Wall clock time and date at job start Sat Apr 11 2020 05:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 5 5 C 1.36940 * 120.00565 * 275.00309 * 4 2 1 6 6 H 1.08004 * 119.99402 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00150 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00111 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99847 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.47050 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47205 * 119.99454 * 9 7 5 12 12 H 1.48500 * 109.46799 * 240.00306 * 9 7 5 13 13 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 14 14 H 1.09005 * 109.51319 * 65.10012 * 13 2 1 15 15 C 1.53299 * 109.51743 * 185.25379 * 13 2 1 16 16 N 1.47147 * 108.38544 * 172.22967 * 15 13 2 17 17 C 1.34779 * 120.98424 * 129.44557 * 16 15 13 18 18 O 1.21279 * 119.99772 * 0.02562 * 17 16 15 19 19 C 1.50696 * 120.00009 * 180.02562 * 17 16 15 20 20 C 1.52998 * 109.47384 * 179.97438 * 19 17 16 21 21 C 1.50696 * 109.47725 * 180.02562 * 20 19 17 22 22 C 1.33634 * 126.04029 * 89.71424 * 21 20 19 23 23 N 1.31780 * 114.50045 * 179.79714 * 22 21 20 24 24 C 1.29030 * 117.12764 * 0.51253 * 23 22 21 25 25 S 1.70979 * 110.16237 * 359.72162 * 24 23 22 26 26 C 1.47152 * 118.03435 * 309.46231 * 16 15 13 27 27 C 1.53287 * 108.38588 * 50.53791 * 26 16 15 28 28 O 1.42959 * 109.51491 * 305.00226 * 13 2 1 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 32 32 H 0.97006 * 119.99921 * 94.99902 * 4 2 1 33 33 H 0.96997 * 119.99796 * 179.97438 * 8 7 5 34 34 H 1.09004 * 109.68136 * 291.95232 * 15 13 2 35 35 H 1.09004 * 109.67890 * 52.50364 * 15 13 2 36 36 H 1.08996 * 109.47552 * 300.00410 * 19 17 16 37 37 H 1.09008 * 109.47180 * 60.00149 * 19 17 16 38 38 H 1.09005 * 109.46657 * 300.00425 * 20 19 17 39 39 H 1.08999 * 109.47065 * 59.99898 * 20 19 17 40 40 H 1.08004 * 122.75117 * 359.97255 * 22 21 20 41 41 H 1.07990 * 124.92083 * 179.75573 * 24 23 22 42 42 H 1.09007 * 109.68189 * 290.81370 * 26 16 15 43 43 H 1.09000 * 109.71519 * 170.28275 * 26 16 15 44 44 H 1.09004 * 109.51892 * 187.77227 * 27 26 16 45 45 H 1.09004 * 109.55629 * 67.65024 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0074 2.3758 6 1 1.8926 1.0406 2.4241 7 6 2.6113 -0.6619 3.5094 8 7 2.9234 -1.9392 3.4505 9 14 2.7890 0.2698 5.1186 10 1 2.3752 1.6824 4.9211 11 1 1.9278 -0.3587 6.1522 12 1 4.2058 0.2269 5.5615 13 6 2.0400 -0.7212 -1.2491 14 1 1.7536 -0.1579 -2.1373 15 6 3.5673 -0.8374 -1.1857 16 7 4.0142 -1.6931 -2.2962 17 6 4.9979 -1.2945 -3.1269 18 8 5.5291 -0.2164 -2.9643 19 6 5.4378 -2.1884 -4.2575 20 6 6.5589 -1.5041 -5.0422 21 6 6.9984 -2.3977 -6.1733 22 6 6.4907 -2.4087 -7.4094 23 7 7.0499 -3.2825 -8.2220 24 6 7.9942 -4.0162 -7.7374 25 16 8.2672 -3.6179 -6.0972 26 6 3.3550 -2.9967 -2.4734 27 6 1.8382 -2.7755 -2.4741 28 8 1.4706 -2.0311 -1.3103 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 2.2490 -1.6317 1.1527 33 1 3.2468 -2.3964 4.2425 34 1 4.0150 0.1518 -1.2814 35 1 3.8623 -1.2842 -0.2362 36 1 5.8010 -3.1333 -3.8535 37 1 4.5936 -2.3775 -4.9207 38 1 6.1951 -0.5593 -5.4463 39 1 7.4031 -1.3146 -4.3793 40 1 5.6897 -1.7532 -7.7179 41 1 8.5343 -4.7720 -8.2881 42 1 3.6288 -3.6610 -1.6536 43 1 3.6621 -3.4382 -3.4215 44 1 1.3295 -3.7395 -2.4654 45 1 1.5509 -2.2204 -3.3671 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485641945.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:06 Heat of formation + Delta-G solvation = -19.092680 kcal Electronic energy + Delta-G solvation = -27185.508981 eV Core-core repulsion = 23330.524146 eV Total energy + Delta-G solvation = -3854.984835 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.41080 -39.91076 -38.46497 -35.52158 -34.56231 -34.47891 -32.30051 -30.44989 -29.72017 -28.39232 -27.73951 -26.09118 -24.32664 -23.54154 -23.46915 -22.04212 -20.39134 -19.71495 -19.04196 -18.45998 -17.43310 -17.17369 -16.33106 -16.12437 -15.70977 -15.68584 -14.90319 -14.74957 -14.70229 -14.36888 -14.27228 -14.06033 -13.78482 -13.37038 -13.20649 -12.88621 -12.81009 -12.62829 -12.31535 -12.01087 -11.91992 -11.76545 -11.36734 -11.24232 -11.18593 -10.85533 -10.79102 -10.47337 -10.29446 -10.07246 -10.00613 -9.88057 -9.77223 -9.59051 -9.55803 -9.27660 -8.93177 -8.38719 -6.93257 -5.74760 -3.03072 0.32951 0.98959 1.39299 2.46793 2.58886 2.92423 3.44553 3.50591 3.52381 3.95726 3.97739 4.23157 4.59648 4.60659 4.67315 4.78747 4.81233 4.89368 4.96957 5.07295 5.09902 5.22323 5.31548 5.38148 5.48464 5.60367 5.62423 5.68197 5.69722 5.78264 5.82493 5.86205 6.00545 6.21711 6.35819 6.40266 6.56204 6.67111 6.78932 7.14429 7.32637 7.38561 7.45945 7.72612 8.13309 8.43497 9.55845 10.12230 10.49110 11.47620 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018541 B = 0.002312 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.797709 B =12109.384979 C =12802.870137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.182 3.818 3 H 0.060 0.940 4 N -0.718 5.718 5 C -0.237 4.237 6 H 0.071 0.929 7 C -0.013 4.013 8 N -0.930 5.930 9 Si 0.905 3.095 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C 0.078 3.922 14 H 0.054 0.946 15 C 0.085 3.915 16 N -0.612 5.612 17 C 0.514 3.486 18 O -0.541 6.541 19 C -0.134 4.134 20 C -0.028 4.028 21 C -0.210 4.210 22 C 0.029 3.971 23 N -0.471 5.471 24 C 0.011 3.989 25 S 0.124 5.876 26 C 0.070 3.930 27 C 0.048 3.952 28 O -0.359 6.359 29 H 0.056 0.944 30 H 0.032 0.968 31 H 0.053 0.947 32 H 0.389 0.611 33 H 0.254 0.746 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.176 0.824 41 H 0.198 0.802 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.102 0.898 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.281 -5.728 -22.624 24.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.071 3.929 3 H 0.078 0.922 4 N -0.360 5.360 5 C -0.369 4.369 6 H 0.089 0.911 7 C -0.209 4.209 8 N -0.579 5.579 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.220 1.220 13 C 0.019 3.981 14 H 0.072 0.928 15 C -0.037 4.037 16 N -0.345 5.345 17 C 0.302 3.698 18 O -0.419 6.419 19 C -0.175 4.175 20 C -0.068 4.068 21 C -0.331 4.331 22 C -0.121 4.121 23 N -0.184 5.184 24 C -0.286 4.286 25 S 0.376 5.624 26 C -0.053 4.053 27 C -0.030 4.030 28 O -0.277 6.277 29 H 0.075 0.925 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.224 0.776 33 H 0.063 0.937 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.106 0.894 40 H 0.193 0.807 41 H 0.215 0.785 42 H 0.101 0.899 43 H 0.106 0.894 44 H 0.120 0.880 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.016 -5.566 -22.088 23.834 hybrid contribution -0.366 0.500 0.372 0.723 sum 6.650 -5.066 -21.716 23.269 Atomic orbital electron populations 1.22325 0.98448 1.01601 0.99569 1.20262 0.92846 0.94625 0.85131 0.92235 1.42416 1.77669 1.10943 1.04986 1.19287 1.36372 0.93839 0.87367 0.91134 1.24721 1.02258 0.95935 0.97967 1.69677 1.50926 1.08597 1.28687 0.86152 0.77244 0.78822 0.84179 1.20585 1.21969 1.21963 1.22918 0.91607 0.84102 0.99487 0.92788 1.22459 0.94907 0.96687 0.89615 1.48250 1.36473 1.19125 1.30695 1.20498 0.79335 0.87144 0.82852 1.90711 1.55052 1.23087 1.73024 1.21708 0.99825 0.99659 0.96319 1.19794 0.98348 0.96109 0.92564 1.26080 1.02206 1.04209 1.00613 1.21809 1.02173 0.99310 0.88836 1.66331 1.08982 1.06357 1.36686 1.28383 1.00032 1.03847 0.96340 1.84218 1.34390 1.31081 1.12676 1.22497 0.94383 0.85400 1.03048 1.22877 0.93248 0.97493 0.89429 1.88114 1.70642 1.27373 1.41582 0.92470 0.94887 0.92814 0.77636 0.93652 0.88548 0.88298 0.88702 0.88597 0.88644 0.89428 0.80702 0.78533 0.89908 0.89397 0.87953 0.93308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 9.29 37.16 0.35 -2.58 16 2 C 0.18 3.57 2.80 -67.94 -0.19 3.38 16 3 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 4 N -0.72 -17.48 4.24 -53.43 -0.23 -17.71 16 5 C -0.24 -6.46 9.93 -15.06 -0.15 -6.61 16 6 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -27.78 13.06 55.49 0.72 -27.05 16 9 Si 0.90 22.35 29.55 -169.99 -5.02 17.32 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 12 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 13 C 0.08 1.30 2.57 -26.58 -0.07 1.23 16 14 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 15 C 0.09 1.46 5.82 -3.53 -0.02 1.44 16 16 N -0.61 -8.48 3.02 -172.28 -0.52 -9.00 16 17 C 0.51 6.91 7.71 -10.99 -0.08 6.82 16 18 O -0.54 -9.27 15.45 5.56 0.09 -9.18 16 19 C -0.13 -1.19 4.06 -27.89 -0.11 -1.31 16 20 C -0.03 -0.25 5.04 -27.89 -0.14 -0.39 16 21 C -0.21 -1.73 5.85 -35.92 -0.21 -1.94 16 22 C 0.03 0.25 11.25 -19.19 -0.22 0.04 16 23 N -0.47 -4.49 10.54 -15.75 -0.17 -4.66 16 24 C 0.01 0.08 12.23 51.59 0.63 0.71 16 25 S 0.12 0.89 23.22 -107.50 -2.50 -1.61 16 26 C 0.07 0.76 6.54 -3.54 -0.02 0.73 16 27 C 0.05 0.55 6.98 37.31 0.26 0.81 16 28 O -0.36 -5.86 9.24 -35.23 -0.33 -6.18 16 29 H 0.06 1.10 7.56 -51.93 -0.39 0.71 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.39 10.22 7.07 -40.82 -0.29 9.93 16 33 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.10 1.76 7.08 -51.93 -0.37 1.39 16 35 H 0.10 2.03 6.92 -51.93 -0.36 1.67 16 36 H 0.09 0.74 8.01 -51.93 -0.42 0.33 16 37 H 0.10 0.68 7.66 -51.92 -0.40 0.28 16 38 H 0.10 0.86 8.10 -51.93 -0.42 0.44 16 39 H 0.09 0.86 8.10 -51.93 -0.42 0.44 16 40 H 0.18 1.22 8.06 -52.48 -0.42 0.80 16 41 H 0.20 0.79 8.06 -52.49 -0.42 0.37 16 42 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.09 0.64 6.06 -51.93 -0.31 0.33 16 44 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 45 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 380.98 15.07 5.74 5.74 Total: -1.00 -33.38 380.98 -9.01 -42.39 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -6.73 Total: 8.06 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -0.08 Total: 1.88 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: -0.19 Total: -58.42 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -0.24 Total: -15.37 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Atomic # 16 Polarization: 0.89 SS G_CDS: -2.50 Total: -1.61 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.38 -9.01 -42.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485641945.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.296 kcal (2) G-P(sol) polarization free energy of solvation -33.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds