Wall clock time and date at job start Sat Apr 11 2020 05:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 5 5 C 1.36939 * 119.99555 * 274.99680 * 4 2 1 6 6 H 1.07999 * 120.00498 * 0.02562 * 5 4 2 7 7 C 1.38813 * 119.99885 * 179.97438 * 5 4 2 8 8 N 1.31623 * 120.00026 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00060 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46953 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46786 * 120.00380 * 9 7 5 12 12 H 1.48498 * 109.47226 * 239.99908 * 9 7 5 13 13 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 14 14 H 1.09003 * 109.50747 * 185.10071 * 13 2 1 15 15 C 1.53299 * 109.51355 * 65.00544 * 13 2 1 16 16 N 1.47154 * 108.38601 * 187.77387 * 15 13 2 17 17 C 1.34772 * 120.97964 * 230.55832 * 16 15 13 18 18 O 1.21283 * 120.00254 * 359.97438 * 17 16 15 19 19 C 1.50700 * 120.00155 * 179.97438 * 17 16 15 20 20 C 1.52994 * 109.47322 * 179.97438 * 19 17 16 21 21 C 1.50701 * 109.46988 * 179.97438 * 20 19 17 22 22 C 1.33638 * 126.04170 * 90.00299 * 21 20 19 23 23 N 1.31776 * 114.50248 * 179.97438 * 22 21 20 24 24 C 1.29021 * 117.12895 * 359.97438 * 23 22 21 25 25 S 1.70982 * 110.16568 * 359.72818 * 24 23 22 26 26 C 1.47153 * 118.03767 * 50.52811 * 16 15 13 27 27 C 1.53299 * 108.38347 * 309.46531 * 26 16 15 28 28 O 1.42963 * 109.22127 * 52.30803 * 27 26 16 29 29 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 30 30 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 0.96998 * 120.00364 * 94.99433 * 4 2 1 33 33 H 0.96993 * 120.00204 * 179.97438 * 8 7 5 34 34 H 1.09008 * 109.67291 * 307.48932 * 15 13 2 35 35 H 1.08992 * 109.68290 * 68.00783 * 15 13 2 36 36 H 1.09006 * 109.46767 * 299.99483 * 19 17 16 37 37 H 1.09000 * 109.47429 * 59.98684 * 19 17 16 38 38 H 1.09006 * 109.47140 * 299.99699 * 20 19 17 39 39 H 1.08999 * 109.47147 * 59.99534 * 20 19 17 40 40 H 1.08003 * 122.74801 * 359.97438 * 22 21 20 41 41 H 1.08002 * 124.92248 * 180.02562 * 24 23 22 42 42 H 1.08996 * 109.68428 * 69.18980 * 26 16 15 43 43 H 1.08995 * 109.68154 * 189.74886 * 26 16 15 44 44 H 1.08998 * 109.50970 * 172.22605 * 27 26 16 45 45 H 1.09001 * 109.51741 * 292.32937 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1493 -0.0075 2.3757 6 1 1.8920 1.0403 2.4244 7 6 2.6115 -0.6620 3.5092 8 7 2.9245 -1.9391 3.4501 9 14 2.7906 0.2701 5.1181 10 1 2.3767 1.6824 4.9207 11 1 1.9295 -0.3578 6.1523 12 1 4.2075 0.2261 5.5605 13 6 2.0399 -0.7213 -1.2493 14 1 3.1261 -0.8015 -1.2054 15 6 1.6349 0.0697 -2.4984 16 7 1.9696 -0.7334 -3.6851 17 6 2.6771 -0.2051 -4.7034 18 8 3.0474 0.9485 -4.6502 19 6 3.0080 -1.0479 -5.9080 20 6 3.8109 -0.2143 -6.9087 21 6 4.1423 -1.0573 -8.1131 22 6 3.3969 -1.1813 -9.2153 23 7 3.9051 -1.9802 -10.1317 24 6 5.0381 -2.5367 -9.8643 25 16 5.5858 -2.0463 -8.3206 26 6 1.5097 -2.1306 -3.7270 27 6 1.9209 -2.8144 -2.4180 28 8 1.4658 -2.0290 -1.3135 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 2.2491 -1.6318 1.1526 33 1 3.2478 -2.3964 4.2420 34 1 0.5627 0.2647 -2.4776 35 1 2.1793 1.0135 -2.5277 36 1 3.5979 -1.9103 -5.5972 37 1 2.0853 -1.3891 -6.3774 38 1 3.2207 0.6479 -7.2195 39 1 4.7336 0.1271 -6.4395 40 1 2.4550 -0.6688 -9.3443 41 1 5.5665 -3.2106 -10.5224 42 1 0.4249 -2.1571 -3.8299 43 1 1.9716 -2.6441 -4.5701 44 1 1.4720 -3.8064 -2.3688 45 1 3.0066 -2.9038 -2.3793 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485641947.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:37 Heat of formation + Delta-G solvation = -19.163736 kcal Electronic energy + Delta-G solvation = -26910.082930 eV Core-core repulsion = 23055.095013 eV Total energy + Delta-G solvation = -3854.987917 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.55150 -39.97366 -38.55040 -35.56258 -34.63606 -34.55793 -32.51774 -30.53960 -29.79852 -28.48615 -27.42267 -26.09539 -24.78963 -23.63540 -23.48400 -22.06249 -20.44574 -19.70341 -19.20649 -18.52316 -17.49513 -17.14526 -16.45454 -16.20979 -15.85893 -15.63484 -15.17799 -14.81712 -14.76181 -14.45227 -14.36244 -14.02601 -13.98494 -13.36225 -13.16498 -13.03979 -12.88059 -12.67325 -12.46632 -12.14981 -12.08840 -11.95101 -11.36084 -11.28700 -11.15142 -10.86762 -10.74337 -10.56837 -10.30195 -10.11028 -10.04952 -9.86693 -9.85659 -9.67264 -9.62787 -9.33465 -8.90648 -8.54538 -6.93885 -5.74200 -3.02930 0.27780 0.93982 1.34287 2.40735 2.43435 2.74356 3.44350 3.50129 3.52266 3.91784 3.93516 4.12613 4.51357 4.56899 4.57550 4.70659 4.71349 4.83412 4.86377 5.00132 5.04746 5.12294 5.16329 5.30244 5.41984 5.54424 5.58735 5.62148 5.64259 5.68006 5.76448 5.78567 5.96527 5.97144 6.18173 6.31864 6.44921 6.64054 6.81228 7.14383 7.19686 7.27959 7.44456 7.71964 7.96159 8.44005 9.55980 10.13384 10.49940 11.48296 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023165 B = 0.002035 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.441330 B =13757.324236 C =13969.846918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.185 3.815 3 H 0.059 0.941 4 N -0.719 5.719 5 C -0.238 4.238 6 H 0.071 0.929 7 C -0.014 4.014 8 N -0.931 5.931 9 Si 0.906 3.094 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.292 1.292 13 C 0.076 3.924 14 H 0.063 0.937 15 C 0.082 3.918 16 N -0.613 5.613 17 C 0.515 3.485 18 O -0.540 6.540 19 C -0.135 4.135 20 C -0.028 4.028 21 C -0.212 4.212 22 C 0.031 3.969 23 N -0.471 5.471 24 C 0.013 3.987 25 S 0.125 5.875 26 C 0.071 3.929 27 C 0.045 3.955 28 O -0.357 6.357 29 H 0.052 0.948 30 H 0.034 0.966 31 H 0.056 0.944 32 H 0.389 0.611 33 H 0.254 0.746 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.176 0.824 41 H 0.198 0.802 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.104 0.896 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.243 -2.937 -26.813 27.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.074 3.926 3 H 0.077 0.923 4 N -0.361 5.361 5 C -0.369 4.369 6 H 0.089 0.911 7 C -0.210 4.210 8 N -0.579 5.579 9 Si 0.737 3.263 10 H -0.205 1.205 11 H -0.219 1.219 12 H -0.219 1.219 13 C 0.017 3.983 14 H 0.081 0.919 15 C -0.041 4.041 16 N -0.347 5.347 17 C 0.304 3.696 18 O -0.417 6.417 19 C -0.175 4.175 20 C -0.068 4.068 21 C -0.333 4.333 22 C -0.120 4.120 23 N -0.184 5.184 24 C -0.285 4.285 25 S 0.377 5.623 26 C -0.052 4.052 27 C -0.033 4.033 28 O -0.275 6.275 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.223 0.777 33 H 0.064 0.936 34 H 0.099 0.901 35 H 0.118 0.882 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.106 0.894 40 H 0.193 0.807 41 H 0.215 0.785 42 H 0.097 0.903 43 H 0.108 0.892 44 H 0.122 0.878 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.972 -2.622 -26.472 26.675 hybrid contribution -0.471 0.361 0.509 0.782 sum 1.502 -2.260 -25.963 26.104 Atomic orbital electron populations 1.22414 0.98649 1.01614 0.99549 1.20199 0.92832 0.94616 0.84962 0.92292 1.42360 1.77849 1.10956 1.04901 1.19298 1.36426 0.93886 0.87320 0.91097 1.24746 1.02243 0.95976 0.98039 1.69687 1.50882 1.08643 1.28692 0.86130 0.77261 0.78809 0.84079 1.20550 1.21923 1.21929 1.22978 0.97578 0.83029 0.94741 0.91878 1.22506 1.01995 0.95858 0.83724 1.48203 1.54503 1.12892 1.19074 1.20546 0.77469 0.87822 0.83793 1.90716 1.52986 1.17954 1.80040 1.21714 1.02352 0.99376 0.94094 1.19789 1.01609 0.95787 0.89604 1.26065 0.98519 1.06423 1.02317 1.21812 1.01990 0.99284 0.88934 1.66329 1.10564 1.09461 1.32030 1.28396 0.96328 1.04467 0.99280 1.84234 1.21819 1.40015 1.16218 1.22531 1.00892 0.81734 1.00046 1.22902 0.99545 0.95237 0.85604 1.88113 1.67479 1.25893 1.46049 0.92880 0.94686 0.92443 0.77696 0.93625 0.90100 0.88180 0.88637 0.88429 0.88622 0.89438 0.80700 0.78495 0.90272 0.89198 0.87823 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 9.06 37.16 0.34 -2.61 16 2 C 0.18 3.66 2.77 -67.93 -0.19 3.47 16 3 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 4 N -0.72 -18.12 5.10 -53.42 -0.27 -18.40 16 5 C -0.24 -6.61 9.93 -15.06 -0.15 -6.76 16 6 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 7 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 8 N -0.93 -28.26 13.06 55.49 0.72 -27.53 16 9 Si 0.91 22.48 29.55 -169.99 -5.02 17.45 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 12 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 13 C 0.08 1.27 2.61 -26.58 -0.07 1.20 16 14 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 15 C 0.08 1.15 5.82 -3.53 -0.02 1.13 16 16 N -0.61 -7.24 3.02 -172.27 -0.52 -7.76 16 17 C 0.52 6.06 7.71 -10.99 -0.08 5.98 16 18 O -0.54 -8.28 15.45 5.55 0.09 -8.20 16 19 C -0.13 -1.03 4.05 -27.89 -0.11 -1.15 16 20 C -0.03 -0.22 5.04 -27.89 -0.14 -0.36 16 21 C -0.21 -1.59 5.85 -35.92 -0.21 -1.80 16 22 C 0.03 0.25 11.25 -19.19 -0.22 0.03 16 23 N -0.47 -4.25 10.54 -15.75 -0.17 -4.42 16 24 C 0.01 0.09 12.23 51.58 0.63 0.72 16 25 S 0.12 0.82 23.22 -107.50 -2.50 -1.68 16 26 C 0.07 0.65 6.54 -3.53 -0.02 0.63 16 27 C 0.05 0.52 6.98 37.31 0.26 0.78 16 28 O -0.36 -5.84 9.24 -35.23 -0.33 -6.17 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.03 0.53 6.42 -51.93 -0.33 0.19 16 31 H 0.06 1.10 7.55 -51.93 -0.39 0.71 16 32 H 0.39 10.58 7.59 -40.82 -0.31 10.27 16 33 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.08 1.09 6.27 -51.92 -0.33 0.76 16 35 H 0.10 1.50 7.08 -51.93 -0.37 1.13 16 36 H 0.10 0.63 7.66 -51.93 -0.40 0.23 16 37 H 0.10 0.58 8.01 -51.93 -0.42 0.17 16 38 H 0.10 0.77 8.10 -51.93 -0.42 0.35 16 39 H 0.09 0.77 8.10 -51.93 -0.42 0.35 16 40 H 0.18 1.10 8.06 -52.48 -0.42 0.68 16 41 H 0.20 0.71 8.06 -52.49 -0.42 0.29 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.09 0.55 6.05 -51.93 -0.31 0.24 16 44 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 379.75 15.07 5.72 5.72 Total: -1.00 -34.31 379.75 -8.98 -43.28 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -6.62 Total: 6.96 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -0.08 Total: 0.74 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: -0.23 Total: -58.11 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.24 Total: -14.36 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.50 Total: -1.68 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.31 -8.98 -43.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485641947.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.119 kcal (2) G-P(sol) polarization free energy of solvation -34.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds