Wall clock time and date at job start Sat Apr 11 2020 05:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 5 5 C 1.36939 * 119.99555 * 274.99680 * 4 2 1 6 6 H 1.07999 * 120.00498 * 0.02562 * 5 4 2 7 7 C 1.38813 * 119.99885 * 179.97438 * 5 4 2 8 8 N 1.31623 * 120.00026 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00060 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46953 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46786 * 120.00380 * 9 7 5 12 12 H 1.48498 * 109.47226 * 239.99908 * 9 7 5 13 13 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 14 14 H 1.09003 * 109.50747 * 185.10071 * 13 2 1 15 15 C 1.53299 * 109.51355 * 65.00544 * 13 2 1 16 16 N 1.47154 * 108.38601 * 187.77387 * 15 13 2 17 17 C 1.34772 * 120.97964 * 230.55832 * 16 15 13 18 18 O 1.21283 * 120.00254 * 359.97438 * 17 16 15 19 19 C 1.50700 * 120.00155 * 179.97438 * 17 16 15 20 20 C 1.52994 * 109.47322 * 179.97438 * 19 17 16 21 21 C 1.50701 * 109.46988 * 179.97438 * 20 19 17 22 22 C 1.33638 * 126.04170 * 90.00299 * 21 20 19 23 23 N 1.31776 * 114.50248 * 179.97438 * 22 21 20 24 24 C 1.29021 * 117.12895 * 359.97438 * 23 22 21 25 25 S 1.70982 * 110.16568 * 359.72818 * 24 23 22 26 26 C 1.47153 * 118.03767 * 50.52811 * 16 15 13 27 27 C 1.53299 * 108.38347 * 309.46531 * 26 16 15 28 28 O 1.42963 * 109.22127 * 52.30803 * 27 26 16 29 29 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 30 30 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 0.96998 * 120.00364 * 94.99433 * 4 2 1 33 33 H 0.96993 * 120.00204 * 179.97438 * 8 7 5 34 34 H 1.09008 * 109.67291 * 307.48932 * 15 13 2 35 35 H 1.08992 * 109.68290 * 68.00783 * 15 13 2 36 36 H 1.09006 * 109.46767 * 299.99483 * 19 17 16 37 37 H 1.09000 * 109.47429 * 59.98684 * 19 17 16 38 38 H 1.09006 * 109.47140 * 299.99699 * 20 19 17 39 39 H 1.08999 * 109.47147 * 59.99534 * 20 19 17 40 40 H 1.08003 * 122.74801 * 359.97438 * 22 21 20 41 41 H 1.08002 * 124.92248 * 180.02562 * 24 23 22 42 42 H 1.08996 * 109.68428 * 69.18980 * 26 16 15 43 43 H 1.08995 * 109.68154 * 189.74886 * 26 16 15 44 44 H 1.08998 * 109.50970 * 172.22605 * 27 26 16 45 45 H 1.09001 * 109.51741 * 292.32937 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1493 -0.0075 2.3757 6 1 1.8920 1.0403 2.4244 7 6 2.6115 -0.6620 3.5092 8 7 2.9245 -1.9391 3.4501 9 14 2.7906 0.2701 5.1181 10 1 2.3767 1.6824 4.9207 11 1 1.9295 -0.3578 6.1523 12 1 4.2075 0.2261 5.5605 13 6 2.0399 -0.7213 -1.2493 14 1 3.1261 -0.8015 -1.2054 15 6 1.6349 0.0697 -2.4984 16 7 1.9696 -0.7334 -3.6851 17 6 2.6771 -0.2051 -4.7034 18 8 3.0474 0.9485 -4.6502 19 6 3.0080 -1.0479 -5.9080 20 6 3.8109 -0.2143 -6.9087 21 6 4.1423 -1.0573 -8.1131 22 6 3.3969 -1.1813 -9.2153 23 7 3.9051 -1.9802 -10.1317 24 6 5.0381 -2.5367 -9.8643 25 16 5.5858 -2.0463 -8.3206 26 6 1.5097 -2.1306 -3.7270 27 6 1.9209 -2.8144 -2.4180 28 8 1.4658 -2.0290 -1.3135 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 2.2491 -1.6318 1.1526 33 1 3.2478 -2.3964 4.2420 34 1 0.5627 0.2647 -2.4776 35 1 2.1793 1.0135 -2.5277 36 1 3.5979 -1.9103 -5.5972 37 1 2.0853 -1.3891 -6.3774 38 1 3.2207 0.6479 -7.2195 39 1 4.7336 0.1271 -6.4395 40 1 2.4550 -0.6688 -9.3443 41 1 5.5665 -3.2106 -10.5224 42 1 0.4249 -2.1571 -3.8299 43 1 1.9716 -2.6441 -4.5701 44 1 1.4720 -3.8064 -2.3688 45 1 3.0066 -2.9038 -2.3793 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485641947.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:35 Heat of formation + Delta-G solvation = -42.978831 kcal Electronic energy + Delta-G solvation = -26911.115630 eV Core-core repulsion = 23055.095013 eV Total energy + Delta-G solvation = -3856.020617 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.52471 -40.56577 -39.67382 -37.12184 -35.73911 -35.27699 -34.30535 -31.97890 -30.53814 -29.95799 -28.51768 -26.92409 -26.24090 -24.97195 -24.34156 -23.22756 -21.19517 -20.96359 -20.11064 -19.30294 -19.08902 -18.20946 -17.64627 -17.06010 -16.92259 -16.61868 -16.29703 -16.04554 -15.94924 -15.48393 -15.16769 -15.06516 -14.99572 -14.73115 -14.44467 -14.02795 -13.96350 -13.75242 -13.48856 -13.41995 -13.06043 -12.87925 -12.82429 -12.65233 -12.44534 -12.36063 -12.13542 -11.86694 -11.83257 -11.64413 -11.55808 -11.17566 -10.94097 -10.86719 -10.58789 -10.20339 -9.86888 -9.58961 -9.00576 -7.92539 -5.21043 -0.24160 0.43609 0.82888 1.47366 1.47993 1.52921 1.58115 1.78150 1.92680 2.56525 2.80303 3.31206 3.41387 3.54137 3.60415 3.88260 3.93390 3.95802 3.99399 4.02095 4.13950 4.20260 4.33664 4.37098 4.40361 4.46517 4.51623 4.59487 4.61990 4.65342 4.82233 4.86478 4.95915 4.98167 5.03181 5.09912 5.22764 5.24597 5.31028 5.52056 5.62351 6.26418 6.28646 6.31730 6.75857 7.05298 7.35541 8.11218 8.35917 9.31140 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023165 B = 0.002035 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.441330 B =13757.324236 C =13969.846918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.175 3.825 3 H 0.057 0.943 4 N -0.732 5.732 5 C -0.237 4.237 6 H 0.077 0.923 7 C -0.078 4.078 8 N -0.969 5.969 9 Si 0.972 3.028 10 H -0.266 1.266 11 H -0.294 1.294 12 H -0.294 1.294 13 C 0.091 3.909 14 H 0.039 0.961 15 C 0.092 3.908 16 N -0.615 5.615 17 C 0.512 3.488 18 O -0.582 6.582 19 C -0.125 4.125 20 C -0.022 4.022 21 C -0.220 4.220 22 C 0.024 3.976 23 N -0.503 5.503 24 C 0.016 3.984 25 S 0.139 5.861 26 C 0.076 3.924 27 C 0.035 3.965 28 O -0.383 6.383 29 H 0.036 0.964 30 H 0.070 0.930 31 H 0.046 0.954 32 H 0.375 0.625 33 H 0.250 0.750 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.113 0.887 37 H 0.124 0.876 38 H 0.091 0.909 39 H 0.073 0.927 40 H 0.186 0.814 41 H 0.225 0.775 42 H 0.094 0.906 43 H 0.128 0.872 44 H 0.128 0.872 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.667 -3.368 -28.762 28.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.066 3.934 3 H 0.075 0.925 4 N -0.373 5.373 5 C -0.369 4.369 6 H 0.095 0.905 7 C -0.270 4.270 8 N -0.620 5.620 9 Si 0.801 3.199 10 H -0.190 1.190 11 H -0.222 1.222 12 H -0.222 1.222 13 C 0.032 3.968 14 H 0.057 0.943 15 C -0.032 4.032 16 N -0.348 5.348 17 C 0.303 3.697 18 O -0.462 6.462 19 C -0.165 4.165 20 C -0.062 4.062 21 C -0.341 4.341 22 C -0.126 4.126 23 N -0.217 5.217 24 C -0.280 4.280 25 S 0.392 5.608 26 C -0.046 4.046 27 C -0.042 4.042 28 O -0.302 6.302 29 H 0.055 0.945 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.207 0.793 33 H 0.058 0.942 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.131 0.869 37 H 0.142 0.858 38 H 0.109 0.891 39 H 0.092 0.908 40 H 0.203 0.797 41 H 0.241 0.759 42 H 0.112 0.888 43 H 0.146 0.854 44 H 0.145 0.855 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.373 -3.039 -28.466 28.661 hybrid contribution -0.264 0.462 1.004 1.136 sum 1.109 -2.577 -27.462 27.605 Atomic orbital electron populations 1.22207 0.96888 1.01176 1.00462 1.20440 0.93906 0.94477 0.84584 0.92511 1.42533 1.78277 1.10458 1.05987 1.19686 1.34723 0.94200 0.88308 0.90538 1.25558 1.03122 0.96922 1.01436 1.69843 1.52695 1.10214 1.29245 0.85088 0.76717 0.78212 0.79854 1.19002 1.22165 1.22172 1.22536 0.95861 0.83909 0.94497 0.94344 1.22195 1.02202 0.95109 0.83657 1.48306 1.54490 1.13833 1.18219 1.21273 0.76317 0.87664 0.84494 1.90701 1.54474 1.20055 1.80954 1.21732 1.03783 0.98845 0.92094 1.19660 1.00952 0.95841 0.89754 1.25974 0.99115 1.06915 1.02107 1.22026 1.02532 0.99200 0.88856 1.66379 1.11764 1.10654 1.32866 1.28903 0.95689 1.03863 0.99583 1.84209 1.21169 1.39435 1.16026 1.22703 1.02097 0.80000 0.99807 1.23231 0.99542 0.95942 0.85473 1.88059 1.67726 1.25800 1.48615 0.94513 0.91128 0.93472 0.79285 0.94150 0.89075 0.89538 0.86890 0.85754 0.89107 0.90833 0.79690 0.75873 0.88792 0.85395 0.85457 0.93432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.28 9.06 71.98 0.65 -4.63 16 2 C 0.17 6.99 2.77 44.99 0.12 7.11 16 3 H 0.06 2.28 8.08 -2.39 -0.02 2.26 16 4 N -0.73 -37.78 5.10 -322.93 -1.65 -39.43 16 5 C -0.24 -13.36 9.93 84.03 0.83 -12.52 16 6 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 7 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 8 N -0.97 -60.27 13.06 21.65 0.28 -59.99 16 9 Si 0.97 46.82 29.55 68.60 2.03 48.85 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 11 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 12 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 13 C 0.09 3.07 2.61 30.69 0.08 3.15 16 14 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 15 C 0.09 2.50 5.82 86.35 0.50 3.00 16 16 N -0.62 -13.35 3.02 -817.35 -2.47 -15.82 16 17 C 0.51 11.21 7.71 87.66 0.68 11.88 16 18 O -0.58 -17.68 15.45 -3.04 -0.05 -17.72 16 19 C -0.12 -1.56 4.05 29.85 0.12 -1.44 16 20 C -0.02 -0.31 5.04 29.85 0.15 -0.16 16 21 C -0.22 -2.90 5.85 24.64 0.14 -2.76 16 22 C 0.02 0.35 11.25 83.66 0.94 1.29 16 23 N -0.50 -8.17 10.54 -203.75 -2.15 -10.32 16 24 C 0.02 0.19 12.23 130.66 1.60 1.78 16 25 S 0.14 1.55 23.22 -56.49 -1.31 0.24 16 26 C 0.08 1.13 6.54 86.35 0.56 1.69 16 27 C 0.04 0.74 6.98 72.08 0.50 1.25 16 28 O -0.38 -12.32 9.24 -148.98 -1.38 -13.70 16 29 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.07 2.00 6.42 -2.39 -0.02 1.98 16 31 H 0.05 1.77 7.55 -2.39 -0.02 1.76 16 32 H 0.38 21.11 7.59 -92.71 -0.70 20.41 16 33 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 34 H 0.09 2.28 6.27 -2.38 -0.01 2.26 16 35 H 0.09 2.60 7.08 -2.39 -0.02 2.58 16 36 H 0.11 1.08 7.66 -2.38 -0.02 1.06 16 37 H 0.12 0.96 8.01 -2.39 -0.02 0.94 16 38 H 0.09 1.38 8.10 -2.38 -0.02 1.36 16 39 H 0.07 1.25 8.10 -2.39 -0.02 1.23 16 40 H 0.19 2.02 8.06 -2.91 -0.02 2.00 16 41 H 0.22 1.01 8.06 -2.91 -0.02 0.99 16 42 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.13 0.96 6.05 -2.39 -0.01 0.94 16 44 H 0.13 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -76.32 379.75 0.97 -75.35 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: 0.30 Total: 27.00 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: 7.36 Total: 5.55 kcal Atomic # 7 Polarization: -119.57 SS G_CDS: -5.98 Total: -125.56 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -1.42 Total: -31.42 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -1.31 Total: 0.24 kcal Total: -76.32 0.97 -75.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485641947.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.370 kcal (2) G-P(sol) polarization free energy of solvation -76.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds