Wall clock time and date at job start Sat Apr 11 2020 05:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46892 * 2 1 4 4 C 1.52999 * 109.46990 * 240.00521 * 2 1 3 5 5 N 1.46503 * 109.47267 * 184.99903 * 4 2 1 6 6 C 1.34771 * 120.00494 * 179.97438 * 5 4 2 7 7 O 1.21632 * 119.99652 * 359.97438 * 6 5 4 8 8 C 1.47269 * 120.00390 * 179.97438 * 6 5 4 9 9 C 1.35204 * 123.14306 * 179.70059 * 8 6 5 10 10 S 1.70936 * 108.82769 * 179.90439 * 9 8 6 11 11 C 1.70771 * 91.12853 * 0.30777 * 10 9 8 12 12 C 1.50700 * 124.71864 * 179.82182 * 11 10 9 13 13 H 1.09002 * 110.33053 * 197.24837 * 12 11 10 14 14 C 1.54479 * 110.37572 * 74.99894 * 12 11 10 15 15 C 1.54508 * 104.06642 * 217.19163 * 14 12 11 16 16 C 1.54486 * 104.05921 * 359.97438 * 15 14 12 17 17 O 1.44420 * 104.80194 * 23.97922 * 16 15 14 18 18 N 1.28643 * 110.56068 * 359.81886 * 11 10 9 19 19 N 1.46501 * 109.47306 * 119.99869 * 2 1 3 20 20 C 1.46499 * 119.99516 * 60.00408 * 19 2 1 21 21 C 1.36938 * 120.00174 * 239.99867 * 19 2 1 22 22 H 1.08004 * 119.99729 * 342.33599 * 21 19 2 23 23 C 1.38809 * 119.99846 * 162.06041 * 21 19 2 24 24 N 1.31622 * 120.00003 * 344.24150 * 23 21 19 25 25 Si 1.86800 * 119.99818 * 164.24286 * 23 21 19 26 26 H 1.48498 * 109.47331 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.46860 * 119.99799 * 25 23 21 28 28 H 1.48499 * 109.47410 * 239.99598 * 25 23 21 29 29 H 1.09008 * 109.46752 * 299.99679 * 1 2 3 30 30 H 1.08994 * 109.47325 * 59.99568 * 1 2 3 31 31 H 1.09001 * 109.47237 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47073 * 304.99251 * 4 2 1 33 33 H 1.08999 * 109.47447 * 64.99778 * 4 2 1 34 34 H 0.97008 * 119.99433 * 359.97438 * 5 4 2 35 35 H 1.07999 * 125.58366 * 0.03630 * 9 8 6 36 36 H 1.09001 * 110.50812 * 335.83837 * 14 12 11 37 37 H 1.08996 * 110.51006 * 98.40193 * 14 12 11 38 38 H 1.08991 * 110.51236 * 118.64319 * 15 14 12 39 39 H 1.09003 * 110.50823 * 241.22047 * 15 14 12 40 40 H 1.08997 * 110.37077 * 142.81566 * 16 15 14 41 41 H 1.09002 * 110.36623 * 265.03755 * 16 15 14 42 42 H 1.09004 * 109.46876 * 264.85496 * 20 19 2 43 43 H 1.08995 * 109.47496 * 24.85803 * 20 19 2 44 44 H 1.09002 * 109.46623 * 144.86108 * 20 19 2 45 45 H 0.97000 * 119.99829 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 6 4.1730 -1.4290 -2.1908 7 8 3.5680 -1.8860 -3.1419 8 6 5.6407 -1.5342 -2.1322 9 6 6.3782 -2.1300 -3.0960 10 16 8.0289 -2.0432 -2.6605 11 6 7.6389 -1.2250 -1.2133 12 6 8.6445 -0.7658 -0.1891 13 1 8.1497 -0.5532 0.7587 14 6 9.3956 0.4852 -0.6960 15 6 10.8410 0.2872 -0.1872 16 6 10.7920 -1.0598 0.5676 17 8 9.6711 -1.7651 -0.0087 18 7 6.3672 -1.0549 -1.1190 19 7 2.0184 -0.6906 1.1962 20 6 1.6645 -2.0932 1.4279 21 6 2.8057 -0.0251 2.0975 22 1 3.3007 0.8906 1.8095 23 6 2.9630 -0.5244 3.3832 24 7 2.1355 -1.4408 3.8391 25 14 4.3490 0.1044 4.4662 26 1 5.1325 1.1250 3.7248 27 1 3.7795 0.7145 5.6945 28 1 5.2364 -1.0258 4.8406 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.6054 -1.7198 -1.2952 33 1 1.7516 -0.1582 -2.1370 34 1 3.9824 -0.4621 -0.4320 35 1 5.9885 -2.5843 -3.9950 36 1 9.3764 0.5270 -1.7850 37 1 8.9599 1.3900 -0.2724 38 1 11.5364 0.2311 -1.0246 39 1 11.1223 1.0953 0.4881 40 1 11.7144 -1.6181 0.4078 41 1 10.6303 -0.8923 1.6324 42 1 0.7893 -2.1448 2.0756 43 1 1.4405 -2.5736 0.4755 44 1 2.5004 -2.6046 1.9052 45 1 2.2456 -1.7899 4.7373 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485304165.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:56 Heat of formation + Delta-G solvation = -33.108641 kcal Electronic energy + Delta-G solvation = -27647.522296 eV Core-core repulsion = 23791.929683 eV Total energy + Delta-G solvation = -3855.592613 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.64595 -40.53840 -39.63819 -38.37929 -35.48235 -33.76787 -33.29254 -32.59255 -31.16527 -29.76292 -28.07114 -28.02447 -25.98625 -24.99253 -24.18516 -22.72910 -21.91537 -21.15925 -20.74448 -19.69245 -18.87701 -17.75085 -17.52273 -17.20715 -17.19205 -16.67393 -16.51672 -16.20425 -15.87197 -15.56585 -15.17133 -14.85366 -14.69559 -14.57885 -14.45072 -13.96060 -13.88661 -13.56812 -13.10812 -13.02823 -12.89500 -12.77071 -12.75608 -12.67009 -12.55584 -12.30625 -12.26848 -12.08336 -11.78496 -11.65028 -11.54299 -11.28600 -11.04508 -10.84233 -10.71169 -10.62250 -10.17207 -9.82868 -8.84700 -7.80371 -5.23010 -0.60306 0.17207 0.54292 0.79535 1.45159 1.47454 1.56842 2.15977 2.31744 2.48049 2.52819 3.23795 3.34741 3.50757 3.61335 3.67490 3.92694 4.00004 4.03148 4.09108 4.18150 4.32116 4.33471 4.38339 4.55463 4.63501 4.69558 4.72917 4.74150 4.84383 4.90393 4.93941 5.02091 5.03631 5.14591 5.21018 5.33076 5.39752 5.52302 5.65039 5.69542 5.72692 6.27006 6.32111 6.62248 7.11262 7.16806 7.88265 8.31682 9.24048 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009446 B = 0.004276 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2963.437369 B = 6547.239854 C = 8877.543867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.156 3.844 3 H 0.073 0.927 4 C 0.113 3.887 5 N -0.690 5.690 6 C 0.584 3.416 7 O -0.576 6.576 8 C -0.014 4.014 9 C -0.234 4.234 10 S 0.327 5.673 11 C 0.003 3.997 12 C 0.147 3.853 13 H 0.086 0.914 14 C -0.142 4.142 15 C -0.145 4.145 16 C 0.035 3.965 17 O -0.386 6.386 18 N -0.458 5.458 19 N -0.604 5.604 20 C 0.188 3.812 21 C -0.249 4.249 22 H 0.078 0.922 23 C -0.054 4.054 24 N -0.939 5.939 25 Si 0.959 3.041 26 H -0.261 1.261 27 H -0.296 1.296 28 H -0.299 1.299 29 H 0.043 0.957 30 H 0.080 0.920 31 H 0.045 0.955 32 H 0.051 0.949 33 H 0.081 0.919 34 H 0.414 0.586 35 H 0.203 0.797 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.117 0.883 41 H 0.066 0.934 42 H 0.003 0.997 43 H 0.017 0.983 44 H 0.011 0.989 45 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.599 3.361 -13.366 23.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.049 3.951 3 H 0.091 0.909 4 C -0.013 4.013 5 N -0.338 5.338 6 C 0.368 3.632 7 O -0.458 6.458 8 C -0.150 4.150 9 C -0.377 4.377 10 S 0.585 5.415 11 C -0.276 4.276 12 C 0.086 3.914 13 H 0.104 0.896 14 C -0.181 4.181 15 C -0.182 4.182 16 C -0.040 4.040 17 O -0.305 6.305 18 N -0.175 5.175 19 N -0.328 5.328 20 C 0.043 3.957 21 C -0.379 4.379 22 H 0.095 0.905 23 C -0.249 4.249 24 N -0.587 5.587 25 Si 0.788 3.212 26 H -0.185 1.185 27 H -0.223 1.223 28 H -0.226 1.226 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.251 0.749 35 H 0.220 0.780 36 H 0.103 0.897 37 H 0.110 0.890 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.135 0.865 41 H 0.084 0.916 42 H 0.021 0.979 43 H 0.036 0.964 44 H 0.030 0.970 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 18.848 2.714 -13.884 23.566 hybrid contribution -0.813 0.270 1.640 1.850 sum 18.034 2.983 -12.244 22.001 Atomic orbital electron populations 1.22063 0.95512 1.01436 1.01640 1.20791 0.93957 0.95420 0.84910 0.90855 1.21934 0.79065 1.00876 0.99387 1.45829 1.08449 1.56838 1.22732 1.17378 0.85354 0.78001 0.82455 1.90730 1.69408 1.50780 1.34858 1.20266 0.95373 1.05899 0.93424 1.27040 1.00101 1.04892 1.05662 1.82374 1.00456 1.47329 1.11310 1.26977 0.93864 1.04670 1.02104 1.21297 0.86903 0.88504 0.94732 0.89604 1.23040 0.95846 0.96542 1.02720 1.22959 0.95596 0.97936 1.01751 1.23732 0.89517 0.93214 0.97582 1.89122 1.25248 1.32344 1.83764 1.66809 1.04991 1.19940 1.25718 1.44168 1.58421 1.08076 1.22095 1.20348 0.97321 0.84024 0.93985 1.19579 1.19823 1.07163 0.91344 0.90474 1.25594 1.00888 1.00368 0.98013 1.70279 1.37703 1.34102 1.16609 0.85306 0.79672 0.77447 0.78742 1.18510 1.22309 1.22604 0.93764 0.90167 0.93631 0.93020 0.90104 0.74898 0.77954 0.89696 0.88978 0.88578 0.88439 0.86455 0.91571 0.97888 0.96422 0.97008 0.94652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.09 9.19 71.98 0.66 -4.43 16 2 C 0.16 6.11 2.87 44.99 0.13 6.24 16 3 H 0.07 2.80 7.83 -2.38 -0.02 2.78 16 4 C 0.11 4.13 4.93 86.38 0.43 4.56 16 5 N -0.69 -26.84 5.38 -466.51 -2.51 -29.35 16 6 C 0.58 22.44 7.80 86.62 0.68 23.11 16 7 O -0.58 -23.84 16.71 -4.13 -0.07 -23.91 16 8 C -0.01 -0.47 6.70 40.56 0.27 -0.20 16 9 C -0.23 -6.08 10.62 67.12 0.71 -5.37 16 10 S 0.33 6.57 22.69 -56.49 -1.28 5.28 16 11 C 0.00 0.07 6.26 88.58 0.55 0.62 16 12 C 0.15 3.37 3.81 30.35 0.12 3.49 16 13 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 14 C -0.14 -2.21 6.62 31.61 0.21 -2.00 16 15 C -0.14 -1.50 7.09 31.61 0.22 -1.27 16 16 C 0.04 0.48 7.63 72.49 0.55 1.04 16 17 O -0.39 -8.41 11.13 -148.98 -1.66 -10.07 16 18 N -0.46 -15.34 10.12 -180.83 -1.83 -17.17 16 19 N -0.60 -29.47 2.29 -702.77 -1.61 -31.08 16 20 C 0.19 9.63 8.00 127.77 1.02 10.66 16 21 C -0.25 -13.26 9.37 84.03 0.79 -12.48 16 22 H 0.08 3.94 7.79 -2.91 -0.02 3.92 16 23 C -0.05 -3.02 5.06 84.86 0.43 -2.59 16 24 N -0.94 -56.13 10.57 21.65 0.23 -55.90 16 25 Si 0.96 45.23 29.58 68.60 2.03 47.26 16 26 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 27 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 28 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 29 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 30 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.04 1.61 7.67 -2.39 -0.02 1.59 16 32 H 0.05 2.02 6.86 -2.39 -0.02 2.00 16 33 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 34 H 0.41 17.21 7.41 -92.70 -0.69 16.52 16 35 H 0.20 4.54 8.03 -2.91 -0.02 4.52 16 36 H 0.08 1.19 7.86 -2.39 -0.02 1.18 16 37 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.00 0.16 7.46 -2.38 -0.02 0.14 16 43 H 0.02 0.81 6.53 -2.39 -0.02 0.79 16 44 H 0.01 0.64 7.07 -2.39 -0.02 0.62 16 45 H 0.24 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -70.66 381.89 0.39 -70.27 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: 0.32 Total: 23.28 kcal Atomic # 6 Polarization: 14.61 SS G_CDS: 6.77 Total: 21.38 kcal Atomic # 7 Polarization: -127.78 SS G_CDS: -5.72 Total: -133.50 kcal Atomic # 8 Polarization: -32.25 SS G_CDS: -1.73 Total: -33.98 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Atomic # 16 Polarization: 6.57 SS G_CDS: -1.28 Total: 5.28 kcal Total: -70.66 0.39 -70.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485304165.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.164 kcal (2) G-P(sol) polarization free energy of solvation -70.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds