Wall clock time and date at job start Sat Apr 11 2020 05:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47191 * 2 1 4 4 N 1.46501 * 109.47063 * 239.99899 * 2 1 3 5 5 C 1.36933 * 120.00086 * 85.00111 * 4 2 1 6 6 H 1.08002 * 120.00015 * 359.97438 * 5 4 2 7 7 C 1.38817 * 119.99931 * 179.97438 * 5 4 2 8 8 N 1.31617 * 119.99652 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 120.00130 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.46828 * 89.99730 * 9 7 5 11 11 H 1.48499 * 109.47221 * 209.99985 * 9 7 5 12 12 H 1.48501 * 109.47211 * 330.00314 * 9 7 5 13 13 C 1.53000 * 109.47238 * 120.00036 * 2 1 3 14 14 H 1.09002 * 109.50834 * 299.89794 * 13 2 1 15 15 C 1.52877 * 109.62754 * 179.90441 * 13 2 1 16 16 N 1.47150 * 108.60851 * 187.89820 * 15 13 2 17 17 C 1.34780 * 120.97836 * 230.50391 * 16 15 13 18 18 O 1.21280 * 120.00423 * 359.71247 * 17 16 15 19 19 C 1.50701 * 119.99795 * 179.71924 * 17 16 15 20 20 C 1.52997 * 109.47212 * 179.97438 * 19 17 16 21 21 C 1.50697 * 109.47466 * 179.97438 * 20 19 17 22 22 C 1.33638 * 126.03655 * 89.99994 * 21 20 19 23 23 N 1.31783 * 114.50066 * 180.02562 * 22 21 20 24 24 C 1.29021 * 117.12379 * 359.97438 * 23 22 21 25 25 S 1.70972 * 110.16694 * 359.73029 * 24 23 22 26 26 C 1.47148 * 118.03943 * 50.22771 * 16 15 13 27 27 C 1.53299 * 108.38338 * 309.71610 * 26 16 15 28 28 O 1.42966 * 109.22323 * 52.30153 * 27 26 16 29 29 H 1.08996 * 109.47228 * 59.99838 * 1 2 3 30 30 H 1.08998 * 109.47191 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46965 * 300.00309 * 1 2 3 32 32 H 0.97008 * 119.99814 * 265.00526 * 4 2 1 33 33 H 0.97003 * 120.00211 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.61582 * 68.07935 * 15 13 2 35 35 H 1.09000 * 109.52423 * 307.66174 * 15 13 2 36 36 H 1.09002 * 109.47060 * 299.99722 * 19 17 16 37 37 H 1.09001 * 109.47380 * 59.99809 * 19 17 16 38 38 H 1.09002 * 109.47153 * 299.99998 * 20 19 17 39 39 H 1.08998 * 109.47533 * 59.99628 * 20 19 17 40 40 H 1.08007 * 122.75012 * 0.02562 * 22 21 20 41 41 H 1.08003 * 124.91769 * 180.02562 * 24 23 22 42 42 H 1.09002 * 109.68086 * 69.43709 * 26 16 15 43 43 H 1.08992 * 109.68406 * 189.99302 * 26 16 15 44 44 H 1.08996 * 109.51502 * 172.22173 * 27 26 16 45 45 H 1.09001 * 109.51279 * 292.37670 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1491 -0.0076 -2.3757 6 1 1.8919 1.0403 -2.4244 7 6 2.6123 -0.6619 -3.5090 8 7 2.7375 -0.0054 -4.6429 9 14 3.0579 -2.4740 -3.4247 10 1 1.8612 -3.2933 -3.7439 11 1 4.1335 -2.7654 -4.4062 12 1 3.5331 -2.8038 -2.0570 13 6 2.0400 -0.7213 1.2492 14 1 1.6785 -0.2068 2.1396 15 6 3.5688 -0.7254 1.2516 16 7 4.0343 -1.5827 2.3533 17 6 4.9520 -1.1408 3.2359 18 8 5.4107 -0.0235 3.1259 19 6 5.4085 -2.0353 4.3596 20 6 6.4453 -1.2980 5.2094 21 6 6.9013 -2.1921 6.3335 22 6 7.9290 -3.0454 6.2918 23 7 8.1267 -3.7176 7.4080 24 6 7.3234 -3.4785 8.3889 25 16 6.1786 -2.2916 7.9373 26 6 3.4637 -2.9343 2.4665 27 6 1.9361 -2.8207 2.4081 28 8 1.5639 -2.0693 1.2501 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.2489 -1.6319 -1.1526 33 1 3.0609 -0.4626 -5.4349 34 1 3.9373 0.2902 1.3959 35 1 3.9335 -1.1174 0.3022 36 1 4.5537 -2.3036 4.9806 37 1 5.8550 -2.9395 3.9459 38 1 7.3000 -1.0300 4.5883 39 1 5.9993 -0.3936 5.6232 40 1 8.5468 -3.1736 5.4153 41 1 7.3705 -3.9552 9.3568 42 1 3.8177 -3.5525 1.6414 43 1 3.7626 -3.3808 3.4148 44 1 1.4987 -3.8174 2.3513 45 1 1.5742 -2.3139 3.3027 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485641944.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:03 Heat of formation + Delta-G solvation = -40.048652 kcal Electronic energy + Delta-G solvation = -27291.082373 eV Core-core repulsion = 23435.188819 eV Total energy + Delta-G solvation = -3855.893554 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.54134 -40.57969 -39.71505 -37.24810 -35.80123 -35.27987 -34.22384 -32.11045 -30.79125 -30.34106 -28.82355 -26.88262 -25.69567 -24.93110 -24.35175 -23.15307 -21.36718 -20.98217 -20.18484 -19.74121 -19.09588 -18.24470 -17.70618 -17.09458 -16.97859 -16.40082 -16.30730 -16.23026 -15.91520 -15.43730 -15.21958 -15.00102 -14.90794 -14.75559 -14.52986 -14.33741 -13.98176 -13.77369 -13.57927 -13.48304 -13.21609 -12.86821 -12.81092 -12.67588 -12.54657 -12.47888 -12.10919 -11.88459 -11.81335 -11.72916 -11.57996 -11.15173 -11.01009 -10.87605 -10.59028 -10.20237 -9.87430 -9.64908 -9.26257 -8.00164 -5.31728 -0.24820 0.42960 0.81422 1.36799 1.40084 1.47131 1.52498 1.76422 1.91436 2.49455 2.75149 3.30228 3.32126 3.53601 3.57509 3.76294 3.86729 3.92657 3.94985 3.98805 4.14778 4.16538 4.23852 4.33757 4.38688 4.46620 4.51233 4.58436 4.61753 4.76204 4.80975 4.84031 4.94758 4.99207 5.02170 5.03191 5.19614 5.21113 5.29972 5.57183 5.79631 6.19718 6.27444 6.30829 6.75704 7.04834 7.10885 7.87222 8.07843 9.21565 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019183 B = 0.002432 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.288773 B =11511.305430 C =11945.826313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.177 3.823 3 H 0.059 0.941 4 N -0.742 5.742 5 C -0.221 4.221 6 H 0.059 0.941 7 C -0.066 4.066 8 N -0.985 5.985 9 Si 0.953 3.047 10 H -0.280 1.280 11 H -0.299 1.299 12 H -0.255 1.255 13 C 0.093 3.907 14 H 0.082 0.918 15 C 0.089 3.911 16 N -0.615 5.615 17 C 0.510 3.490 18 O -0.583 6.583 19 C -0.122 4.122 20 C -0.022 4.022 21 C -0.220 4.220 22 C 0.021 3.979 23 N -0.504 5.504 24 C 0.015 3.985 25 S 0.152 5.848 26 C 0.066 3.934 27 C 0.040 3.960 28 O -0.386 6.386 29 H 0.034 0.966 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.368 0.632 33 H 0.256 0.744 34 H 0.081 0.919 35 H 0.058 0.942 36 H 0.122 0.878 37 H 0.117 0.883 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.181 0.819 41 H 0.226 0.774 42 H 0.074 0.926 43 H 0.133 0.867 44 H 0.130 0.870 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.566 -10.827 31.564 33.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.068 3.932 3 H 0.077 0.923 4 N -0.387 5.387 5 C -0.352 4.352 6 H 0.077 0.923 7 C -0.257 4.257 8 N -0.636 5.636 9 Si 0.781 3.219 10 H -0.207 1.207 11 H -0.226 1.226 12 H -0.180 1.180 13 C 0.034 3.966 14 H 0.100 0.900 15 C -0.035 4.035 16 N -0.348 5.348 17 C 0.301 3.699 18 O -0.464 6.464 19 C -0.162 4.162 20 C -0.062 4.062 21 C -0.342 4.342 22 C -0.129 4.129 23 N -0.218 5.218 24 C -0.282 4.282 25 S 0.405 5.595 26 C -0.056 4.056 27 C -0.037 4.037 28 O -0.305 6.305 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.202 0.798 33 H 0.065 0.935 34 H 0.100 0.900 35 H 0.077 0.923 36 H 0.140 0.860 37 H 0.135 0.865 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.198 0.802 41 H 0.242 0.758 42 H 0.092 0.908 43 H 0.151 0.849 44 H 0.148 0.852 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.315 -10.093 31.875 33.598 hybrid contribution 1.134 -0.697 -1.531 2.029 sum 4.449 -10.789 30.343 32.510 Atomic orbital electron populations 1.22150 0.96471 1.01620 1.00661 1.20476 0.93916 0.94703 0.84073 0.92330 1.42675 1.79597 1.09724 1.06655 1.19041 1.34493 0.94444 0.87254 0.92327 1.25430 1.02747 1.02224 0.95279 1.69878 1.55056 1.37568 1.01103 0.85436 0.77524 0.81279 0.77672 1.20657 1.22647 1.17966 1.22516 0.91488 0.84135 0.98504 0.90032 1.21998 0.95472 0.96408 0.89614 1.48326 1.41782 1.16356 1.28329 1.21340 0.77850 0.87614 0.83117 1.90706 1.57267 1.22898 1.75480 1.21721 1.01151 0.98861 0.94490 1.19652 0.99066 0.95503 0.92023 1.25960 1.02413 1.05792 0.99987 1.21989 0.98352 0.95187 0.97395 1.66375 1.27914 1.26661 1.00852 1.28925 0.95155 1.00681 1.03448 1.84040 1.32890 1.37038 1.05534 1.22771 0.95117 0.82274 1.05404 1.23264 0.93327 0.98446 0.88656 1.88030 1.75551 1.23421 1.43519 0.94716 0.92718 0.91111 0.79821 0.93536 0.90031 0.92325 0.85992 0.86459 0.89814 0.90308 0.80249 0.75787 0.90769 0.84905 0.85178 0.91138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.04 9.35 71.98 0.67 -4.37 16 2 C 0.18 6.56 2.74 44.99 0.12 6.69 16 3 H 0.06 2.28 8.08 -2.39 -0.02 2.26 16 4 N -0.74 -34.40 4.09 -322.94 -1.32 -35.72 16 5 C -0.22 -12.59 10.41 84.04 0.87 -11.72 16 6 H 0.06 3.65 8.06 -2.91 -0.02 3.62 16 7 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 8 N -0.98 -63.97 13.97 21.65 0.30 -63.67 16 9 Si 0.95 46.58 27.73 68.60 1.90 48.48 16 10 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 11 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 12 H -0.25 -11.34 6.52 99.48 0.65 -10.69 16 13 C 0.09 2.73 2.51 30.55 0.08 2.81 16 14 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 15 C 0.09 2.80 5.85 86.21 0.50 3.31 16 16 N -0.61 -14.55 3.03 -818.16 -2.48 -17.02 16 17 C 0.51 11.94 7.71 87.66 0.68 12.61 16 18 O -0.58 -18.98 15.45 -3.03 -0.05 -19.02 16 19 C -0.12 -1.60 4.06 29.85 0.12 -1.48 16 20 C -0.02 -0.33 5.04 29.85 0.15 -0.18 16 21 C -0.22 -2.94 5.85 24.64 0.14 -2.79 16 22 C 0.02 0.33 11.25 83.66 0.94 1.27 16 23 N -0.50 -8.40 10.54 -203.74 -2.15 -10.55 16 24 C 0.01 0.16 12.23 130.66 1.60 1.76 16 25 S 0.15 1.51 23.22 -56.49 -1.31 0.20 16 26 C 0.07 1.04 6.54 86.36 0.57 1.60 16 27 C 0.04 0.65 6.99 72.08 0.50 1.16 16 28 O -0.39 -10.58 9.22 -148.98 -1.37 -11.95 16 29 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.05 1.85 7.68 -2.39 -0.02 1.83 16 31 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 32 H 0.37 16.84 5.06 -92.70 -0.47 16.37 16 33 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 34 H 0.08 2.86 7.08 -2.39 -0.02 2.84 16 35 H 0.06 2.23 7.25 -2.39 -0.02 2.21 16 36 H 0.12 0.96 7.66 -2.39 -0.02 0.95 16 37 H 0.12 1.14 8.01 -2.39 -0.02 1.13 16 38 H 0.08 1.44 8.10 -2.39 -0.02 1.42 16 39 H 0.08 1.30 8.10 -2.39 -0.02 1.28 16 40 H 0.18 2.34 8.06 -2.91 -0.02 2.32 16 41 H 0.23 0.87 8.06 -2.91 -0.02 0.85 16 42 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.13 0.94 6.05 -2.39 -0.01 0.93 16 44 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -79.04 378.43 1.42 -77.62 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: 0.47 Total: 24.43 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: 7.42 Total: 7.21 kcal Atomic # 7 Polarization: -121.32 SS G_CDS: -5.64 Total: -126.96 kcal Atomic # 8 Polarization: -29.55 SS G_CDS: -1.42 Total: -30.97 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 1.90 Total: 48.48 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -1.31 Total: 0.20 kcal Total: -79.04 1.42 -77.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485641944.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.570 kcal (2) G-P(sol) polarization free energy of solvation -79.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds