Wall clock time and date at job start Sat Apr 11 2020 05:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 5 5 C 1.36940 * 120.00565 * 275.00309 * 4 2 1 6 6 H 1.08004 * 119.99402 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00150 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00111 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99847 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.47050 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47205 * 119.99454 * 9 7 5 12 12 H 1.48500 * 109.46799 * 240.00306 * 9 7 5 13 13 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 14 14 H 1.09005 * 109.51319 * 65.10012 * 13 2 1 15 15 C 1.53299 * 109.51743 * 185.25379 * 13 2 1 16 16 N 1.47147 * 108.38544 * 172.22967 * 15 13 2 17 17 C 1.34779 * 120.98424 * 129.44557 * 16 15 13 18 18 O 1.21279 * 119.99772 * 0.02562 * 17 16 15 19 19 C 1.50696 * 120.00009 * 180.02562 * 17 16 15 20 20 C 1.52998 * 109.47384 * 179.97438 * 19 17 16 21 21 C 1.50696 * 109.47725 * 180.02562 * 20 19 17 22 22 C 1.33634 * 126.04029 * 89.71424 * 21 20 19 23 23 N 1.31780 * 114.50045 * 179.79714 * 22 21 20 24 24 C 1.29030 * 117.12764 * 0.51253 * 23 22 21 25 25 S 1.70979 * 110.16237 * 359.72162 * 24 23 22 26 26 C 1.47152 * 118.03435 * 309.46231 * 16 15 13 27 27 C 1.53287 * 108.38588 * 50.53791 * 26 16 15 28 28 O 1.42959 * 109.51491 * 305.00226 * 13 2 1 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 32 32 H 0.97006 * 119.99921 * 94.99902 * 4 2 1 33 33 H 0.96997 * 119.99796 * 179.97438 * 8 7 5 34 34 H 1.09004 * 109.68136 * 291.95232 * 15 13 2 35 35 H 1.09004 * 109.67890 * 52.50364 * 15 13 2 36 36 H 1.08996 * 109.47552 * 300.00410 * 19 17 16 37 37 H 1.09008 * 109.47180 * 60.00149 * 19 17 16 38 38 H 1.09005 * 109.46657 * 300.00425 * 20 19 17 39 39 H 1.08999 * 109.47065 * 59.99898 * 20 19 17 40 40 H 1.08004 * 122.75117 * 359.97255 * 22 21 20 41 41 H 1.07990 * 124.92083 * 179.75573 * 24 23 22 42 42 H 1.09007 * 109.68189 * 290.81370 * 26 16 15 43 43 H 1.09000 * 109.71519 * 170.28275 * 26 16 15 44 44 H 1.09004 * 109.51892 * 187.77227 * 27 26 16 45 45 H 1.09004 * 109.55629 * 67.65024 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0074 2.3758 6 1 1.8926 1.0406 2.4241 7 6 2.6113 -0.6619 3.5094 8 7 2.9234 -1.9392 3.4505 9 14 2.7890 0.2698 5.1186 10 1 2.3752 1.6824 4.9211 11 1 1.9278 -0.3587 6.1522 12 1 4.2058 0.2269 5.5615 13 6 2.0400 -0.7212 -1.2491 14 1 1.7536 -0.1579 -2.1373 15 6 3.5673 -0.8374 -1.1857 16 7 4.0142 -1.6931 -2.2962 17 6 4.9979 -1.2945 -3.1269 18 8 5.5291 -0.2164 -2.9643 19 6 5.4378 -2.1884 -4.2575 20 6 6.5589 -1.5041 -5.0422 21 6 6.9984 -2.3977 -6.1733 22 6 6.4907 -2.4087 -7.4094 23 7 7.0499 -3.2825 -8.2220 24 6 7.9942 -4.0162 -7.7374 25 16 8.2672 -3.6179 -6.0972 26 6 3.3550 -2.9967 -2.4734 27 6 1.8382 -2.7755 -2.4741 28 8 1.4706 -2.0311 -1.3103 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 2.2490 -1.6317 1.1527 33 1 3.2468 -2.3964 4.2425 34 1 4.0150 0.1518 -1.2814 35 1 3.8623 -1.2842 -0.2362 36 1 5.8010 -3.1333 -3.8535 37 1 4.5936 -2.3775 -4.9207 38 1 6.1951 -0.5593 -5.4463 39 1 7.4031 -1.3146 -4.3793 40 1 5.6897 -1.7532 -7.7179 41 1 8.5343 -4.7720 -8.2881 42 1 3.6288 -3.6610 -1.6536 43 1 3.6621 -3.4382 -3.4215 44 1 1.3295 -3.7395 -2.4654 45 1 1.5509 -2.2204 -3.3671 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485641945.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:06 Heat of formation + Delta-G solvation = -41.790519 kcal Electronic energy + Delta-G solvation = -27186.493233 eV Core-core repulsion = 23330.524146 eV Total energy + Delta-G solvation = -3855.969088 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.49469 -40.56076 -39.65369 -37.09932 -35.76485 -35.26428 -34.14581 -31.77546 -30.59464 -30.07964 -28.79221 -26.87256 -25.83570 -25.05862 -24.32971 -23.17442 -21.21180 -20.97081 -20.10803 -19.31731 -19.09116 -18.23306 -17.60182 -17.04362 -16.87792 -16.65680 -16.24913 -15.98651 -15.82175 -15.42074 -15.14618 -15.05638 -14.94435 -14.71561 -14.62150 -14.00470 -13.88217 -13.67640 -13.42729 -13.40546 -13.04002 -12.82509 -12.77303 -12.66847 -12.51159 -12.47281 -12.12640 -11.87023 -11.78049 -11.67796 -11.50912 -11.09685 -10.95098 -10.85095 -10.58779 -10.20058 -9.86938 -9.58505 -8.94868 -7.90419 -5.17288 -0.24008 0.43553 0.83179 1.47662 1.48002 1.54493 1.57573 1.79659 1.93653 2.57655 2.82623 3.31934 3.43980 3.54978 3.71173 3.88080 3.95103 3.98057 3.99478 4.01071 4.17199 4.20800 4.31615 4.35905 4.40221 4.48097 4.52613 4.60001 4.64690 4.82006 4.84322 4.87727 4.95531 5.02663 5.04941 5.11535 5.21898 5.23363 5.34050 5.54482 5.62434 6.28348 6.33192 6.34867 6.75773 7.06996 7.38643 8.14283 8.39408 9.33022 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018541 B = 0.002312 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.797709 B =12109.384979 C =12802.870137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.171 3.829 3 H 0.058 0.942 4 N -0.726 5.726 5 C -0.232 4.232 6 H 0.075 0.925 7 C -0.076 4.076 8 N -0.967 5.967 9 Si 0.967 3.033 10 H -0.267 1.267 11 H -0.295 1.295 12 H -0.297 1.297 13 C 0.094 3.906 14 H 0.077 0.923 15 C 0.094 3.906 16 N -0.613 5.613 17 C 0.510 3.490 18 O -0.585 6.585 19 C -0.122 4.122 20 C -0.021 4.021 21 C -0.220 4.220 22 C 0.025 3.975 23 N -0.502 5.502 24 C 0.017 3.983 25 S 0.139 5.861 26 C 0.069 3.931 27 C 0.041 3.959 28 O -0.385 6.385 29 H 0.046 0.954 30 H 0.067 0.933 31 H 0.036 0.964 32 H 0.377 0.623 33 H 0.248 0.752 34 H 0.078 0.922 35 H 0.057 0.943 36 H 0.112 0.888 37 H 0.126 0.874 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.186 0.814 41 H 0.226 0.774 42 H 0.071 0.929 43 H 0.133 0.867 44 H 0.127 0.873 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.906 -6.419 -24.943 26.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.062 3.938 3 H 0.076 0.924 4 N -0.367 5.367 5 C -0.365 4.365 6 H 0.093 0.907 7 C -0.268 4.268 8 N -0.618 5.618 9 Si 0.797 3.203 10 H -0.191 1.191 11 H -0.223 1.223 12 H -0.224 1.224 13 C 0.035 3.965 14 H 0.095 0.905 15 C -0.029 4.029 16 N -0.346 5.346 17 C 0.300 3.700 18 O -0.465 6.465 19 C -0.162 4.162 20 C -0.062 4.062 21 C -0.341 4.341 22 C -0.125 4.125 23 N -0.216 5.216 24 C -0.280 4.280 25 S 0.391 5.609 26 C -0.053 4.053 27 C -0.036 4.036 28 O -0.304 6.304 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.056 0.944 32 H 0.209 0.791 33 H 0.057 0.943 34 H 0.096 0.904 35 H 0.076 0.924 36 H 0.130 0.870 37 H 0.144 0.856 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.203 0.797 41 H 0.242 0.758 42 H 0.089 0.911 43 H 0.151 0.849 44 H 0.145 0.855 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.613 -6.248 -24.451 26.089 hybrid contribution -0.218 0.692 0.971 1.212 sum 6.395 -5.555 -23.480 24.961 Atomic orbital electron populations 1.22142 0.96948 1.01142 1.00428 1.20514 0.93757 0.94587 0.84894 0.92432 1.42519 1.77967 1.10430 1.05780 1.19651 1.34364 0.94082 0.88355 0.90710 1.25468 1.03355 0.96845 1.01155 1.69827 1.52852 1.10063 1.29074 0.85162 0.76579 0.78264 0.80324 1.19141 1.22278 1.22445 1.22579 0.90667 0.84847 0.98424 0.90527 1.22018 0.95583 0.96012 0.89289 1.48331 1.36864 1.19791 1.29655 1.21346 0.78264 0.87089 0.83311 1.90691 1.56314 1.25298 1.74246 1.21721 1.00818 0.98890 0.94794 1.19646 0.97820 0.96210 0.92490 1.25948 1.03057 1.04828 1.00308 1.22023 1.02412 0.99275 0.88815 1.66387 1.10260 1.07455 1.37471 1.28912 0.99101 1.03441 0.96506 1.84201 1.33733 1.30362 1.12572 1.22722 0.93944 0.83700 1.04938 1.23226 0.93728 0.98279 0.88405 1.88068 1.70885 1.27209 1.44239 0.93508 0.91457 0.94439 0.79057 0.94289 0.90395 0.92447 0.86962 0.85642 0.89154 0.90935 0.79677 0.75781 0.91075 0.84943 0.85499 0.91259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.24 9.29 71.98 0.67 -4.57 16 2 C 0.17 6.73 2.80 44.99 0.13 6.86 16 3 H 0.06 2.27 8.08 -2.39 -0.02 2.25 16 4 N -0.73 -36.29 4.24 -322.95 -1.37 -37.66 16 5 C -0.23 -12.87 9.93 84.03 0.83 -12.04 16 6 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 7 C -0.08 -4.39 5.50 84.86 0.47 -3.93 16 8 N -0.97 -59.50 13.06 21.65 0.28 -59.21 16 9 Si 0.97 46.82 29.55 68.60 2.03 48.85 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 12 H -0.30 -14.47 7.11 99.48 0.71 -13.77 16 13 C 0.09 3.07 2.57 30.69 0.08 3.15 16 14 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 15 C 0.09 3.33 5.82 86.36 0.50 3.83 16 16 N -0.61 -16.46 3.02 -817.35 -2.47 -18.93 16 17 C 0.51 13.20 7.71 87.66 0.68 13.88 16 18 O -0.59 -20.32 15.45 -3.03 -0.05 -20.37 16 19 C -0.12 -1.86 4.06 29.85 0.12 -1.74 16 20 C -0.02 -0.35 5.04 29.85 0.15 -0.20 16 21 C -0.22 -3.22 5.85 24.64 0.14 -3.08 16 22 C 0.03 0.39 11.25 83.66 0.94 1.33 16 23 N -0.50 -8.56 10.54 -203.75 -2.15 -10.70 16 24 C 0.02 0.21 12.23 130.65 1.60 1.81 16 25 S 0.14 1.70 23.22 -56.49 -1.31 0.38 16 26 C 0.07 1.32 6.54 86.35 0.56 1.89 16 27 C 0.04 0.81 6.98 72.08 0.50 1.32 16 28 O -0.39 -12.10 9.24 -148.98 -1.38 -13.48 16 29 H 0.05 1.76 7.56 -2.39 -0.02 1.74 16 30 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.38 20.55 7.07 -92.70 -0.66 19.89 16 33 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 34 H 0.08 2.98 7.08 -2.38 -0.02 2.96 16 35 H 0.06 2.50 6.92 -2.39 -0.02 2.48 16 36 H 0.11 1.38 8.01 -2.39 -0.02 1.36 16 37 H 0.13 1.23 7.66 -2.38 -0.02 1.21 16 38 H 0.09 1.56 8.10 -2.38 -0.02 1.54 16 39 H 0.07 1.40 8.10 -2.39 -0.02 1.38 16 40 H 0.19 2.23 8.06 -2.91 -0.02 2.20 16 41 H 0.23 1.14 8.06 -2.92 -0.02 1.12 16 42 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 43 H 0.13 1.35 6.06 -2.39 -0.01 1.33 16 44 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 Total: -1.00 -75.20 380.98 1.31 -73.89 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: 0.35 Total: 28.73 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: 7.38 Total: 8.51 kcal Atomic # 7 Polarization: -120.80 SS G_CDS: -5.70 Total: -126.51 kcal Atomic # 8 Polarization: -32.42 SS G_CDS: -1.42 Total: -33.85 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -1.31 Total: 0.38 kcal Total: -75.20 1.31 -73.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485641945.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.096 kcal (2) G-P(sol) polarization free energy of solvation -75.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds