Wall clock time and date at job start Sat Apr 11 2020 05:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47056 * 2 1 4 4 C 1.53005 * 109.46808 * 240.00011 * 2 1 3 5 5 N 1.46496 * 109.46784 * 185.00077 * 4 2 1 6 6 C 1.34775 * 120.00066 * 179.97438 * 5 4 2 7 7 O 1.21639 * 119.99846 * 359.97438 * 6 5 4 8 8 C 1.47266 * 120.00503 * 179.97438 * 6 5 4 9 9 C 1.35203 * 123.14381 * 180.02562 * 8 6 5 10 10 S 1.70948 * 108.82792 * 179.73615 * 9 8 6 11 11 C 1.70769 * 91.12701 * 0.33327 * 10 9 8 12 12 C 1.50704 * 124.71981 * 179.91674 * 11 10 9 13 13 H 1.09001 * 109.86412 * 163.99802 * 12 11 10 14 14 C 1.54095 * 109.87934 * 285.00631 * 12 11 10 15 15 C 1.54814 * 104.18731 * 121.60566 * 14 12 11 16 16 C 1.54998 * 102.09064 * 20.87866 * 15 14 12 17 17 O 1.43742 * 110.00242 * 42.91386 * 12 11 10 18 18 N 1.28655 * 110.56050 * 359.65677 * 11 10 9 19 19 N 1.46494 * 109.47189 * 120.00232 * 2 1 3 20 20 C 1.46495 * 120.00575 * 59.99657 * 19 2 1 21 21 C 1.36947 * 119.99654 * 239.99866 * 19 2 1 22 22 H 1.08001 * 119.99689 * 20.36073 * 21 19 2 23 23 C 1.38814 * 119.99861 * 200.36062 * 21 19 2 24 24 N 1.31620 * 119.99847 * 14.99627 * 23 21 19 25 25 Si 1.86797 * 119.99708 * 194.99546 * 23 21 19 26 26 H 1.48504 * 109.47168 * 85.00847 * 25 23 21 27 27 H 1.48506 * 109.46714 * 205.00254 * 25 23 21 28 28 H 1.48496 * 109.47253 * 325.00248 * 25 23 21 29 29 H 1.09001 * 109.46911 * 59.99968 * 1 2 3 30 30 H 1.08998 * 109.46679 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46870 * 299.99904 * 1 2 3 32 32 H 1.08995 * 109.47251 * 65.00023 * 4 2 1 33 33 H 1.08996 * 109.47196 * 304.99822 * 4 2 1 34 34 H 0.97004 * 120.00596 * 359.97438 * 5 4 2 35 35 H 1.07998 * 125.58949 * 359.97438 * 9 8 6 36 36 H 1.09008 * 110.48726 * 240.27721 * 14 12 11 37 37 H 1.09000 * 110.48760 * 2.92424 * 14 12 11 38 38 H 1.09002 * 110.90401 * 139.07879 * 15 14 12 39 39 H 1.09002 * 110.90062 * 262.64518 * 15 14 12 40 40 H 1.08995 * 110.61596 * 81.48051 * 16 15 14 41 41 H 1.09001 * 110.61516 * 204.47749 * 16 15 14 42 42 H 1.08999 * 109.47441 * 95.11729 * 20 19 2 43 43 H 1.09000 * 109.47339 * 215.12100 * 20 19 2 44 44 H 1.08998 * 109.46810 * 335.11843 * 20 19 2 45 45 H 0.97003 * 120.00006 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5000 -0.8264 -1.1906 6 6 4.1730 -1.4292 -2.1907 7 8 3.5680 -1.8864 -3.1418 8 6 5.6407 -1.5345 -2.1321 9 6 6.3787 -2.1248 -3.0990 10 16 8.0297 -2.0360 -2.6645 11 6 7.6389 -1.2250 -1.2134 12 6 8.6445 -0.7662 -0.1890 13 1 8.1837 -0.0436 0.4846 14 6 9.1630 -1.9747 0.6143 15 6 10.6935 -1.9564 0.3817 16 6 10.9391 -0.4876 -0.0480 17 8 9.7770 -0.1708 -0.8440 18 7 6.3671 -1.0555 -1.1188 19 7 2.0184 -0.6906 1.1961 20 6 1.6645 -2.0931 1.4280 21 6 2.8057 -0.0251 2.0975 22 1 2.8040 1.0547 2.1221 23 6 3.6060 -0.7382 2.9795 24 7 3.8413 -2.0159 2.7686 25 14 4.3490 0.1156 4.4655 26 1 3.3669 0.1146 5.5794 27 1 5.5769 -0.6051 4.8877 28 1 4.6940 1.5157 4.1109 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.7516 -0.1584 -2.1370 33 1 1.6054 -1.7198 -1.2952 34 1 3.9825 -0.4622 -0.4320 35 1 5.9894 -2.5750 -4.0001 36 1 8.9367 -1.8541 1.6737 37 1 8.7302 -2.8998 0.2336 38 1 11.2295 -2.1873 1.3024 39 1 10.9743 -2.6471 -0.4134 40 1 10.9957 0.1632 0.8246 41 1 11.8470 -0.4094 -0.6460 42 1 2.4605 -2.7358 1.0518 43 1 1.5348 -2.2632 2.4968 44 1 0.7348 -2.3240 0.9080 45 1 4.4008 -2.5142 3.3847 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485304166.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:00 Heat of formation + Delta-G solvation = -32.513401 kcal Electronic energy + Delta-G solvation = -27952.444300 eV Core-core repulsion = 24096.877499 eV Total energy + Delta-G solvation = -3855.566801 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.62249 -40.55416 -39.60491 -38.34313 -35.41168 -33.77655 -33.33586 -32.55866 -31.11664 -29.76672 -28.03331 -27.97582 -25.94007 -24.94377 -24.07201 -22.88362 -21.90362 -21.12234 -20.71145 -19.65550 -18.83793 -17.76130 -17.60255 -17.21506 -17.09126 -16.64018 -16.51042 -16.21016 -15.86845 -15.46247 -15.12427 -14.75439 -14.65832 -14.60913 -14.35359 -14.07088 -13.84445 -13.62003 -13.22450 -13.03300 -12.85127 -12.81402 -12.68003 -12.60455 -12.51151 -12.28792 -12.19133 -12.10197 -11.77180 -11.73079 -11.50050 -11.28709 -11.03452 -10.78139 -10.68240 -10.58274 -10.14025 -9.79016 -8.77759 -7.75364 -5.21232 -0.58556 0.19456 0.54809 0.84255 1.47270 1.49343 1.55882 2.24506 2.29859 2.52377 2.55691 3.20921 3.38091 3.48346 3.63972 3.68722 3.84042 4.01077 4.03610 4.09520 4.17424 4.34540 4.36916 4.42769 4.59202 4.64168 4.70369 4.75865 4.80867 4.82556 4.84050 4.91733 5.00707 5.07969 5.12805 5.25625 5.29753 5.42903 5.57387 5.69178 5.73918 5.75011 6.32140 6.36478 6.66620 7.14997 7.20157 7.91591 8.36112 9.26568 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009768 B = 0.004565 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2865.724497 B = 6132.265601 C = 8391.006994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.156 3.844 3 H 0.069 0.931 4 C 0.110 3.890 5 N -0.686 5.686 6 C 0.581 3.419 7 O -0.580 6.580 8 C -0.014 4.014 9 C -0.236 4.236 10 S 0.324 5.676 11 C 0.000 4.000 12 C 0.155 3.845 13 H 0.083 0.917 14 C -0.148 4.148 15 C -0.145 4.145 16 C 0.039 3.961 17 O -0.382 6.382 18 N -0.457 5.457 19 N -0.602 5.602 20 C 0.184 3.816 21 C -0.261 4.261 22 H 0.070 0.930 23 C -0.040 4.040 24 N -0.925 5.925 25 Si 0.956 3.044 26 H -0.291 1.291 27 H -0.297 1.297 28 H -0.272 1.272 29 H 0.078 0.922 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.047 0.953 34 H 0.415 0.585 35 H 0.203 0.797 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.123 0.877 42 H -0.005 1.005 43 H 0.015 0.985 44 H 0.025 0.975 45 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.976 0.388 -8.566 16.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.048 3.952 3 H 0.088 0.912 4 C -0.016 4.016 5 N -0.334 5.334 6 C 0.366 3.634 7 O -0.463 6.463 8 C -0.149 4.149 9 C -0.379 4.379 10 S 0.582 5.418 11 C -0.279 4.279 12 C 0.094 3.906 13 H 0.101 0.899 14 C -0.187 4.187 15 C -0.182 4.182 16 C -0.037 4.037 17 O -0.301 6.301 18 N -0.174 5.174 19 N -0.325 5.325 20 C 0.039 3.961 21 C -0.391 4.391 22 H 0.088 0.912 23 C -0.236 4.236 24 N -0.571 5.571 25 Si 0.786 3.214 26 H -0.218 1.218 27 H -0.224 1.224 28 H -0.197 1.197 29 H 0.097 0.903 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.065 0.935 34 H 0.252 0.748 35 H 0.220 0.780 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.124 0.876 39 H 0.111 0.889 40 H 0.090 0.910 41 H 0.141 0.859 42 H 0.014 0.986 43 H 0.034 0.966 44 H 0.044 0.956 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 14.315 0.078 -9.274 17.057 hybrid contribution -0.815 0.247 1.648 1.855 sum 13.501 0.325 -7.626 15.509 Atomic orbital electron populations 1.22045 0.94544 1.01817 1.02173 1.20851 0.94592 0.95374 0.84354 0.91249 1.22020 0.79146 1.00617 0.99800 1.45829 1.08575 1.56427 1.22540 1.17413 0.85460 0.78054 0.82520 1.90703 1.69464 1.51101 1.35000 1.20306 0.95527 1.06019 0.93081 1.27015 1.00015 1.05261 1.05611 1.82168 1.00393 1.47433 1.11855 1.27242 0.94008 1.04296 1.02360 1.20966 0.85017 0.95843 0.88770 0.89906 1.23039 0.97771 0.96873 1.01066 1.23191 0.93125 0.97610 1.04281 1.23923 0.88589 0.94993 0.96185 1.88885 1.16234 1.75252 1.49689 1.66828 1.05282 1.19457 1.25819 1.44093 1.57588 1.09407 1.21454 1.20388 0.94017 0.84572 0.97099 1.19437 1.17448 0.90958 1.11226 0.91230 1.25536 0.98900 0.96683 1.02473 1.70273 1.40870 1.08810 1.37115 0.85449 0.77193 0.78161 0.80595 1.21846 1.22359 1.19710 0.90302 0.93110 0.92610 0.90703 0.93460 0.74817 0.77965 0.89661 0.90659 0.87618 0.88941 0.90956 0.85882 0.98627 0.96599 0.95630 0.94720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.69 9.18 71.98 0.66 -4.03 16 2 C 0.16 6.12 2.87 45.00 0.13 6.24 16 3 H 0.07 2.71 7.85 -2.39 -0.02 2.70 16 4 C 0.11 4.33 4.97 86.38 0.43 4.76 16 5 N -0.69 -29.97 5.38 -466.52 -2.51 -32.48 16 6 C 0.58 25.09 7.80 86.62 0.68 25.76 16 7 O -0.58 -26.27 16.71 -4.15 -0.07 -26.34 16 8 C -0.01 -0.53 6.70 40.56 0.27 -0.26 16 9 C -0.24 -7.05 10.62 67.12 0.71 -6.34 16 10 S 0.32 7.54 22.72 -56.49 -1.28 6.26 16 11 C 0.00 0.00 6.11 88.58 0.54 0.54 16 12 C 0.16 4.19 3.94 30.22 0.12 4.31 16 13 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 14 C -0.15 -3.24 6.63 31.58 0.21 -3.03 16 15 C -0.14 -1.97 7.15 31.90 0.23 -1.74 16 16 C 0.04 0.56 7.72 72.67 0.56 1.13 16 17 O -0.38 -8.86 11.00 -148.98 -1.64 -10.50 16 18 N -0.46 -17.79 10.12 -180.83 -1.83 -19.62 16 19 N -0.60 -29.06 2.29 -702.79 -1.61 -30.67 16 20 C 0.18 9.20 8.11 127.77 1.04 10.24 16 21 C -0.26 -13.78 9.34 84.03 0.79 -13.00 16 22 H 0.07 3.60 7.81 -2.91 -0.02 3.58 16 23 C -0.04 -2.17 5.06 84.86 0.43 -1.74 16 24 N -0.92 -53.50 10.67 21.65 0.23 -53.27 16 25 Si 0.96 44.49 29.58 68.60 2.03 46.52 16 26 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 27 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 28 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 29 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.05 1.64 6.66 -2.39 -0.02 1.62 16 31 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 33 H 0.05 1.97 7.84 -2.39 -0.02 1.95 16 34 H 0.41 19.88 7.41 -92.70 -0.69 19.19 16 35 H 0.20 5.24 8.03 -2.91 -0.02 5.22 16 36 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 37 H 0.07 1.74 7.69 -2.39 -0.02 1.72 16 38 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.00 -0.26 7.40 -2.39 -0.02 -0.28 16 43 H 0.02 0.84 7.21 -2.39 -0.02 0.82 16 44 H 0.03 1.11 6.44 -2.39 -0.02 1.09 16 45 H 0.24 13.90 8.31 -92.71 -0.77 13.13 16 Total: -1.00 -69.37 381.93 0.43 -68.94 By element: Atomic # 1 Polarization: 28.00 SS G_CDS: 0.32 Total: 28.32 kcal Atomic # 6 Polarization: 16.05 SS G_CDS: 6.79 Total: 22.84 kcal Atomic # 7 Polarization: -130.32 SS G_CDS: -5.72 Total: -136.04 kcal Atomic # 8 Polarization: -35.13 SS G_CDS: -1.71 Total: -36.84 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 16 Polarization: 7.54 SS G_CDS: -1.28 Total: 6.26 kcal Total: -69.37 0.43 -68.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485304166.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.427 kcal (2) G-P(sol) polarization free energy of solvation -69.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds