.03425 * 16 15 14 42 42 H 1.08999 * 109.47582 * 95.12586 * 20 19 2 43 43 H 1.09007 * 109.46939 * 215.12701 * 20 19 2 44 44 H 1.09003 * 109.46898 * 335.12069 * 20 19 2 45 45 H 0.97004 * 119.99955 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5000 -0.8262 1.1907 6 6 4.1730 -1.4289 2.1909 7 8 3.5681 -1.8859 3.1420 8 6 5.6407 -1.5351 2.1317 9 6 6.3791 -2.1206 3.1011 10 16 8.0288 -2.0445 2.6598 11 6 7.6387 -1.2271 1.2121 12 6 8.6441 -0.7697 0.1871 13 1 8.1992 -0.0262 -0.4744 14 6 9.1648 -1.9730 -0.6297 15 6 10.6589 -1.6528 -0.8591 16 6 10.8639 -0.2936 -0.1543 17 8 9.8153 -0.2299 0.8367 18 7 6.3670 -1.0567 1.1181 19 7 2.0185 -0.6906 -1.1961 20 6 1.6645 -2.0933 -1.4279 21 6 2.8057 -0.0252 -2.0975 22 1 3.3701 0.8411 -1.7854 23 6 2.8783 -0.4640 -3.4125 24 7 2.0111 -1.3469 -3.8604 25 14 4.2067 0.1988 -4.5462 26 1 5.5431 -0.1255 -3.9855 27 1 4.0688 -0.4238 -5.8874 28 1 4.0648 1.6720 -4.6669 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7516 -0.1582 2.1370 33 1 1.6054 -1.7197 1.2953 34 1 3.9824 -0.4627 0.4317 35 1 5.9902 -2.5660 4.0049 36 1 9.0551 -2.8966 -0.0614 37 1 8.6374 -2.0461 -1.5808 38 1 11.2878 -2.4181 -0.4040 39 1 10.8722 -1.5685 -1.9247 40 1 11.8421 -0.2586 0.3255 41 1 10.7632 0.5234 -0.8688 42 1 0.7892 -2.1450 -2.0754 43 1 2.5004 -2.6048 -1.9053 44 1 1.4408 -2.5737 -0.4754 45 1 2.0620 -1.6538 -4.7792 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485304164.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:52 Heat of formation + Delta-G solvation = -34.232791 kcal Electronic energy + Delta-G solvation = -27647.265660 eV Core-core repulsion = 23791.624301 eV Total energy + Delta-G solvation = -3855.641360 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.64878 -40.54168 -39.63821 -38.36321 -35.46982 -33.75989 -33.29640 -32.60090 -31.18306 -29.76728 -28.05285 -28.01365 -25.98936 -24.98888 -24.18558 -22.73426 -21.93011 -21.15985 -20.74576 -19.69654 -18.86005 -17.74965 -17.52171 -17.23264 -17.16018 -16.69426 -16.48626 -16.22073 -15.87555 -15.57056 -15.15911 -14.84156 -14.72118 -14.58397 -14.45275 -13.92801 -13.90705 -13.56519 -13.07079 -13.03539 -12.89085 -12.78145 -12.74719 -12.65391 -12.53455 -12.33657 -12.27484 -12.14055 -11.80530 -11.67405 -11.53783 -11.28861 -11.04155 -10.84964 -10.71203 -10.61216 -10.17475 -9.83184 -8.77791 -7.78873 -5.27269 -0.60428 0.16908 0.53960 0.79377 1.47223 1.49093 1.55362 2.22588 2.22905 2.47916 2.53173 3.23895 3.35588 3.49875 3.62377 3.67252 3.90383 3.99862 4.02649 4.08926 4.17626 4.31704 4.33286 4.36139 4.55852 4.63708 4.69203 4.72469 4.74625 4.83925 4.90787 4.93330 5.01902 5.02215 5.12716 5.20837 5.31846 5.39327 5.52056 5.67437 5.68286 5.71925 6.26720 6.35101 6.61880 7.11009 7.18143 7.88268 8.33808 9.24200 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009368 B = 0.004296 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2988.216432 B = 6516.846170 C = 8959.540518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.156 3.844 3 H 0.071 0.929 4 C 0.113 3.887 5 N -0.690 5.690 6 C 0.584 3.416 7 O -0.576 6.576 8 C -0.014 4.014 9 C -0.234 4.234 10 S 0.328 5.672 11 C 0.003 3.997 12 C 0.150 3.850 13 H 0.090 0.910 14 C -0.148 4.148 15 C -0.146 4.146 16 C 0.038 3.962 17 O -0.381 6.381 18 N -0.458 5.458 19 N -0.603 5.603 20 C 0.187 3.813 21 C -0.255 4.255 22 H 0.072 0.928 23 C -0.049 4.049 24 N -0.937 5.937 25 Si 0.961 3.039 26 H -0.277 1.277 27 H -0.299 1.299 28 H -0.277 1.277 29 H 0.078 0.922 30 H 0.042 0.958 31 H 0.045 0.955 32 H 0.079 0.921 33 H 0.053 0.947 34 H 0.414 0.586 35 H 0.204 0.796 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.120 0.880 41 H 0.070 0.930 42 H 0.006 0.994 43 H 0.008 0.992 44 H 0.018 0.982 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.567 -0.810 11.133 21.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.049 3.951 3 H 0.089 0.911 4 C -0.012 4.012 5 N -0.338 5.338 6 C 0.368 3.632 7 O -0.458 6.458 8 C -0.150 4.150 9 C -0.377 4.377 10 S 0.586 5.414 11 C -0.276 4.276 12 C 0.089 3.911 13 H 0.108 0.892 14 C -0.187 4.187 15 C -0.184 4.184 16 C -0.037 4.037 17 O -0.300 6.300 18 N -0.175 5.175 19 N -0.326 5.326 20 C 0.042 3.958 21 C -0.385 4.385 22 H 0.090 0.910 23 C -0.244 4.244 24 N -0.584 5.584 25 Si 0.790 3.210 26 H -0.202 1.202 27 H -0.225 1.225 28 H -0.203 1.203 29 H 0.097 0.903 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.071 0.929 34 H 0.251 0.749 35 H 0.221 0.779 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.138 0.862 41 H 0.088 0.912 42 H 0.024 0.976 43 H 0.027 0.973 44 H 0.037 0.963 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 18.828 -1.145 11.808 22.254 hybrid contribution -0.861 0.343 -1.636 1.880 sum 17.967 -0.802 10.172 20.662 Atomic orbital electron populations 1.22053 0.95564 1.01430 1.01524 1.20788 0.93910 0.95352 0.85060 0.91109 1.21924 0.79061 1.00908 0.99333 1.45827 1.08445 1.56860 1.22713 1.17380 0.85352 0.78004 0.82449 1.90731 1.69405 1.50812 1.34816 1.20258 0.95373 1.06255 0.93076 1.27043 1.00000 1.05070 1.05551 1.82377 1.00435 1.46851 1.11755 1.26960 0.93876 1.04367 1.02406 1.21235 0.84533 0.96392 0.88911 0.89194 1.23052 0.97558 0.97263 1.00854 1.22961 0.94283 0.98098 1.03019 1.23720 0.91716 0.97228 0.91083 1.89111 1.19454 1.83968 1.37455 1.66804 1.05169 1.19417 1.26099 1.44087 1.58367 1.07928 1.22200 1.20354 0.97319 0.83970 0.94170 1.19441 1.18421 1.11173 0.89494 0.91029 1.25700 1.00300 1.00320 0.98096 1.70226 1.36857 1.35999 1.15303 0.85433 0.79862 0.77958 0.77786 1.20250 1.22503 1.20264 0.90298 0.93867 0.93553 0.90277 0.92870 0.74932 0.77933 0.90017 0.89857 0.88628 0.88709 0.86217 0.91209 0.97603 0.97309 0.96333 0.94537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.13 9.20 71.98 0.66 -4.47 16 2 C 0.16 6.16 2.87 44.99 0.13 6.29 16 3 H 0.07 2.77 7.87 -2.39 -0.02 2.75 16 4 C 0.11 4.17 4.93 86.38 0.43 4.60 16 5 N -0.69 -26.90 5.38 -466.52 -2.51 -29.41 16 6 C 0.58 22.45 7.80 86.62 0.68 23.13 16 7 O -0.58 -23.85 16.71 -4.15 -0.07 -23.92 16 8 C -0.01 -0.47 6.70 40.55 0.27 -0.20 16 9 C -0.23 -6.06 10.62 67.12 0.71 -5.34 16 10 S 0.33 6.55 22.69 -56.49 -1.28 5.27 16 11 C 0.00 0.07 6.26 88.57 0.55 0.62 16 12 C 0.15 3.45 3.81 30.35 0.12 3.57 16 13 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 14 C -0.15 -2.68 6.62 31.61 0.21 -2.47 16 15 C -0.15 -1.70 7.09 31.61 0.22 -1.48 16 16 C 0.04 0.49 7.63 72.48 0.55 1.05 16 17 O -0.38 -7.75 11.13 -148.98 -1.66 -9.41 16 18 N -0.46 -15.35 10.12 -180.84 -1.83 -17.18 16 19 N -0.60 -29.32 2.28 -702.75 -1.61 -30.92 16 20 C 0.19 9.43 8.00 127.77 1.02 10.45 16 21 C -0.26 -13.57 9.31 84.04 0.78 -12.79 16 22 H 0.07 3.68 7.82 -2.91 -0.02 3.66 16 23 C -0.05 -2.71 5.10 84.86 0.43 -2.27 16 24 N -0.94 -55.27 10.71 21.65 0.23 -55.03 16 25 Si 0.96 44.56 29.57 68.60 2.03 46.59 16 26 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 27 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 28 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 29 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.05 1.65 7.67 -2.38 -0.02 1.63 16 32 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 33 H 0.05 2.07 6.86 -2.39 -0.02 2.05 16 34 H 0.41 17.23 7.41 -92.71 -0.69 16.55 16 35 H 0.20 4.53 8.03 -2.91 -0.02 4.51 16 36 H 0.08 1.40 7.86 -2.39 -0.02 1.38 16 37 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.12 0.99 8.14 -2.38 -0.02 0.97 16 41 H 0.07 0.84 8.14 -2.39 -0.02 0.83 16 42 H 0.01 0.32 7.34 -2.39 -0.02 0.30 16 43 H 0.01 0.46 7.35 -2.38 -0.02 0.44 16 44 H 0.02 0.83 6.53 -2.39 -0.02 0.82 16 45 H 0.25 14.22 8.31 -92.70 -0.77 13.45 16 Total: -1.00 -69.14 382.22 0.40 -68.75 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: 0.32 Total: 24.58 kcal Atomic # 6 Polarization: 13.91 SS G_CDS: 6.77 Total: 20.68 kcal Atomic # 7 Polarization: -126.83 SS G_CDS: -5.72 Total: -132.55 kcal Atomic # 8 Polarization: -31.60 SS G_CDS: -1.73 Total: -33.32 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Atomic # 16 Polarization: 6.55 SS G_CDS: -1.28 Total: 5.27 kcal Total: -69.14 0.40 -68.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485304164.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.514 kcal (2) G-P(sol) polarization free energy of solvation -69.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds