Wall clock time and date at job start Sat Apr 11 2020 05:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47346 * 2 1 4 4 N 1.46500 * 109.47332 * 239.99633 * 2 1 3 5 5 C 1.36939 * 119.99605 * 85.00196 * 4 2 1 6 6 H 1.07994 * 120.00514 * 0.02562 * 5 4 2 7 7 C 1.38817 * 119.99553 * 180.02562 * 5 4 2 8 8 N 1.31620 * 120.00221 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99874 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47126 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47447 * 119.99736 * 9 7 5 12 12 H 1.48495 * 109.47334 * 239.99863 * 9 7 5 13 13 C 1.52999 * 109.47135 * 119.99659 * 2 1 3 14 14 H 1.09000 * 109.51477 * 174.90150 * 13 2 1 15 15 C 1.53292 * 109.51227 * 295.00234 * 13 2 1 16 16 N 1.47156 * 108.38567 * 172.27608 * 15 13 2 17 17 C 1.34770 * 120.98466 * 129.19284 * 16 15 13 18 18 O 1.21285 * 119.99807 * 359.97438 * 17 16 15 19 19 C 1.50703 * 120.00440 * 180.02562 * 17 16 15 20 20 C 1.52995 * 109.47485 * 179.97438 * 19 17 16 21 21 C 1.50693 * 109.47105 * 179.97438 * 20 19 17 22 22 C 1.33644 * 126.03698 * 89.71637 * 21 20 19 23 23 N 1.31788 * 114.49971 * 179.78583 * 22 21 20 24 24 C 1.29020 * 117.12329 * 0.52133 * 23 22 21 25 25 S 1.70975 * 110.16889 * 359.71483 * 24 23 22 26 26 C 1.47151 * 118.03191 * 309.46391 * 16 15 13 27 27 C 1.53295 * 108.38744 * 50.53693 * 26 16 15 28 28 O 1.42959 * 109.22034 * 307.69425 * 27 26 16 29 29 H 1.08996 * 109.47241 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47298 * 300.00736 * 1 2 3 31 31 H 1.09006 * 109.46856 * 60.00284 * 1 2 3 32 32 H 0.96997 * 120.00179 * 265.00405 * 4 2 1 33 33 H 0.96999 * 120.00184 * 180.02562 * 8 7 5 34 34 H 1.08995 * 109.68463 * 52.55255 * 15 13 2 35 35 H 1.09002 * 109.71383 * 292.01569 * 15 13 2 36 36 H 1.09002 * 109.46337 * 299.99691 * 19 17 16 37 37 H 1.08996 * 109.47035 * 59.99161 * 19 17 16 38 38 H 1.09006 * 109.47022 * 299.99808 * 20 19 17 39 39 H 1.08999 * 109.47229 * 59.99212 * 20 19 17 40 40 H 1.07997 * 122.74931 * 359.97286 * 22 21 20 41 41 H 1.08004 * 124.91532 * 179.74493 * 24 23 22 42 42 H 1.09006 * 109.68007 * 170.26184 * 26 16 15 43 43 H 1.09000 * 109.68083 * 290.80932 * 26 16 15 44 44 H 1.08999 * 109.51139 * 187.77108 * 27 26 16 45 45 H 1.09002 * 109.55366 * 67.64120 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1492 -0.0075 -2.3757 6 1 1.8927 1.0404 -2.4242 7 6 2.6114 -0.6621 -3.5092 8 7 2.9245 -1.9392 -3.4500 9 14 2.7892 0.2695 -5.1185 10 1 2.3744 1.6817 -4.9214 11 1 4.2060 0.2266 -5.5615 12 1 1.9282 -0.3591 -6.1522 13 6 2.0400 -0.7212 1.2493 14 1 3.1262 -0.8013 1.2055 15 6 1.6349 0.0698 2.4983 16 7 1.9708 -0.7328 3.6851 17 6 2.6825 -0.2052 4.7007 18 8 3.0565 0.9472 4.6447 19 6 3.0146 -1.0473 5.9056 20 6 3.8236 -0.2150 6.9024 21 6 4.1551 -1.0570 8.1073 22 6 5.2413 -1.8208 8.2580 23 7 5.3048 -2.4597 9.4089 24 6 4.3276 -2.2855 10.2331 25 16 3.1754 -1.2144 9.5634 26 6 1.5119 -2.1302 3.7275 27 6 1.9230 -2.8141 2.4186 28 8 1.4668 -2.0293 1.3141 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 2.2490 -1.6318 -1.1525 33 1 3.2478 -2.3965 -4.2420 34 1 0.5626 0.2641 2.4781 35 1 2.1785 1.0141 2.5279 36 1 2.0922 -1.3852 6.3780 37 1 3.6010 -1.9117 5.5941 38 1 4.7460 0.1225 6.4296 39 1 3.2375 0.6496 7.2138 40 1 6.0060 -1.9051 7.5000 41 1 4.2491 -2.7487 11.2056 42 1 1.9745 -2.6431 4.5708 43 1 0.4272 -2.1574 3.8310 44 1 1.4747 -3.8064 2.3699 45 1 3.0087 -2.9026 2.3785 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485641946.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:09 Heat of formation + Delta-G solvation = -19.122121 kcal Electronic energy + Delta-G solvation = -26912.194350 eV Core-core repulsion = 23057.208238 eV Total energy + Delta-G solvation = -3854.986112 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.55251 -39.97459 -38.54904 -35.56147 -34.63742 -34.55866 -32.51607 -30.53838 -29.79754 -28.48449 -27.42127 -26.09585 -24.78874 -23.63799 -23.48334 -22.06072 -20.44869 -19.70353 -19.20360 -18.52838 -17.50345 -17.12529 -16.45304 -16.21525 -15.88539 -15.63720 -15.17880 -14.80806 -14.66211 -14.43896 -14.40122 -14.19424 -13.88843 -13.34568 -13.20027 -12.98054 -12.88036 -12.69299 -12.47813 -12.14629 -12.09384 -11.95322 -11.36616 -11.28650 -11.14988 -10.86549 -10.74161 -10.56766 -10.30131 -10.11322 -10.04646 -9.87132 -9.85393 -9.67474 -9.63194 -9.33599 -8.90457 -8.54422 -6.93696 -5.73980 -3.02710 0.27354 0.92944 1.32894 2.41860 2.42565 2.74462 3.44573 3.50322 3.52463 3.91752 3.93585 4.12689 4.50303 4.56670 4.59189 4.70490 4.71364 4.84371 4.85911 4.99100 5.04837 5.13871 5.15771 5.30366 5.42182 5.55013 5.58932 5.62440 5.64413 5.68262 5.76481 5.78770 5.96641 5.97213 6.18207 6.31924 6.45044 6.64082 6.81280 7.14404 7.19692 7.28221 7.44648 7.72182 7.96130 8.44190 9.56182 10.13613 10.50152 11.48500 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025340 B = 0.001995 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.692172 B =14029.458241 C =14139.517079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.185 3.815 3 H 0.059 0.941 4 N -0.719 5.719 5 C -0.238 4.238 6 H 0.071 0.929 7 C -0.014 4.014 8 N -0.931 5.931 9 Si 0.906 3.094 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.292 1.292 13 C 0.076 3.924 14 H 0.063 0.937 15 C 0.082 3.918 16 N -0.613 5.613 17 C 0.515 3.485 18 O -0.540 6.540 19 C -0.135 4.135 20 C -0.028 4.028 21 C -0.211 4.211 22 C 0.032 3.968 23 N -0.470 5.470 24 C 0.014 3.986 25 S 0.120 5.880 26 C 0.071 3.929 27 C 0.045 3.955 28 O -0.358 6.358 29 H 0.056 0.944 30 H 0.034 0.966 31 H 0.052 0.948 32 H 0.389 0.611 33 H 0.254 0.746 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.177 0.823 41 H 0.198 0.802 42 H 0.090 0.910 43 H 0.079 0.921 44 H 0.104 0.896 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.848 -1.877 28.405 28.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.074 3.926 3 H 0.077 0.923 4 N -0.361 5.361 5 C -0.369 4.369 6 H 0.089 0.911 7 C -0.210 4.210 8 N -0.579 5.579 9 Si 0.737 3.263 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C 0.017 3.983 14 H 0.081 0.919 15 C -0.041 4.041 16 N -0.347 5.347 17 C 0.304 3.696 18 O -0.417 6.417 19 C -0.175 4.175 20 C -0.068 4.068 21 C -0.332 4.332 22 C -0.119 4.119 23 N -0.183 5.183 24 C -0.284 4.284 25 S 0.372 5.628 26 C -0.052 4.052 27 C -0.033 4.033 28 O -0.275 6.275 29 H 0.076 0.924 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.223 0.777 33 H 0.064 0.936 34 H 0.099 0.901 35 H 0.118 0.882 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.105 0.895 40 H 0.194 0.806 41 H 0.215 0.785 42 H 0.108 0.892 43 H 0.097 0.903 44 H 0.122 0.878 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.256 -1.174 28.647 28.759 hybrid contribution 0.954 -0.128 -1.240 1.569 sum -1.302 -1.302 27.407 27.469 Atomic orbital electron populations 1.22413 0.98653 1.01610 0.99545 1.20198 0.92829 0.94617 0.84964 0.92292 1.42359 1.77847 1.10958 1.04900 1.19297 1.36450 0.93877 0.87320 0.91094 1.24747 1.02236 0.95979 0.98044 1.69688 1.50866 1.08645 1.28696 0.86130 0.77260 0.78803 0.84080 1.20551 1.21931 1.21923 1.22977 0.97592 0.83018 0.94737 0.91876 1.22506 1.01979 0.95874 0.83724 1.48205 1.54360 1.12906 1.19202 1.20547 0.77472 0.87800 0.83814 1.90717 1.52945 1.18041 1.79990 1.21715 1.02173 0.99512 0.94141 1.19789 1.02016 0.95688 0.89293 1.26056 0.99441 1.06774 1.00967 1.21847 0.98651 0.96036 0.95368 1.66335 1.25838 1.23102 1.02975 1.28395 0.93588 1.02151 1.04256 1.84142 1.25723 1.42685 1.10263 1.22531 1.00893 0.81726 1.00052 1.22902 0.99551 0.95240 0.85599 1.88111 1.67496 1.25880 1.46063 0.92445 0.94692 0.92881 0.77694 0.93622 0.90102 0.88174 0.88697 0.88368 0.88540 0.89500 0.80604 0.78502 0.89191 0.90279 0.87825 0.92833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 9.06 37.16 0.34 -2.61 16 2 C 0.18 3.66 2.77 -67.93 -0.19 3.47 16 3 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 4 N -0.72 -18.14 5.10 -53.42 -0.27 -18.42 16 5 C -0.24 -6.62 9.93 -15.06 -0.15 -6.77 16 6 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 7 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 8 N -0.93 -28.30 13.06 55.49 0.72 -27.58 16 9 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 12 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 13 C 0.08 1.27 2.60 -26.58 -0.07 1.20 16 14 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 15 C 0.08 1.15 5.83 -3.53 -0.02 1.13 16 16 N -0.61 -7.24 3.02 -172.28 -0.52 -7.76 16 17 C 0.52 6.06 7.71 -10.99 -0.08 5.98 16 18 O -0.54 -8.28 15.45 5.55 0.09 -8.20 16 19 C -0.13 -1.03 4.06 -27.88 -0.11 -1.15 16 20 C -0.03 -0.22 5.04 -27.89 -0.14 -0.36 16 21 C -0.21 -1.59 5.85 -35.92 -0.21 -1.80 16 22 C 0.03 0.26 11.25 -19.18 -0.22 0.05 16 23 N -0.47 -4.31 10.54 -15.75 -0.17 -4.48 16 24 C 0.01 0.09 12.23 51.58 0.63 0.72 16 25 S 0.12 0.74 23.22 -107.50 -2.50 -1.75 16 26 C 0.07 0.65 6.54 -3.53 -0.02 0.62 16 27 C 0.05 0.52 6.98 37.31 0.26 0.78 16 28 O -0.36 -5.85 9.25 -35.23 -0.33 -6.18 16 29 H 0.06 1.10 7.56 -51.93 -0.39 0.71 16 30 H 0.03 0.52 6.42 -51.93 -0.33 0.19 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.39 10.60 7.59 -40.82 -0.31 10.29 16 33 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.08 1.09 6.28 -51.93 -0.33 0.76 16 35 H 0.10 1.50 7.08 -51.93 -0.37 1.13 16 36 H 0.09 0.58 8.02 -51.93 -0.42 0.16 16 37 H 0.10 0.63 7.65 -51.93 -0.40 0.23 16 38 H 0.10 0.81 8.10 -51.93 -0.42 0.39 16 39 H 0.09 0.73 8.10 -51.93 -0.42 0.31 16 40 H 0.18 1.21 8.06 -52.49 -0.42 0.79 16 41 H 0.20 0.68 8.06 -52.48 -0.42 0.26 16 42 H 0.09 0.55 6.05 -51.93 -0.31 0.24 16 43 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 379.75 15.07 5.72 5.72 Total: -1.00 -34.37 379.75 -8.98 -43.34 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -6.62 Total: 7.05 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -0.08 Total: 0.76 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: -0.23 Total: -58.23 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.24 Total: -14.37 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Atomic # 16 Polarization: 0.74 SS G_CDS: -2.50 Total: -1.75 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.37 -8.98 -43.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485641946.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.222 kcal (2) G-P(sol) polarization free energy of solvation -34.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds