Wall clock time and date at job start Sat Apr 11 2020 05:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47191 * 2 1 4 4 N 1.46501 * 109.47063 * 239.99899 * 2 1 3 5 5 C 1.36933 * 120.00086 * 85.00111 * 4 2 1 6 6 H 1.08002 * 120.00015 * 359.97438 * 5 4 2 7 7 C 1.38817 * 119.99931 * 179.97438 * 5 4 2 8 8 N 1.31617 * 119.99652 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 120.00130 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.46828 * 89.99730 * 9 7 5 11 11 H 1.48499 * 109.47221 * 209.99985 * 9 7 5 12 12 H 1.48501 * 109.47211 * 330.00314 * 9 7 5 13 13 C 1.53000 * 109.47238 * 120.00036 * 2 1 3 14 14 H 1.09002 * 109.50834 * 299.89794 * 13 2 1 15 15 C 1.52877 * 109.62754 * 179.90441 * 13 2 1 16 16 N 1.47150 * 108.60851 * 187.89820 * 15 13 2 17 17 C 1.34780 * 120.97836 * 230.50391 * 16 15 13 18 18 O 1.21280 * 120.00423 * 359.71247 * 17 16 15 19 19 C 1.50701 * 119.99795 * 179.71924 * 17 16 15 20 20 C 1.52997 * 109.47212 * 179.97438 * 19 17 16 21 21 C 1.50697 * 109.47466 * 179.97438 * 20 19 17 22 22 C 1.33638 * 126.03655 * 89.99994 * 21 20 19 23 23 N 1.31783 * 114.50066 * 180.02562 * 22 21 20 24 24 C 1.29021 * 117.12379 * 359.97438 * 23 22 21 25 25 S 1.70972 * 110.16694 * 359.73029 * 24 23 22 26 26 C 1.47148 * 118.03943 * 50.22771 * 16 15 13 27 27 C 1.53299 * 108.38338 * 309.71610 * 26 16 15 28 28 O 1.42966 * 109.22323 * 52.30153 * 27 26 16 29 29 H 1.08996 * 109.47228 * 59.99838 * 1 2 3 30 30 H 1.08998 * 109.47191 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46965 * 300.00309 * 1 2 3 32 32 H 0.97008 * 119.99814 * 265.00526 * 4 2 1 33 33 H 0.97003 * 120.00211 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.61582 * 68.07935 * 15 13 2 35 35 H 1.09000 * 109.52423 * 307.66174 * 15 13 2 36 36 H 1.09002 * 109.47060 * 299.99722 * 19 17 16 37 37 H 1.09001 * 109.47380 * 59.99809 * 19 17 16 38 38 H 1.09002 * 109.47153 * 299.99998 * 20 19 17 39 39 H 1.08998 * 109.47533 * 59.99628 * 20 19 17 40 40 H 1.08007 * 122.75012 * 0.02562 * 22 21 20 41 41 H 1.08003 * 124.91769 * 180.02562 * 24 23 22 42 42 H 1.09002 * 109.68086 * 69.43709 * 26 16 15 43 43 H 1.08992 * 109.68406 * 189.99302 * 26 16 15 44 44 H 1.08996 * 109.51502 * 172.22173 * 27 26 16 45 45 H 1.09001 * 109.51279 * 292.37670 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1491 -0.0076 -2.3757 6 1 1.8919 1.0403 -2.4244 7 6 2.6123 -0.6619 -3.5090 8 7 2.7375 -0.0054 -4.6429 9 14 3.0579 -2.4740 -3.4247 10 1 1.8612 -3.2933 -3.7439 11 1 4.1335 -2.7654 -4.4062 12 1 3.5331 -2.8038 -2.0570 13 6 2.0400 -0.7213 1.2492 14 1 1.6785 -0.2068 2.1396 15 6 3.5688 -0.7254 1.2516 16 7 4.0343 -1.5827 2.3533 17 6 4.9520 -1.1408 3.2359 18 8 5.4107 -0.0235 3.1259 19 6 5.4085 -2.0353 4.3596 20 6 6.4453 -1.2980 5.2094 21 6 6.9013 -2.1921 6.3335 22 6 7.9290 -3.0454 6.2918 23 7 8.1267 -3.7176 7.4080 24 6 7.3234 -3.4785 8.3889 25 16 6.1786 -2.2916 7.9373 26 6 3.4637 -2.9343 2.4665 27 6 1.9361 -2.8207 2.4081 28 8 1.5639 -2.0693 1.2501 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.2489 -1.6319 -1.1526 33 1 3.0609 -0.4626 -5.4349 34 1 3.9373 0.2902 1.3959 35 1 3.9335 -1.1174 0.3022 36 1 4.5537 -2.3036 4.9806 37 1 5.8550 -2.9395 3.9459 38 1 7.3000 -1.0300 4.5883 39 1 5.9993 -0.3936 5.6232 40 1 8.5468 -3.1736 5.4153 41 1 7.3705 -3.9552 9.3568 42 1 3.8177 -3.5525 1.6414 43 1 3.7626 -3.3808 3.4148 44 1 1.4987 -3.8174 2.3513 45 1 1.5742 -2.3139 3.3027 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485641944.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:03 Heat of formation + Delta-G solvation = -15.707164 kcal Electronic energy + Delta-G solvation = -27290.026847 eV Core-core repulsion = 23435.188819 eV Total energy + Delta-G solvation = -3854.838028 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.54294 -39.98087 -38.61580 -35.71382 -34.69372 -34.57109 -32.33467 -30.69225 -29.86455 -28.94684 -27.86169 -26.16605 -24.41631 -23.58829 -23.30441 -22.06386 -20.44502 -19.86494 -19.17584 -18.52518 -17.81075 -17.32548 -16.52132 -16.24214 -15.92115 -15.59866 -15.14060 -14.87591 -14.79131 -14.39899 -14.34836 -14.07702 -13.95059 -13.58892 -13.13004 -13.02988 -12.83451 -12.68598 -12.44201 -12.18150 -12.09547 -11.93742 -11.65913 -11.34955 -11.28054 -10.95880 -10.87422 -10.65592 -10.36406 -10.09716 -10.06331 -9.99604 -9.87493 -9.63995 -9.55931 -9.33430 -8.95874 -8.54298 -7.24898 -5.75481 -3.10469 0.27301 0.92881 1.32867 2.41689 2.47390 2.78568 3.38722 3.43264 3.46701 3.79594 3.91890 4.14086 4.51884 4.58109 4.60999 4.65235 4.71075 4.82578 4.85452 4.95804 5.00283 5.12486 5.16087 5.20786 5.32218 5.52351 5.54517 5.55631 5.59723 5.63398 5.64596 5.76754 5.84264 6.10421 6.18692 6.28394 6.38133 6.46536 6.69850 7.03296 7.24383 7.27842 7.28614 8.00804 8.01563 8.43743 9.23082 9.95148 10.16234 11.42821 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019183 B = 0.002432 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.288773 B =11511.305430 C =11945.826313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.188 3.812 3 H 0.069 0.931 4 N -0.742 5.742 5 C -0.242 4.242 6 H 0.091 0.909 7 C 0.005 3.995 8 N -0.934 5.934 9 Si 0.884 3.116 10 H -0.285 1.285 11 H -0.293 1.293 12 H -0.277 1.277 13 C 0.075 3.925 14 H 0.059 0.941 15 C 0.083 3.917 16 N -0.614 5.614 17 C 0.514 3.486 18 O -0.538 6.538 19 C -0.134 4.134 20 C -0.028 4.028 21 C -0.211 4.211 22 C 0.031 3.969 23 N -0.470 5.470 24 C 0.013 3.987 25 S 0.120 5.880 26 C 0.069 3.931 27 C 0.047 3.953 28 O -0.363 6.363 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.036 0.964 32 H 0.367 0.633 33 H 0.259 0.741 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.177 0.823 41 H 0.198 0.802 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.103 0.897 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.171 -8.145 27.872 29.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.078 3.922 3 H 0.087 0.913 4 N -0.386 5.386 5 C -0.372 4.372 6 H 0.108 0.892 7 C -0.191 4.191 8 N -0.581 5.581 9 Si 0.715 3.285 10 H -0.211 1.211 11 H -0.220 1.220 12 H -0.204 1.204 13 C 0.016 3.984 14 H 0.077 0.923 15 C -0.039 4.039 16 N -0.348 5.348 17 C 0.303 3.697 18 O -0.415 6.415 19 C -0.175 4.175 20 C -0.068 4.068 21 C -0.332 4.332 22 C -0.120 4.120 23 N -0.183 5.183 24 C -0.285 4.285 25 S 0.373 5.627 26 C -0.054 4.054 27 C -0.031 4.031 28 O -0.281 6.281 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.200 0.800 33 H 0.069 0.931 34 H 0.119 0.881 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.105 0.895 40 H 0.194 0.806 41 H 0.215 0.785 42 H 0.098 0.902 43 H 0.108 0.892 44 H 0.121 0.879 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.951 -7.381 28.101 29.322 hybrid contribution 0.977 -1.612 -0.527 1.957 sum 4.928 -8.993 27.575 29.420 Atomic orbital electron populations 1.22316 0.97958 1.01587 1.00207 1.20235 0.92975 0.94903 0.84062 0.91316 1.42728 1.79336 1.09759 1.06780 1.19074 1.36893 0.95578 0.85632 0.89157 1.24648 1.01476 0.97390 0.95551 1.69699 1.52682 1.35542 1.00220 0.86553 0.78060 0.87027 0.76888 1.21127 1.21959 1.20354 1.22904 0.92277 0.83285 0.99951 0.92260 1.22360 0.94949 0.96883 0.89664 1.48240 1.41628 1.15523 1.29370 1.20525 0.78852 0.87701 0.82672 1.90722 1.55873 1.20618 1.74299 1.21711 1.00234 0.99545 0.96016 1.19792 0.99473 0.95614 0.91922 1.26063 1.01993 1.05837 0.99280 1.21839 0.98035 0.94964 0.97130 1.66333 1.26504 1.25369 1.00057 1.28391 0.95924 1.01179 1.02959 1.84149 1.33807 1.37827 1.06957 1.22506 0.95501 0.84112 1.03307 1.22904 0.92917 0.97617 0.89668 1.88080 1.75284 1.23895 1.40877 0.92236 0.92657 0.94511 0.79970 0.93108 0.88102 0.89053 0.88793 0.88444 0.88533 0.89475 0.80633 0.78507 0.90165 0.89163 0.87859 0.92988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 9.35 37.16 0.35 -2.46 16 2 C 0.19 3.52 2.74 -67.93 -0.19 3.33 16 3 H 0.07 1.30 8.08 -51.93 -0.42 0.88 16 4 N -0.74 -17.10 4.09 -53.42 -0.22 -17.32 16 5 C -0.24 -6.68 10.41 -15.06 -0.16 -6.84 16 6 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 7 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 8 N -0.93 -29.23 13.97 55.49 0.78 -28.45 16 9 Si 0.88 22.21 27.73 -169.99 -4.71 17.50 16 10 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 11 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 12 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 13 C 0.08 1.17 2.51 -26.79 -0.07 1.10 16 14 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 15 C 0.08 1.33 5.85 -3.75 -0.02 1.31 16 16 N -0.61 -7.90 3.03 -172.53 -0.52 -8.42 16 17 C 0.51 6.46 7.71 -10.98 -0.08 6.37 16 18 O -0.54 -8.75 15.45 5.56 0.09 -8.66 16 19 C -0.13 -1.09 4.06 -27.88 -0.11 -1.21 16 20 C -0.03 -0.23 5.04 -27.89 -0.14 -0.37 16 21 C -0.21 -1.63 5.85 -35.92 -0.21 -1.84 16 22 C 0.03 0.26 11.25 -19.18 -0.22 0.05 16 23 N -0.47 -4.36 10.54 -15.75 -0.17 -4.52 16 24 C 0.01 0.09 12.23 51.58 0.63 0.72 16 25 S 0.12 0.77 23.22 -107.50 -2.50 -1.73 16 26 C 0.07 0.68 6.54 -3.53 -0.02 0.66 16 27 C 0.05 0.49 6.99 37.31 0.26 0.75 16 28 O -0.36 -5.50 9.22 -35.23 -0.32 -5.83 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.05 0.99 7.68 -51.93 -0.40 0.59 16 31 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.37 8.53 5.06 -40.82 -0.21 8.33 16 33 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 34 H 0.10 1.71 7.08 -51.93 -0.37 1.35 16 35 H 0.09 1.72 7.25 -51.93 -0.38 1.34 16 36 H 0.09 0.61 7.66 -51.93 -0.40 0.21 16 37 H 0.10 0.67 8.01 -51.93 -0.42 0.25 16 38 H 0.10 0.85 8.10 -51.93 -0.42 0.43 16 39 H 0.09 0.77 8.10 -51.93 -0.42 0.35 16 40 H 0.18 1.23 8.06 -52.48 -0.42 0.81 16 41 H 0.20 0.70 8.06 -52.48 -0.42 0.28 16 42 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.09 0.58 6.05 -51.93 -0.31 0.26 16 44 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 378.43 15.07 5.70 5.70 Total: -1.00 -34.59 378.43 -8.67 -43.26 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -6.71 Total: 6.84 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -0.08 Total: 1.63 kcal Atomic # 7 Polarization: -58.59 SS G_CDS: -0.13 Total: -58.72 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.24 Total: -14.49 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.71 Total: 17.50 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.50 Total: -1.73 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.59 -8.67 -43.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485641944.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.554 kcal (2) G-P(sol) polarization free energy of solvation -34.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds