Wall clock time and date at job start Sat Apr 11 2020 05:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46892 * 2 1 4 4 C 1.52999 * 109.46990 * 240.00521 * 2 1 3 5 5 N 1.46503 * 109.47267 * 184.99903 * 4 2 1 6 6 C 1.34771 * 120.00494 * 179.97438 * 5 4 2 7 7 O 1.21632 * 119.99652 * 359.97438 * 6 5 4 8 8 C 1.47269 * 120.00390 * 179.97438 * 6 5 4 9 9 C 1.35204 * 123.14306 * 179.70059 * 8 6 5 10 10 S 1.70936 * 108.82769 * 179.90439 * 9 8 6 11 11 C 1.70771 * 91.12853 * 0.30777 * 10 9 8 12 12 C 1.50700 * 124.71864 * 179.82182 * 11 10 9 13 13 H 1.09002 * 110.33053 * 197.24837 * 12 11 10 14 14 C 1.54479 * 110.37572 * 74.99894 * 12 11 10 15 15 C 1.54508 * 104.06642 * 217.19163 * 14 12 11 16 16 C 1.54486 * 104.05921 * 359.97438 * 15 14 12 17 17 O 1.44420 * 104.80194 * 23.97922 * 16 15 14 18 18 N 1.28643 * 110.56068 * 359.81886 * 11 10 9 19 19 N 1.46501 * 109.47306 * 119.99869 * 2 1 3 20 20 C 1.46499 * 119.99516 * 60.00408 * 19 2 1 21 21 C 1.36938 * 120.00174 * 239.99867 * 19 2 1 22 22 H 1.08004 * 119.99729 * 342.33599 * 21 19 2 23 23 C 1.38809 * 119.99846 * 162.06041 * 21 19 2 24 24 N 1.31622 * 120.00003 * 344.24150 * 23 21 19 25 25 Si 1.86800 * 119.99818 * 164.24286 * 23 21 19 26 26 H 1.48498 * 109.47331 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.46860 * 119.99799 * 25 23 21 28 28 H 1.48499 * 109.47410 * 239.99598 * 25 23 21 29 29 H 1.09008 * 109.46752 * 299.99679 * 1 2 3 30 30 H 1.08994 * 109.47325 * 59.99568 * 1 2 3 31 31 H 1.09001 * 109.47237 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47073 * 304.99251 * 4 2 1 33 33 H 1.08999 * 109.47447 * 64.99778 * 4 2 1 34 34 H 0.97008 * 119.99433 * 359.97438 * 5 4 2 35 35 H 1.07999 * 125.58366 * 0.03630 * 9 8 6 36 36 H 1.09001 * 110.50812 * 335.83837 * 14 12 11 37 37 H 1.08996 * 110.51006 * 98.40193 * 14 12 11 38 38 H 1.08991 * 110.51236 * 118.64319 * 15 14 12 39 39 H 1.09003 * 110.50823 * 241.22047 * 15 14 12 40 40 H 1.08997 * 110.37077 * 142.81566 * 16 15 14 41 41 H 1.09002 * 110.36623 * 265.03755 * 16 15 14 42 42 H 1.09004 * 109.46876 * 264.85496 * 20 19 2 43 43 H 1.08995 * 109.47496 * 24.85803 * 20 19 2 44 44 H 1.09002 * 109.46623 * 144.86108 * 20 19 2 45 45 H 0.97000 * 119.99829 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 6 4.1730 -1.4290 -2.1908 7 8 3.5680 -1.8860 -3.1419 8 6 5.6407 -1.5342 -2.1322 9 6 6.3782 -2.1300 -3.0960 10 16 8.0289 -2.0432 -2.6605 11 6 7.6389 -1.2250 -1.2133 12 6 8.6445 -0.7658 -0.1891 13 1 8.1497 -0.5532 0.7587 14 6 9.3956 0.4852 -0.6960 15 6 10.8410 0.2872 -0.1872 16 6 10.7920 -1.0598 0.5676 17 8 9.6711 -1.7651 -0.0087 18 7 6.3672 -1.0549 -1.1190 19 7 2.0184 -0.6906 1.1962 20 6 1.6645 -2.0932 1.4279 21 6 2.8057 -0.0251 2.0975 22 1 3.3007 0.8906 1.8095 23 6 2.9630 -0.5244 3.3832 24 7 2.1355 -1.4408 3.8391 25 14 4.3490 0.1044 4.4662 26 1 5.1325 1.1250 3.7248 27 1 3.7795 0.7145 5.6945 28 1 5.2364 -1.0258 4.8406 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.6054 -1.7198 -1.2952 33 1 1.7516 -0.1582 -2.1370 34 1 3.9824 -0.4621 -0.4320 35 1 5.9885 -2.5843 -3.9950 36 1 9.3764 0.5270 -1.7850 37 1 8.9599 1.3900 -0.2724 38 1 11.5364 0.2311 -1.0246 39 1 11.1223 1.0953 0.4881 40 1 11.7144 -1.6181 0.4078 41 1 10.6303 -0.8923 1.6324 42 1 0.7893 -2.1448 2.0756 43 1 1.4405 -2.5736 0.4755 44 1 2.5004 -2.6046 1.9052 45 1 2.2456 -1.7899 4.7373 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485304165.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:57 Heat of formation + Delta-G solvation = -11.360255 kcal Electronic energy + Delta-G solvation = -27646.579215 eV Core-core repulsion = 23791.929683 eV Total energy + Delta-G solvation = -3854.649532 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.47418 -39.59809 -38.35725 -36.65250 -33.75320 -32.53652 -32.00125 -31.66033 -29.29977 -28.84735 -26.68805 -25.99581 -24.86892 -23.40921 -22.83451 -21.93388 -20.96117 -19.72795 -19.28450 -18.44278 -16.90532 -16.70865 -16.45668 -16.32266 -15.55587 -15.39409 -15.26496 -14.94816 -14.33848 -14.20343 -14.04031 -13.70500 -13.52326 -13.05740 -12.71779 -12.71190 -12.29444 -12.13880 -12.03879 -11.93054 -11.87975 -11.66663 -11.43006 -11.05396 -11.04446 -10.80670 -10.72428 -10.36781 -10.25711 -10.24373 -9.88072 -9.83376 -9.75043 -9.73812 -9.68019 -8.97614 -8.53808 -8.44714 -6.81844 -5.71135 -3.13036 0.46964 1.16367 1.59856 2.02458 3.24851 3.38138 3.44852 3.46921 3.63189 3.72654 4.07357 4.25239 4.49630 4.54108 4.62417 4.83370 4.95347 5.03759 5.19174 5.30709 5.37484 5.41409 5.43071 5.44268 5.49705 5.61823 5.63774 5.68108 5.83753 5.95039 6.11599 6.20471 6.32525 6.41956 6.44991 6.77321 6.87138 6.88962 7.03959 7.40588 7.46122 7.73525 7.84044 8.09630 8.37838 8.61768 9.24004 9.88151 10.35366 11.33983 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009446 B = 0.004276 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2963.437369 B = 6547.239854 C = 8877.543867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.158 3.842 3 H 0.069 0.931 4 C 0.104 3.896 5 N -0.684 5.684 6 C 0.586 3.414 7 O -0.553 6.553 8 C 0.020 3.980 9 C -0.234 4.234 10 S 0.231 5.769 11 C 0.024 3.976 12 C 0.152 3.848 13 H 0.107 0.893 14 C -0.145 4.145 15 C -0.154 4.154 16 C 0.045 3.955 17 O -0.366 6.366 18 N -0.422 5.422 19 N -0.595 5.595 20 C 0.166 3.834 21 C -0.254 4.254 22 H 0.071 0.929 23 C 0.003 3.997 24 N -0.905 5.905 25 Si 0.900 3.100 26 H -0.278 1.278 27 H -0.292 1.292 28 H -0.290 1.290 29 H 0.059 0.941 30 H 0.042 0.958 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.420 0.580 35 H 0.190 0.810 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.067 0.933 42 H 0.027 0.973 43 H -0.003 1.003 44 H 0.044 0.956 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.269 2.399 -11.631 20.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.049 3.951 3 H 0.087 0.913 4 C -0.022 4.022 5 N -0.333 5.333 6 C 0.368 3.632 7 O -0.433 6.433 8 C -0.115 4.115 9 C -0.376 4.376 10 S 0.488 5.512 11 C -0.255 4.255 12 C 0.091 3.909 13 H 0.125 0.875 14 C -0.184 4.184 15 C -0.192 4.192 16 C -0.032 4.032 17 O -0.284 6.284 18 N -0.139 5.139 19 N -0.317 5.317 20 C 0.022 3.978 21 C -0.383 4.383 22 H 0.088 0.912 23 C -0.196 4.196 24 N -0.550 5.550 25 Si 0.730 3.270 26 H -0.203 1.203 27 H -0.220 1.220 28 H -0.217 1.217 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.258 0.742 35 H 0.207 0.793 36 H 0.097 0.903 37 H 0.109 0.891 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.115 0.885 41 H 0.085 0.915 42 H 0.045 0.955 43 H 0.016 0.984 44 H 0.062 0.938 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 16.500 1.718 -12.118 20.543 hybrid contribution -0.186 0.597 1.203 1.356 sum 16.314 2.315 -10.915 19.765 Atomic orbital electron populations 1.22189 0.97377 1.01423 1.00605 1.20597 0.92629 0.95540 0.86313 0.91326 1.22045 0.79190 1.01490 0.99436 1.45774 1.08297 1.56512 1.22742 1.17045 0.84165 0.78859 0.83114 1.90764 1.68519 1.49814 1.34205 1.20510 0.96340 1.03013 0.91680 1.26701 0.98275 1.06545 1.06054 1.82752 1.03674 1.50269 1.14518 1.26571 0.94195 1.04502 1.00244 1.21269 0.86805 0.87055 0.95816 0.87500 1.23024 0.94917 0.98129 1.02371 1.22957 0.96824 0.98338 1.01068 1.23464 0.89951 0.92317 0.97485 1.89158 1.24415 1.31453 1.83393 1.66856 1.03599 1.18475 1.24926 1.44031 1.58213 1.08223 1.21283 1.20729 0.99807 0.83321 0.93948 1.19256 1.20340 1.07462 0.91247 0.91153 1.24884 0.98716 0.99500 0.96469 1.70124 1.35977 1.32315 1.16606 0.86249 0.82222 0.78018 0.80477 1.20280 1.21969 1.21706 0.92180 0.93905 0.93113 0.91864 0.92233 0.74163 0.79324 0.90309 0.89137 0.90304 0.89948 0.88516 0.91519 0.95476 0.98430 0.93766 0.93904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 9.19 37.16 0.34 -2.46 16 2 C 0.16 3.14 2.87 -67.93 -0.19 2.95 16 3 H 0.07 1.35 7.83 -51.93 -0.41 0.94 16 4 C 0.10 1.95 4.93 -4.04 -0.02 1.93 16 5 N -0.68 -13.25 5.38 -61.43 -0.33 -13.58 16 6 C 0.59 11.22 7.80 -12.59 -0.10 11.12 16 7 O -0.55 -11.50 16.71 5.25 0.09 -11.42 16 8 C 0.02 0.34 6.70 -84.52 -0.57 -0.23 16 9 C -0.23 -3.20 10.62 29.65 0.31 -2.89 16 10 S 0.23 2.59 22.69 -107.50 -2.44 0.15 16 11 C 0.02 0.34 6.26 -13.61 -0.09 0.25 16 12 C 0.15 1.80 3.81 -27.11 -0.10 1.70 16 13 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 14 C -0.15 -1.27 6.62 -25.16 -0.17 -1.43 16 15 C -0.15 -1.02 7.09 -25.16 -0.18 -1.20 16 16 C 0.04 0.35 7.63 37.94 0.29 0.64 16 17 O -0.37 -4.25 11.13 -35.23 -0.39 -4.64 16 18 N -0.42 -7.06 10.12 -8.51 -0.09 -7.15 16 19 N -0.59 -14.35 2.29 -173.48 -0.40 -14.74 16 20 C 0.17 4.14 8.00 59.85 0.48 4.62 16 21 C -0.25 -6.70 9.37 -15.06 -0.14 -6.84 16 22 H 0.07 1.81 7.79 -52.48 -0.41 1.40 16 23 C 0.00 0.07 5.06 -17.43 -0.09 -0.02 16 24 N -0.90 -26.22 10.57 55.49 0.59 -25.63 16 25 Si 0.90 21.62 29.58 -169.99 -5.03 16.59 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 H 0.06 1.16 8.14 -51.92 -0.42 0.73 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.92 7.67 -51.93 -0.40 0.52 16 32 H 0.06 1.25 6.86 -51.93 -0.36 0.89 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.42 8.61 7.41 -40.82 -0.30 8.30 16 35 H 0.19 2.29 8.03 -52.49 -0.42 1.87 16 36 H 0.08 0.65 7.86 -51.93 -0.41 0.24 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.03 0.73 7.46 -51.93 -0.39 0.34 16 43 H 0.00 -0.06 6.53 -51.93 -0.34 -0.40 16 44 H 0.04 1.21 7.07 -51.93 -0.37 0.84 16 45 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 381.89 15.07 5.76 5.76 Total: -1.00 -31.94 381.89 -9.20 -41.14 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -6.74 Total: 5.38 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: -0.22 Total: 8.15 kcal Atomic # 7 Polarization: -60.88 SS G_CDS: -0.23 Total: -61.11 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.30 Total: -16.06 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Atomic # 16 Polarization: 2.59 SS G_CDS: -2.44 Total: 0.15 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.94 -9.20 -41.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485304165.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.777 kcal (2) G-P(sol) polarization free energy of solvation -31.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds