Wall clock time and date at job start Sat Apr 11 2020 05:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47346 * 2 1 4 4 N 1.46500 * 109.47332 * 239.99633 * 2 1 3 5 5 C 1.36939 * 119.99605 * 85.00196 * 4 2 1 6 6 H 1.07994 * 120.00514 * 0.02562 * 5 4 2 7 7 C 1.38817 * 119.99553 * 180.02562 * 5 4 2 8 8 N 1.31620 * 120.00221 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99874 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47126 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47447 * 119.99736 * 9 7 5 12 12 H 1.48495 * 109.47334 * 239.99863 * 9 7 5 13 13 C 1.52999 * 109.47135 * 119.99659 * 2 1 3 14 14 H 1.09000 * 109.51477 * 174.90150 * 13 2 1 15 15 C 1.53292 * 109.51227 * 295.00234 * 13 2 1 16 16 N 1.47156 * 108.38567 * 172.27608 * 15 13 2 17 17 C 1.34770 * 120.98466 * 129.19284 * 16 15 13 18 18 O 1.21285 * 119.99807 * 359.97438 * 17 16 15 19 19 C 1.50703 * 120.00440 * 180.02562 * 17 16 15 20 20 C 1.52995 * 109.47485 * 179.97438 * 19 17 16 21 21 C 1.50693 * 109.47105 * 179.97438 * 20 19 17 22 22 C 1.33644 * 126.03698 * 89.71637 * 21 20 19 23 23 N 1.31788 * 114.49971 * 179.78583 * 22 21 20 24 24 C 1.29020 * 117.12329 * 0.52133 * 23 22 21 25 25 S 1.70975 * 110.16889 * 359.71483 * 24 23 22 26 26 C 1.47151 * 118.03191 * 309.46391 * 16 15 13 27 27 C 1.53295 * 108.38744 * 50.53693 * 26 16 15 28 28 O 1.42959 * 109.22034 * 307.69425 * 27 26 16 29 29 H 1.08996 * 109.47241 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47298 * 300.00736 * 1 2 3 31 31 H 1.09006 * 109.46856 * 60.00284 * 1 2 3 32 32 H 0.96997 * 120.00179 * 265.00405 * 4 2 1 33 33 H 0.96999 * 120.00184 * 180.02562 * 8 7 5 34 34 H 1.08995 * 109.68463 * 52.55255 * 15 13 2 35 35 H 1.09002 * 109.71383 * 292.01569 * 15 13 2 36 36 H 1.09002 * 109.46337 * 299.99691 * 19 17 16 37 37 H 1.08996 * 109.47035 * 59.99161 * 19 17 16 38 38 H 1.09006 * 109.47022 * 299.99808 * 20 19 17 39 39 H 1.08999 * 109.47229 * 59.99212 * 20 19 17 40 40 H 1.07997 * 122.74931 * 359.97286 * 22 21 20 41 41 H 1.08004 * 124.91532 * 179.74493 * 24 23 22 42 42 H 1.09006 * 109.68007 * 170.26184 * 26 16 15 43 43 H 1.09000 * 109.68083 * 290.80932 * 26 16 15 44 44 H 1.08999 * 109.51139 * 187.77108 * 27 26 16 45 45 H 1.09002 * 109.55366 * 67.64120 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1492 -0.0075 -2.3757 6 1 1.8927 1.0404 -2.4242 7 6 2.6114 -0.6621 -3.5092 8 7 2.9245 -1.9392 -3.4500 9 14 2.7892 0.2695 -5.1185 10 1 2.3744 1.6817 -4.9214 11 1 4.2060 0.2266 -5.5615 12 1 1.9282 -0.3591 -6.1522 13 6 2.0400 -0.7212 1.2493 14 1 3.1262 -0.8013 1.2055 15 6 1.6349 0.0698 2.4983 16 7 1.9708 -0.7328 3.6851 17 6 2.6825 -0.2052 4.7007 18 8 3.0565 0.9472 4.6447 19 6 3.0146 -1.0473 5.9056 20 6 3.8236 -0.2150 6.9024 21 6 4.1551 -1.0570 8.1073 22 6 5.2413 -1.8208 8.2580 23 7 5.3048 -2.4597 9.4089 24 6 4.3276 -2.2855 10.2331 25 16 3.1754 -1.2144 9.5634 26 6 1.5119 -2.1302 3.7275 27 6 1.9230 -2.8141 2.4186 28 8 1.4668 -2.0293 1.3141 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 2.2490 -1.6318 -1.1525 33 1 3.2478 -2.3965 -4.2420 34 1 0.5626 0.2641 2.4781 35 1 2.1785 1.0141 2.5279 36 1 2.0922 -1.3852 6.3780 37 1 3.6010 -1.9117 5.5941 38 1 4.7460 0.1225 6.4296 39 1 3.2375 0.6496 7.2138 40 1 6.0060 -1.9051 7.5000 41 1 4.2491 -2.7487 11.2056 42 1 1.9745 -2.6431 4.5708 43 1 0.4272 -2.1574 3.8310 44 1 1.4747 -3.8064 2.3699 45 1 3.0087 -2.9026 2.3785 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485641946.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:09 Heat of formation + Delta-G solvation = -43.037962 kcal Electronic energy + Delta-G solvation = -26913.231418 eV Core-core repulsion = 23057.208238 eV Total energy + Delta-G solvation = -3856.023181 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.52645 -40.56968 -39.67400 -37.12280 -35.73962 -35.28026 -34.30662 -31.97976 -30.53861 -29.95838 -28.51664 -26.92449 -26.24043 -24.97218 -24.34414 -23.22821 -21.18984 -20.98224 -20.10683 -19.30111 -19.08975 -18.20572 -17.64597 -17.01380 -16.95402 -16.62668 -16.39581 -16.05406 -15.79757 -15.50090 -15.18184 -15.12147 -14.98371 -14.74213 -14.44445 -14.01765 -13.96316 -13.73339 -13.49036 -13.42906 -13.07023 -12.88064 -12.82037 -12.65979 -12.44528 -12.36244 -12.13643 -11.87065 -11.83315 -11.64487 -11.55869 -11.17771 -10.94215 -10.86709 -10.58417 -10.19451 -9.86676 -9.58932 -9.00721 -7.92695 -5.21194 -0.24097 0.43766 0.82002 1.47224 1.47890 1.52832 1.57982 1.77892 1.92493 2.56400 2.80108 3.31085 3.41250 3.54214 3.60386 3.87304 3.93120 3.96520 4.00042 4.01864 4.13140 4.20399 4.33298 4.38567 4.39906 4.47435 4.48330 4.60520 4.61832 4.65497 4.82282 4.86485 4.95938 4.98185 5.02980 5.09886 5.21688 5.24519 5.30948 5.51939 5.62431 6.26295 6.28516 6.31629 6.76551 7.05226 7.35348 8.11129 8.35746 9.30985 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025340 B = 0.001995 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.692172 B =14029.458241 C =14139.517079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.175 3.825 3 H 0.057 0.943 4 N -0.732 5.732 5 C -0.237 4.237 6 H 0.077 0.923 7 C -0.079 4.079 8 N -0.969 5.969 9 Si 0.972 3.028 10 H -0.265 1.265 11 H -0.295 1.295 12 H -0.294 1.294 13 C 0.091 3.909 14 H 0.038 0.962 15 C 0.092 3.908 16 N -0.615 5.615 17 C 0.512 3.488 18 O -0.582 6.582 19 C -0.125 4.125 20 C -0.022 4.022 21 C -0.220 4.220 22 C 0.021 3.979 23 N -0.505 5.505 24 C 0.014 3.986 25 S 0.152 5.848 26 C 0.076 3.924 27 C 0.035 3.965 28 O -0.383 6.383 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.036 0.964 32 H 0.375 0.625 33 H 0.250 0.750 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.180 0.820 41 H 0.226 0.774 42 H 0.128 0.872 43 H 0.095 0.905 44 H 0.128 0.872 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.060 -2.086 30.684 30.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.066 3.934 3 H 0.075 0.925 4 N -0.373 5.373 5 C -0.369 4.369 6 H 0.095 0.905 7 C -0.271 4.271 8 N -0.620 5.620 9 Si 0.801 3.199 10 H -0.190 1.190 11 H -0.222 1.222 12 H -0.221 1.221 13 C 0.032 3.968 14 H 0.056 0.944 15 C -0.032 4.032 16 N -0.348 5.348 17 C 0.303 3.697 18 O -0.462 6.462 19 C -0.165 4.165 20 C -0.062 4.062 21 C -0.341 4.341 22 C -0.130 4.130 23 N -0.219 5.219 24 C -0.282 4.282 25 S 0.405 5.595 26 C -0.046 4.046 27 C -0.042 4.042 28 O -0.302 6.302 29 H 0.065 0.935 30 H 0.089 0.911 31 H 0.055 0.945 32 H 0.207 0.793 33 H 0.058 0.942 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.139 0.861 37 H 0.135 0.865 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.197 0.803 41 H 0.242 0.758 42 H 0.146 0.854 43 H 0.113 0.887 44 H 0.145 0.855 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.501 -1.367 30.976 31.203 hybrid contribution 1.308 -0.078 -1.810 2.235 sum -2.193 -1.445 29.166 29.284 Atomic orbital electron populations 1.22205 0.96858 1.01179 1.00476 1.20441 0.93928 0.94473 0.84571 0.92509 1.42534 1.78279 1.10457 1.05994 1.19688 1.34729 0.94197 0.88306 0.90516 1.25562 1.03121 0.96925 1.01456 1.69844 1.52695 1.10227 1.29248 0.85085 0.76707 0.78216 0.79845 1.18982 1.22199 1.22150 1.22536 0.95851 0.83905 0.94521 0.94391 1.22195 1.02209 0.95113 0.83636 1.48308 1.54346 1.13850 1.18342 1.21272 0.76318 0.87636 0.84524 1.90702 1.54423 1.20144 1.80914 1.21732 1.03546 0.99030 0.92153 1.19659 1.01429 0.95598 0.89541 1.25980 0.99880 1.06776 1.01505 1.21993 0.99107 0.96310 0.95561 1.66374 1.27269 1.24471 1.03746 1.28921 0.92956 1.01525 1.04837 1.84030 1.24656 1.41849 1.09003 1.22704 1.02138 0.79979 0.99774 1.23230 0.99501 0.95960 0.85507 1.88057 1.67733 1.25787 1.48629 0.93472 0.91101 0.94509 0.79297 0.94155 0.89030 0.89536 0.86111 0.86518 0.89739 0.90207 0.80256 0.75817 0.85394 0.88724 0.85466 0.93497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.27 9.06 71.98 0.65 -4.61 16 2 C 0.17 6.99 2.77 44.99 0.12 7.12 16 3 H 0.06 2.28 8.08 -2.38 -0.02 2.26 16 4 N -0.73 -37.86 5.10 -322.94 -1.65 -39.51 16 5 C -0.24 -13.38 9.93 84.03 0.83 -12.55 16 6 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 7 C -0.08 -4.59 5.50 84.86 0.47 -4.13 16 8 N -0.97 -60.45 13.06 21.65 0.28 -60.17 16 9 Si 0.97 46.93 29.55 68.60 2.03 48.95 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 11 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 12 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 13 C 0.09 3.07 2.60 30.69 0.08 3.15 16 14 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 15 C 0.09 2.50 5.83 86.35 0.50 3.00 16 16 N -0.62 -13.34 3.02 -817.35 -2.47 -15.81 16 17 C 0.51 11.21 7.71 87.66 0.68 11.89 16 18 O -0.58 -17.69 15.45 -3.05 -0.05 -17.74 16 19 C -0.12 -1.57 4.06 29.85 0.12 -1.45 16 20 C -0.02 -0.31 5.04 29.84 0.15 -0.16 16 21 C -0.22 -2.92 5.85 24.64 0.14 -2.77 16 22 C 0.02 0.32 11.25 83.66 0.94 1.26 16 23 N -0.50 -8.52 10.54 -203.74 -2.15 -10.67 16 24 C 0.01 0.16 12.23 130.66 1.60 1.76 16 25 S 0.15 1.51 23.22 -56.49 -1.31 0.19 16 26 C 0.08 1.13 6.54 86.35 0.56 1.70 16 27 C 0.04 0.75 6.98 72.08 0.50 1.25 16 28 O -0.38 -12.35 9.25 -148.98 -1.38 -13.73 16 29 H 0.05 1.77 7.56 -2.39 -0.02 1.75 16 30 H 0.07 2.00 6.42 -2.39 -0.02 1.98 16 31 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 32 H 0.38 21.16 7.59 -92.71 -0.70 20.46 16 33 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 34 H 0.09 2.28 6.28 -2.39 -0.01 2.27 16 35 H 0.09 2.60 7.08 -2.39 -0.02 2.58 16 36 H 0.12 0.95 8.02 -2.39 -0.02 0.93 16 37 H 0.12 1.10 7.65 -2.39 -0.02 1.08 16 38 H 0.08 1.40 8.10 -2.38 -0.02 1.38 16 39 H 0.08 1.25 8.10 -2.39 -0.02 1.23 16 40 H 0.18 2.37 8.06 -2.91 -0.02 2.34 16 41 H 0.23 0.91 8.06 -2.91 -0.02 0.89 16 42 H 0.13 0.96 6.05 -2.38 -0.01 0.95 16 43 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.05 1.05 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -76.69 379.75 0.97 -75.71 By element: Atomic # 1 Polarization: 27.01 SS G_CDS: 0.30 Total: 27.32 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: 7.36 Total: 5.45 kcal Atomic # 7 Polarization: -120.18 SS G_CDS: -5.98 Total: -126.16 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -1.42 Total: -31.47 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.95 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -1.31 Total: 0.19 kcal Total: -76.69 0.97 -75.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485641946.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.675 kcal (2) G-P(sol) polarization free energy of solvation -76.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds