Wall clock time and date at job start Sat Apr 11 2020 05:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47056 * 2 1 4 4 C 1.53005 * 109.46808 * 240.00011 * 2 1 3 5 5 N 1.46496 * 109.46784 * 185.00077 * 4 2 1 6 6 C 1.34775 * 120.00066 * 179.97438 * 5 4 2 7 7 O 1.21639 * 119.99846 * 359.97438 * 6 5 4 8 8 C 1.47266 * 120.00503 * 179.97438 * 6 5 4 9 9 C 1.35203 * 123.14381 * 180.02562 * 8 6 5 10 10 S 1.70948 * 108.82792 * 179.73615 * 9 8 6 11 11 C 1.70769 * 91.12701 * 0.33327 * 10 9 8 12 12 C 1.50704 * 124.71981 * 179.91674 * 11 10 9 13 13 H 1.09001 * 109.86412 * 163.99802 * 12 11 10 14 14 C 1.54095 * 109.87934 * 285.00631 * 12 11 10 15 15 C 1.54814 * 104.18731 * 121.60566 * 14 12 11 16 16 C 1.54998 * 102.09064 * 20.87866 * 15 14 12 17 17 O 1.43742 * 110.00242 * 42.91386 * 12 11 10 18 18 N 1.28655 * 110.56050 * 359.65677 * 11 10 9 19 19 N 1.46494 * 109.47189 * 120.00232 * 2 1 3 20 20 C 1.46495 * 120.00575 * 59.99657 * 19 2 1 21 21 C 1.36947 * 119.99654 * 239.99866 * 19 2 1 22 22 H 1.08001 * 119.99689 * 20.36073 * 21 19 2 23 23 C 1.38814 * 119.99861 * 200.36062 * 21 19 2 24 24 N 1.31620 * 119.99847 * 14.99627 * 23 21 19 25 25 Si 1.86797 * 119.99708 * 194.99546 * 23 21 19 26 26 H 1.48504 * 109.47168 * 85.00847 * 25 23 21 27 27 H 1.48506 * 109.46714 * 205.00254 * 25 23 21 28 28 H 1.48496 * 109.47253 * 325.00248 * 25 23 21 29 29 H 1.09001 * 109.46911 * 59.99968 * 1 2 3 30 30 H 1.08998 * 109.46679 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46870 * 299.99904 * 1 2 3 32 32 H 1.08995 * 109.47251 * 65.00023 * 4 2 1 33 33 H 1.08996 * 109.47196 * 304.99822 * 4 2 1 34 34 H 0.97004 * 120.00596 * 359.97438 * 5 4 2 35 35 H 1.07998 * 125.58949 * 359.97438 * 9 8 6 36 36 H 1.09008 * 110.48726 * 240.27721 * 14 12 11 37 37 H 1.09000 * 110.48760 * 2.92424 * 14 12 11 38 38 H 1.09002 * 110.90401 * 139.07879 * 15 14 12 39 39 H 1.09002 * 110.90062 * 262.64518 * 15 14 12 40 40 H 1.08995 * 110.61596 * 81.48051 * 16 15 14 41 41 H 1.09001 * 110.61516 * 204.47749 * 16 15 14 42 42 H 1.08999 * 109.47441 * 95.11729 * 20 19 2 43 43 H 1.09000 * 109.47339 * 215.12100 * 20 19 2 44 44 H 1.08998 * 109.46810 * 335.11843 * 20 19 2 45 45 H 0.97003 * 120.00006 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5000 -0.8264 -1.1906 6 6 4.1730 -1.4292 -2.1907 7 8 3.5680 -1.8864 -3.1418 8 6 5.6407 -1.5345 -2.1321 9 6 6.3787 -2.1248 -3.0990 10 16 8.0297 -2.0360 -2.6645 11 6 7.6389 -1.2250 -1.2134 12 6 8.6445 -0.7662 -0.1890 13 1 8.1837 -0.0436 0.4846 14 6 9.1630 -1.9747 0.6143 15 6 10.6935 -1.9564 0.3817 16 6 10.9391 -0.4876 -0.0480 17 8 9.7770 -0.1708 -0.8440 18 7 6.3671 -1.0555 -1.1188 19 7 2.0184 -0.6906 1.1961 20 6 1.6645 -2.0931 1.4280 21 6 2.8057 -0.0251 2.0975 22 1 2.8040 1.0547 2.1221 23 6 3.6060 -0.7382 2.9795 24 7 3.8413 -2.0159 2.7686 25 14 4.3490 0.1156 4.4655 26 1 3.3669 0.1146 5.5794 27 1 5.5769 -0.6051 4.8877 28 1 4.6940 1.5157 4.1109 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.7516 -0.1584 -2.1370 33 1 1.6054 -1.7198 -1.2952 34 1 3.9825 -0.4622 -0.4320 35 1 5.9894 -2.5750 -4.0001 36 1 8.9367 -1.8541 1.6737 37 1 8.7302 -2.8998 0.2336 38 1 11.2295 -2.1873 1.3024 39 1 10.9743 -2.6471 -0.4134 40 1 10.9957 0.1632 0.8246 41 1 11.8470 -0.4094 -0.6460 42 1 2.4605 -2.7358 1.0518 43 1 1.5348 -2.2632 2.4968 44 1 0.7348 -2.3240 0.9080 45 1 4.4008 -2.5142 3.3847 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485304166.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:00 Heat of formation + Delta-G solvation = -11.550347 kcal Electronic energy + Delta-G solvation = -27951.535274 eV Core-core repulsion = 24096.877499 eV Total energy + Delta-G solvation = -3854.657775 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.32349 -39.48391 -38.19793 -36.60211 -33.62675 -32.43942 -31.98118 -31.51716 -29.28596 -28.71083 -26.58899 -25.98619 -24.70292 -23.28678 -22.73703 -21.98396 -20.77083 -19.56039 -19.21703 -18.30772 -16.88628 -16.66459 -16.34121 -16.20043 -15.33703 -15.28700 -15.13630 -14.87602 -14.27651 -14.01799 -13.85361 -13.59114 -13.42847 -13.05385 -12.77076 -12.59794 -12.17344 -12.07489 -11.97084 -11.85288 -11.72490 -11.56052 -11.48994 -11.06631 -10.98288 -10.78072 -10.68226 -10.38281 -10.26886 -10.15363 -9.81413 -9.75855 -9.67952 -9.57337 -9.50858 -8.81088 -8.54069 -8.28515 -6.78994 -5.70729 -3.15295 0.63392 1.32400 1.75057 2.21941 3.37367 3.41343 3.43809 3.44660 3.74501 3.93601 4.18741 4.36298 4.49080 4.67949 4.71553 4.97012 5.04664 5.23536 5.33395 5.41565 5.42804 5.44347 5.48284 5.59373 5.63716 5.64481 5.80158 5.85755 5.97145 6.03502 6.12069 6.17951 6.37488 6.41795 6.58692 6.72094 6.82769 6.92753 7.13964 7.42006 7.60376 7.75971 7.83079 8.29010 8.38412 8.80116 9.23838 9.87652 10.36243 11.32826 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009768 B = 0.004565 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2865.724497 B = 6132.265601 C = 8391.006994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.158 3.842 3 H 0.069 0.931 4 C 0.105 3.895 5 N -0.678 5.678 6 C 0.586 3.414 7 O -0.559 6.559 8 C 0.024 3.976 9 C -0.235 4.235 10 S 0.216 5.784 11 C 0.025 3.975 12 C 0.156 3.844 13 H 0.106 0.894 14 C -0.147 4.147 15 C -0.156 4.156 16 C 0.046 3.954 17 O -0.368 6.368 18 N -0.415 5.415 19 N -0.593 5.593 20 C 0.164 3.836 21 C -0.260 4.260 22 H 0.068 0.932 23 C 0.008 3.992 24 N -0.897 5.897 25 Si 0.899 3.101 26 H -0.290 1.290 27 H -0.293 1.293 28 H -0.280 1.280 29 H 0.045 0.955 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.425 0.575 35 H 0.188 0.812 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.097 0.903 42 H 0.028 0.972 43 H 0.041 0.959 44 H -0.001 1.001 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.367 0.003 -7.620 14.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.049 3.951 3 H 0.087 0.913 4 C -0.021 4.021 5 N -0.327 5.327 6 C 0.369 3.631 7 O -0.440 6.440 8 C -0.111 4.111 9 C -0.377 4.377 10 S 0.473 5.527 11 C -0.255 4.255 12 C 0.095 3.905 13 H 0.124 0.876 14 C -0.186 4.186 15 C -0.193 4.193 16 C -0.031 4.031 17 O -0.287 6.287 18 N -0.131 5.131 19 N -0.316 5.316 20 C 0.020 3.980 21 C -0.389 4.389 22 H 0.086 0.914 23 C -0.191 4.191 24 N -0.542 5.542 25 Si 0.730 3.270 26 H -0.217 1.217 27 H -0.219 1.219 28 H -0.206 1.206 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.264 0.736 35 H 0.205 0.795 36 H 0.110 0.890 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.115 0.885 42 H 0.047 0.953 43 H 0.060 0.940 44 H 0.017 0.983 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 12.707 -0.336 -8.312 15.188 hybrid contribution -0.404 0.352 1.445 1.541 sum 12.304 0.015 -6.866 14.090 Atomic orbital electron populations 1.22169 0.97411 1.01449 1.00665 1.20643 0.92635 0.95935 0.85893 0.91318 1.22031 0.79716 1.01153 0.99213 1.45728 1.08066 1.56194 1.22763 1.17039 0.84221 0.78806 0.83074 1.90745 1.68601 1.50174 1.34437 1.20512 0.96381 1.02954 0.91293 1.26642 0.98023 1.07046 1.06036 1.82639 1.03914 1.50660 1.15519 1.26833 0.94396 1.03948 1.00363 1.21037 0.84820 0.95416 0.89265 0.87610 1.23033 0.95275 0.98340 1.01912 1.23181 0.95766 0.97618 1.02776 1.23621 0.89106 0.94655 0.95684 1.88910 1.15642 1.75060 1.49060 1.66877 1.03675 1.17795 1.24764 1.43959 1.57745 1.09657 1.20281 1.20740 0.94048 0.84486 0.98763 1.19184 1.17921 0.90732 1.11068 0.91434 1.24899 0.97950 0.96083 1.00134 1.70109 1.39915 1.07620 1.36540 0.86358 0.78293 0.78795 0.83572 1.21684 1.21925 1.20605 0.93552 0.92951 0.92383 0.92665 0.92207 0.73638 0.79499 0.89014 0.89895 0.89656 0.90259 0.91526 0.88525 0.95325 0.94036 0.98298 0.93933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 9.18 37.16 0.34 -2.33 16 2 C 0.16 3.14 2.87 -67.93 -0.19 2.94 16 3 H 0.07 1.36 7.85 -51.93 -0.41 0.96 16 4 C 0.11 2.07 4.97 -4.04 -0.02 2.05 16 5 N -0.68 -14.38 5.38 -61.43 -0.33 -14.71 16 6 C 0.59 12.31 7.80 -12.59 -0.10 12.21 16 7 O -0.56 -12.47 16.71 5.24 0.09 -12.38 16 8 C 0.02 0.46 6.70 -84.53 -0.57 -0.11 16 9 C -0.24 -3.61 10.62 29.65 0.31 -3.30 16 10 S 0.22 2.73 22.72 -107.50 -2.44 0.29 16 11 C 0.02 0.38 6.11 -13.61 -0.08 0.30 16 12 C 0.16 2.10 3.94 -27.31 -0.11 1.99 16 13 H 0.11 1.54 8.14 -51.93 -0.42 1.12 16 14 C -0.15 -1.65 6.63 -25.20 -0.17 -1.81 16 15 C -0.16 -1.26 7.15 -24.72 -0.18 -1.44 16 16 C 0.05 0.39 7.72 38.21 0.29 0.69 16 17 O -0.37 -4.54 11.00 -35.23 -0.39 -4.92 16 18 N -0.42 -7.83 10.12 -8.51 -0.09 -7.92 16 19 N -0.59 -14.15 2.29 -173.49 -0.40 -14.54 16 20 C 0.16 4.00 8.11 59.84 0.49 4.49 16 21 C -0.26 -6.77 9.34 -15.05 -0.14 -6.91 16 22 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 23 C 0.01 0.22 5.06 -17.43 -0.09 0.14 16 24 N -0.90 -25.09 10.67 55.49 0.59 -24.50 16 25 Si 0.90 21.26 29.58 -169.99 -5.03 16.24 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 28 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.89 6.66 -51.93 -0.35 0.55 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 1.24 7.84 -51.93 -0.41 0.83 16 34 H 0.42 9.76 7.41 -40.82 -0.30 9.46 16 35 H 0.19 2.55 8.03 -52.49 -0.42 2.13 16 36 H 0.09 1.03 8.14 -51.92 -0.42 0.61 16 37 H 0.08 0.98 7.69 -51.93 -0.40 0.58 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.03 0.77 7.40 -51.93 -0.38 0.39 16 43 H 0.04 1.09 7.21 -51.93 -0.37 0.71 16 44 H 0.00 -0.03 6.44 -51.93 -0.33 -0.37 16 45 H 0.25 6.89 8.31 -40.82 -0.34 6.56 16 LS Contribution 381.93 15.07 5.76 5.76 Total: -1.00 -31.01 381.93 -9.17 -40.18 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -6.73 Total: 7.62 kcal Atomic # 6 Polarization: 9.11 SS G_CDS: -0.21 Total: 8.90 kcal Atomic # 7 Polarization: -61.45 SS G_CDS: -0.22 Total: -61.68 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -0.30 Total: -17.31 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.24 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -2.44 Total: 0.29 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.01 -9.17 -40.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485304166.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.633 kcal (2) G-P(sol) polarization free energy of solvation -31.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds